NO07G02260.1, NO07G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02260.1
Unique NameNO07G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr7:673052..674865 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:673052..674865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02260.1 vs.
Match: EWM27197.1 (SNARE-complex protein Syntaxin-18 like protein [Nannochloropsis gaditana])

HSP 1 Score: 234.6 bits (597), Expect = 5.000e-58
Identity = 139/241 (57.68%), Postives = 171/241 (70.95%), Query Frame = 0 
Query:    1 MDVTSTWRRAVSAAK-RTPATAPPFLSSSSSSSMHAAASFSVSACPPR------GFITDPFTQQAREVLESIRAKEEMLIRSRGHYVDPYRYVPSRASVMTEQERDQVDQVMASFIIKCGSQIEIIRCALAEASSPEAGGGNAATVGGDGSRLAHYGGVVSYLAERLQDLGHTLQSLQSQRRKLKAIVPFSGGFGGSSSSRTTPCARRRMHMTPPHSPSASGSGNLSRQRKAQPVLTQSKL 235
            MDVT  W  AV++A+  T A +P F SS+   S  A A+ S S  P +      G ITDPFTQQAREVL+SIR KEE+L ++RG YVDPYRYVPSRA+ MT+ ERDQ+DQVMASFIIKCGSQIEI+RCALAEASS EAGGGNA  VGG+GSRLAH+G VV+YLAERLQDLG+TLQ+LQ++RR L  +VP S G     + R  P +  R   TP  +  A   G  S + K +P++  +K+
Sbjct:    1 MDVTDAWLAAVASARWTTKAASPGFPSSTCVKSRTAFATASTSTFPNKSADATHGIITDPFTQQAREVLDSIRTKEEILKKNRGRYVDPYRYVPSRAANMTDLERDQIDQVMASFIIKCGSQIEILRCALAEASSLEAGGGNADLVGGEGSRLAHHGKVVAYLAERLQDLGNTLQNLQARRRHLNGLVPSSSGADAGQACR--PGSTTRTLTTPSWNSFAKAGG--SHKAKGRPIMAPNKV 237
The following BLAST results are available for this feature:
BLAST of NO07G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27197.15.000e-5857.68SNARE-complex protein Syntaxin-18 like protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02260NO07G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02260.1NO07G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02260.1.cds1NO07G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02260.1.cds2NO07G02260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02260.1.cds3NO07G02260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02260.1.cds4NO07G02260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02260.1.cds5NO07G02260.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02260.1.cds6NO07G02260.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02260.1 ID=NO07G02260.1|Name=NO07G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
ATGGACGTGACGAGTACATGGCGCAGAGCTGTGTCGGCAGCCAAGCGAAC
TCCTGCGACGGCGCCGCCTTTTTTGTCCTCGTCTTCCTCGTCCTCAATGC
ATGCTGCCGCCTCCTTCTCTGTGTCGGCTTGCCCACCACGAGGCTTCATT
ACCGACCCCTTCACGCAGCAGGCACGGGAAGTGTTGGAAAGCATTCGTGC
CAAAGAGGAAATGTTGATTCGGAGCCGAGGTCACTACGTGGACCCCTACC
GTTATGTGCCCTCAAGGGCCTCAGTCATGACGGAGCAAGAGCGGGATCAG
GTGGACCAGGTCATGGCTTCCTTCATCATCAAGTGCGGCTCTCAAATCGA
GATCATTCGCTGTGCACTTGCAGAGGCAAGCTCCCCAGAAGCGGGGGGCG
GCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACGGA
GGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACGCT
GCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTTTA
GTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAAGA
AGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGTGG
CAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAAGC
TGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAGAA
GAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACGCA
GGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGTCC
GAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCTTC
ACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAGGC
GGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCTTT
CGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCGTC
TTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG
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protein sequence of NO07G02260.1

>NO07G02260.1-protein ID=NO07G02260.1-protein|Name=NO07G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MDVTSTWRRAVSAAKRTPATAPPFLSSSSSSSMHAAASFSVSACPPRGFI
TDPFTQQAREVLESIRAKEEMLIRSRGHYVDPYRYVPSRASVMTEQERDQ
VDQVMASFIIKCGSQIEIIRCALAEASSPEAGGGNAATVGGDGSRLAHYG
GVVSYLAERLQDLGHTLQSLQSQRRKLKAIVPFSGGFGGSSSSRTTPCAR
RRMHMTPPHSPSASGSGNLSRQRKAQPVLTQSKLEVEEDEAFTRRVAARE
EGRNRQEQQQRQVLLTQENRVLTVRLNNELEDVRMMEGKMLELSQLLGLF
TGKLLEQQDQVEEIHEAARGAHNNVGQANHELLSTLDRNSKASQTMLTFV
FVLCIALLILDQAIP*
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mRNA from alignment at chr7:673052..674865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02260.1 ID=NO07G02260.1|Name=NO07G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at chr7:673052..674865+ (Nannochloropsis oceanica)
ATGGACGTGACGAGTACATGGCGCAGAGCTGTGTCGGCAGCCAAGCGAAC
TCCTGCGACGGCGCCGCCTTTTTTGTCCTCGTCTTCCTCGTCCTCAATGC
ATGCTGCCGCCTCCTTCTCTGTGTCGGCTTGCCCACCACGAGGCTTCATT
ACCGACCCCTTCACGCAGCAGGCACGGGAAGTGTTGGAAAGCATTCGTGC
CAAAGAGGAAATGTTGATTCGGAGCCGAGGTCACTACGTGGACCCCTACC
GTTATGTGCCCTCAAGGGCCTCAGTCATGACGGAGCAAGAGCGGGATCAG
GTGGACCAGGTCATGGCTTCCTTCATCATCAAGTGCGGCTCTCAAATCGA
GATCATTCGCTGTGCACTTGCAGGTGAGGGTGGAATTGAGAGAGGTTGTA
GAAAAACGTACGTATCATTTTATCAAATTCAAATTATATCATACCACCCA
GAGGCAAGCTCCCCAGAAGCGGGGGGCGGCAACGCGGCCACGGTTGGCGG
CGATGGTTCCCGGTTGGCACATTACGGAGGGGTTGTATCTTATCTTGCCG
AGGTACGTGGATGATATGATTGCATGAGCAGGCTATAGAATGGCATGAAA
TTCTTCTAGTTTCCGTTCAATCACTCTGCTTCCTTTCCACAACCCACCCA
CAGCGACTACAAGACCTGGGGCACACGCTGCAAAGTCTGCAATCCCAACG
CCGCAAGCTGAAAGCTATCGTGCCGTTTAGTGGTGGTTTTGGGGGCTCTT
CCTCGTCAAGAACCACACCTTGTGCAAGAAGAAGGTGAGTGGTGGGTTGA
CTGTAAGACAGGCTCATTTGACTCTTTTTTTTTCTTCCTTTTTGAACTCG
TGACCCATACACGCACAGAATGCACATGACGCCACCCCACAGTCCCTCTG
CCAGCGGCAGTGGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTG
ACACAAAGCAAGGTTCGTCGTTCCTGAAGTATGACTGTCATTTATGGATA
AATGTGATAAGTTCATTCATTCGCGACCGACATCTAAATCATTCCTCATC
AGCAGCTCCATGCGGTGATTATGACCCTTTCGACAGGATGATACTTGACT
GATTGTATTGAAGCTACCACTTACCTGCCCTCCTCCTCTCCCTCCACCCA
ACAGCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCAC
GAGAAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTC
ACGCAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGA
CGTCCGGTGCGTGTAGAAAAGAGTGGCATATGCTGGTTAGGAAATCATAG
GTTTATGTATGGGTGCATCCCGATTATCATAAGACAAACGTACACTCCTC
ACATTCAGCTTTCTGACTCCGAGGCAAAAGCCTTCTGGCGTATTCACAAA
GATTGATCGATTGATTGTTTTAATGATTGATTCTTTTTTTCATCGATATT
TGACCTTTACAAAATGCCGATTTTAACCTCCCACCTACATGATCATGTTT
ATTCTTCCCGCACACAGAATGATGGAAGGCAAGATGCTGGAACTCTCGCA
GCTATTAGGCCTCTTCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCG
AGGAGATACATGAGGCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCA
AACCACGAGCTCCTTTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGAC
CATGCTCACATTCGTCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACC
AGGCCATTCCATAG
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Coding sequence (CDS) from alignment at chr7:673052..674865+

>NO07G02260.1 ID=NO07G02260.1|Name=NO07G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr7:673052..674865+ (Nannochloropsis oceanica)
ATGGACGTGACGAGTACATGGCGCAGAGCTGTGTCGGCAGCCAAGCGAAC
TCCTGCGACGGCGCCGCCTTTTTTGTCCTCGTCTTCCTCGTCCTCAATGC
ATGCTGCCGCCTCCTTCTCTGTGTCGGCTTGCCCACCACGAGGCTTCATT
ACCGACCCCTTCACGCAGCAGGCACGGGAAGTGTTGGAAAGCATTCGTGC
CAAAGAGGAAATGTTGATTCGGAGCCGAGGTCACTACGTGGACCCCTACC
GTTATGTGCCCTCAAGGGCCTCAGTCATGACGGAGCAAGAGCGGGATCAG
GTGGACCAGGTCATGGCTTCCTTCATCATCAAGTGCGGCTCTCAAATCGA
GATCATTCGCTGTGCACTTGCAGAGGCAAGCTCCCCAGAAGCGGGGGGCG
GCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACGGA
GGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACGCT
GCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTTTA
GTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAAGA
AGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGTGG
CAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAAGC
TGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAGAA
GAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACGCA
GGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGTCC
GAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCTTC
ACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAGGC
GGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCTTT
CGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCGTC
TTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG
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Synonyms
Publications