NO07G02240.1, NO07G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02240.1
Unique NameNO07G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1404
Alignment locationchr7:669338..670741 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:669338..670741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02240.1 vs.
Match: EWM27223.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 501.5 bits (1290), Expect = 2.800e-138
Identity = 266/449 (59.24%), Postives = 324/449 (72.16%), Query Frame = 0 
Query:   21 PEAEFDLEELAPTMRSVEILRGPASVPSLPTHYDRHQGAYLYRVGAGPSGSSGGGNCGSSLSH-LVVPTHPKTQQNYAAPTLRPASSISSSAATSMTEKVESLAAPKMPFEMALFPLERCHYYTNKSAEDLHTDIEAALQEKGVVFNFVPAKFKFACEYRTGVNMVRFVCRAYFVPEDGRTVVEFQRRAGCCIVCAKVVDAVRSTLLARECNAEAAPIAIRAFQPKPLYITACLLHEKSQAEAP---SRQLAQQCTLMDDLRRCMAEGKDAVLTDFAVVLVPLSQLAPQRLLGDPSNAELLAALGQHVNVPNARLSALVCLANLAAICFPVSVESIFSLPSLRRCASSDPDNDVTDDAAANEPGPSVGEVCAWFDGVLLTLVRTLDAESEEDGNPHFRREAARALLHLTKESFARTMAVRGALEKCAAAGPVGKDRLLDSYVQGALRHM 466
            PEAEFD+EEL P  RS+ +  GP  V +LP+HY+RHQGAYLYR G G  G+ G G+     +  L +P  P+ Q   A   L  +S + S+ A  M      L AP +PFE +LFPLERCHYYTNK   +L +DI+ AL+EK VVF FVP KFKF+CEYRTGVN VRFVCRAYFVPEDGRTVVEFQRR+GCCIVCAKVVDAVRSTLLARECN+EA PI+IR F+PKPL  +ACL+ E+ ++ A    +RQ AQQC LM DL+ C+A+G+D VLTDFA VL+PLSQLAP+ LLG PS+AELLAALG+H  + + RLSALVCLANLAA CFP S E + S+P LRR  S+D ++D  D     EP PS G+VCAWF+ VL T++  L ++     + H RREAARAL HL+KESFART A R  LE C  +G   +D +L  YV+GAL HM
Sbjct:   29 PEAEFDIEELGPATRSIGVSSGPTPVQTLPSHYNRHQGAYLYRDGVGTGGNDGDGDKHVECTPPLTIPFMPQKQHQRADYLL--SSKLRSNDAVDMIPA--KLVAPNLPFETSLFPLERCHYYTNKPTPELFSDIQVALKEKAVVFKFVPGKFKFSCEYRTGVNNVRFVCRAYFVPEDGRTVVEFQRRSGCCIVCAKVVDAVRSTLLARECNSEALPISIRPFKPKPLAASACLVQEEGESSAKVERARQEAQQCKLMRDLQDCLAQGRDDVLTDFAKVLIPLSQLAPEHLLGQPSHAELLAALGRH-EIQSTRLSALVCLANLAAACFPQSGEGLSSVPFLRRGVSTDTEDDNPDVETGEEPAPSAGDVCAWFEDVLETIINALQSKFGPRSDAHVRREAARALWHLSKESFARTAAARQVLESC-VSGDAEEDHVLQEYVRGALEHM 471
The following BLAST results are available for this feature:
BLAST of NO07G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27223.12.800e-13859.24Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02240NO07G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02240.1NO07G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02240.1.cds1NO07G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02240.1 ID=NO07G02240.1|Name=NO07G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ATGAGTGACCACACGCCGTGCACGCCGGGCCCTGAGAACGAGACGCAGCA
GCATGAGCACCCGGAAGCCGAATTTGACCTGGAGGAATTGGCCCCCACCA
TGCGCTCCGTAGAGATATTGCGCGGCCCCGCCTCGGTGCCCAGCCTGCCC
ACTCACTATGACCGTCATCAGGGTGCCTACTTGTATCGCGTAGGGGCGGG
ACCCAGCGGTAGCTCTGGTGGTGGTAATTGTGGGTCATCTTTGTCTCACT
TAGTCGTCCCCACGCACCCCAAGACGCAGCAAAATTATGCGGCCCCGACG
CTAAGGCCCGCGTCTTCAATATCATCGTCGGCGGCGACATCCATGACCGA
GAAAGTCGAGTCGTTGGCCGCACCTAAGATGCCATTTGAGATGGCGCTCT
TTCCCCTGGAGAGGTGCCACTACTACACCAACAAGTCGGCCGAAGATTTG
CACACCGACATTGAGGCAGCGCTTCAAGAGAAGGGCGTGGTTTTCAATTT
TGTGCCTGCAAAGTTCAAATTTGCCTGTGAGTATCGCACGGGCGTGAACA
TGGTGCGGTTTGTCTGTCGGGCATATTTTGTGCCCGAGGACGGTCGGACA
GTAGTGGAATTTCAACGCCGCGCGGGTTGCTGTATCGTCTGCGCGAAGGT
GGTGGACGCGGTGCGCTCGACGCTGCTGGCACGGGAATGCAACGCTGAGG
CAGCACCCATAGCCATTCGGGCCTTCCAGCCCAAGCCTTTGTATATAACT
GCATGCCTGCTCCACGAGAAAAGCCAGGCGGAGGCGCCGTCGCGTCAATT
AGCGCAGCAATGCACTTTGATGGACGATTTACGAAGGTGTATGGCGGAAG
GCAAGGACGCAGTCTTGACGGACTTTGCCGTGGTTCTAGTCCCACTTTCG
CAGCTCGCCCCGCAGCGATTACTGGGGGATCCAAGCAATGCTGAGCTTTT
GGCTGCACTAGGACAGCACGTGAATGTGCCAAACGCGCGCCTCAGCGCCT
TGGTCTGTTTGGCAAACTTGGCGGCGATCTGCTTCCCTGTAAGTGTGGAG
AGTATATTCAGCTTGCCATCCCTGCGAAGGTGCGCCAGCAGTGACCCGGA
TAACGACGTGACAGATGATGCGGCCGCGAACGAGCCCGGCCCAAGCGTGG
GCGAGGTATGTGCCTGGTTCGATGGCGTGCTCCTGACACTTGTGAGAACG
TTGGACGCAGAGTCAGAGGAGGATGGGAATCCGCATTTTCGCCGGGAGGC
GGCTCGCGCGCTTCTCCACTTAACGAAGGAGTCATTTGCGCGCACGATGG
CTGTGCGGGGGGCTTTGGAAAAGTGTGCTGCTGCTGGACCGGTGGGGAAG
GACCGCCTTTTGGATAGCTATGTCCAAGGAGCCCTGCGGCACATGGGGGC
GTGA
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protein sequence of NO07G02240.1

>NO07G02240.1-protein ID=NO07G02240.1-protein|Name=NO07G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MSDHTPCTPGPENETQQHEHPEAEFDLEELAPTMRSVEILRGPASVPSLP
THYDRHQGAYLYRVGAGPSGSSGGGNCGSSLSHLVVPTHPKTQQNYAAPT
LRPASSISSSAATSMTEKVESLAAPKMPFEMALFPLERCHYYTNKSAEDL
HTDIEAALQEKGVVFNFVPAKFKFACEYRTGVNMVRFVCRAYFVPEDGRT
VVEFQRRAGCCIVCAKVVDAVRSTLLARECNAEAAPIAIRAFQPKPLYIT
ACLLHEKSQAEAPSRQLAQQCTLMDDLRRCMAEGKDAVLTDFAVVLVPLS
QLAPQRLLGDPSNAELLAALGQHVNVPNARLSALVCLANLAAICFPVSVE
SIFSLPSLRRCASSDPDNDVTDDAAANEPGPSVGEVCAWFDGVLLTLVRT
LDAESEEDGNPHFRREAARALLHLTKESFARTMAVRGALEKCAAAGPVGK
DRLLDSYVQGALRHMGA*
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mRNA from alignment at chr7:669338..670741+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02240.1 ID=NO07G02240.1|Name=NO07G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr7:669338..670741+ (Nannochloropsis oceanica)
ATGAGTGACCACACGCCGTGCACGCCGGGCCCTGAGAACGAGACGCAGCA
GCATGAGCACCCGGAAGCCGAATTTGACCTGGAGGAATTGGCCCCCACCA
TGCGCTCCGTAGAGATATTGCGCGGCCCCGCCTCGGTGCCCAGCCTGCCC
ACTCACTATGACCGTCATCAGGGTGCCTACTTGTATCGCGTAGGGGCGGG
ACCCAGCGGTAGCTCTGGTGGTGGTAATTGTGGGTCATCTTTGTCTCACT
TAGTCGTCCCCACGCACCCCAAGACGCAGCAAAATTATGCGGCCCCGACG
CTAAGGCCCGCGTCTTCAATATCATCGTCGGCGGCGACATCCATGACCGA
GAAAGTCGAGTCGTTGGCCGCACCTAAGATGCCATTTGAGATGGCGCTCT
TTCCCCTGGAGAGGTGCCACTACTACACCAACAAGTCGGCCGAAGATTTG
CACACCGACATTGAGGCAGCGCTTCAAGAGAAGGGCGTGGTTTTCAATTT
TGTGCCTGCAAAGTTCAAATTTGCCTGTGAGTATCGCACGGGCGTGAACA
TGGTGCGGTTTGTCTGTCGGGCATATTTTGTGCCCGAGGACGGTCGGACA
GTAGTGGAATTTCAACGCCGCGCGGGTTGCTGTATCGTCTGCGCGAAGGT
GGTGGACGCGGTGCGCTCGACGCTGCTGGCACGGGAATGCAACGCTGAGG
CAGCACCCATAGCCATTCGGGCCTTCCAGCCCAAGCCTTTGTATATAACT
GCATGCCTGCTCCACGAGAAAAGCCAGGCGGAGGCGCCGTCGCGTCAATT
AGCGCAGCAATGCACTTTGATGGACGATTTACGAAGGTGTATGGCGGAAG
GCAAGGACGCAGTCTTGACGGACTTTGCCGTGGTTCTAGTCCCACTTTCG
CAGCTCGCCCCGCAGCGATTACTGGGGGATCCAAGCAATGCTGAGCTTTT
GGCTGCACTAGGACAGCACGTGAATGTGCCAAACGCGCGCCTCAGCGCCT
TGGTCTGTTTGGCAAACTTGGCGGCGATCTGCTTCCCTGTAAGTGTGGAG
AGTATATTCAGCTTGCCATCCCTGCGAAGGTGCGCCAGCAGTGACCCGGA
TAACGACGTGACAGATGATGCGGCCGCGAACGAGCCCGGCCCAAGCGTGG
GCGAGGTATGTGCCTGGTTCGATGGCGTGCTCCTGACACTTGTGAGAACG
TTGGACGCAGAGTCAGAGGAGGATGGGAATCCGCATTTTCGCCGGGAGGC
GGCTCGCGCGCTTCTCCACTTAACGAAGGAGTCATTTGCGCGCACGATGG
CTGTGCGGGGGGCTTTGGAAAAGTGTGCTGCTGCTGGACCGGTGGGGAAG
GACCGCCTTTTGGATAGCTATGTCCAAGGAGCCCTGCGGCACATGGGGGC
GTGA
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Coding sequence (CDS) from alignment at chr7:669338..670741+

>NO07G02240.1 ID=NO07G02240.1|Name=NO07G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr7:669338..670741+ (Nannochloropsis oceanica)
ATGAGTGACCACACGCCGTGCACGCCGGGCCCTGAGAACGAGACGCAGCA
GCATGAGCACCCGGAAGCCGAATTTGACCTGGAGGAATTGGCCCCCACCA
TGCGCTCCGTAGAGATATTGCGCGGCCCCGCCTCGGTGCCCAGCCTGCCC
ACTCACTATGACCGTCATCAGGGTGCCTACTTGTATCGCGTAGGGGCGGG
ACCCAGCGGTAGCTCTGGTGGTGGTAATTGTGGGTCATCTTTGTCTCACT
TAGTCGTCCCCACGCACCCCAAGACGCAGCAAAATTATGCGGCCCCGACG
CTAAGGCCCGCGTCTTCAATATCATCGTCGGCGGCGACATCCATGACCGA
GAAAGTCGAGTCGTTGGCCGCACCTAAGATGCCATTTGAGATGGCGCTCT
TTCCCCTGGAGAGGTGCCACTACTACACCAACAAGTCGGCCGAAGATTTG
CACACCGACATTGAGGCAGCGCTTCAAGAGAAGGGCGTGGTTTTCAATTT
TGTGCCTGCAAAGTTCAAATTTGCCTGTGAGTATCGCACGGGCGTGAACA
TGGTGCGGTTTGTCTGTCGGGCATATTTTGTGCCCGAGGACGGTCGGACA
GTAGTGGAATTTCAACGCCGCGCGGGTTGCTGTATCGTCTGCGCGAAGGT
GGTGGACGCGGTGCGCTCGACGCTGCTGGCACGGGAATGCAACGCTGAGG
CAGCACCCATAGCCATTCGGGCCTTCCAGCCCAAGCCTTTGTATATAACT
GCATGCCTGCTCCACGAGAAAAGCCAGGCGGAGGCGCCGTCGCGTCAATT
AGCGCAGCAATGCACTTTGATGGACGATTTACGAAGGTGTATGGCGGAAG
GCAAGGACGCAGTCTTGACGGACTTTGCCGTGGTTCTAGTCCCACTTTCG
CAGCTCGCCCCGCAGCGATTACTGGGGGATCCAAGCAATGCTGAGCTTTT
GGCTGCACTAGGACAGCACGTGAATGTGCCAAACGCGCGCCTCAGCGCCT
TGGTCTGTTTGGCAAACTTGGCGGCGATCTGCTTCCCTGTAAGTGTGGAG
AGTATATTCAGCTTGCCATCCCTGCGAAGGTGCGCCAGCAGTGACCCGGA
TAACGACGTGACAGATGATGCGGCCGCGAACGAGCCCGGCCCAAGCGTGG
GCGAGGTATGTGCCTGGTTCGATGGCGTGCTCCTGACACTTGTGAGAACG
TTGGACGCAGAGTCAGAGGAGGATGGGAATCCGCATTTTCGCCGGGAGGC
GGCTCGCGCGCTTCTCCACTTAACGAAGGAGTCATTTGCGCGCACGATGG
CTGTGCGGGGGGCTTTGGAAAAGTGTGCTGCTGCTGGACCGGTGGGGAAG
GACCGCCTTTTGGATAGCTATGTCCAAGGAGCCCTGCGGCACATGGGGGC
GTGA
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Synonyms
Publications