NO07G02050.1, NO07G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02050.1
Unique NameNO07G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr7:600642..601766 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:600642..601766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G02050.1 vs.
Match: EWM27225.1 (hypothetical protein Naga_100010g100 [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 8.600e-82
Identity = 182/365 (49.86%), Postives = 232/365 (63.56%), Query Frame = 0
Query:    8 LLRLRYIASTNTQANAICEELALALRLSTSQASSSNASPHSCLQLGNALLEFTPLPLWMTLARHSTMLKRPQVARLCGIDVFTNSAI------MTPAPLSSSYHDARAWLLEDRPIVTPTVRTVPSTSSVSLASTMSPQVREIVLGAGANLAELASIITDEVGAHPCPGLPHVYALHDGMKGNSAGNKAPLNANSIIDAPGFLKQAQSPQQQHSSLSLQRNSIALRLLHSPMSALVLQVESGGLAAAKEDLWHRGVKFEEIGGTGAAEGQILLSSPHLHGLDVRICDGEAALSPFFNEGDEVLCEHVLEELNPAISKSLAAVGEGWKQASSPAAAYRQMGTGMGDCWSEFRSQLKRPGGFFMSSS 367
            ++RL Y+ ++++ A AI   LA  L+L +S +S+S       L LGNA+LEF+ LP W+  AR S +LKRPQV+RL  I+VFT ++        T A  S  + +ARAWL EDRP++TPT +   S  S    +  +P VRE+VLGAG    E+  ++TDE+ A PCPG PH+Y LH       + +KAP                              + I +RLLHSPMSA+VLQV +GGL   KEDL  RGV FEEIG TGA EGQ+LLSS  L GLDVR+CD +A LSP+FNEGDEVL EHV+EELNP +S  LA+V E  +QA+SPA  YR+MG   GDCWSEFRSQ+KRPGGFF +SS
Sbjct:    9 IMRLHYVTASDSHARAIVSVLASVLQLPSSSSSAS-------LHLGNAVLEFSALPAWVNYARQSRVLKRPQVSRLRAIEVFTGTSCGEGSKGSTAAQSSFPHQNARAWLTEDRPLITPTFQK-SSFCSAPTNAVATPFVREVVLGAGLRWVEMTRLVTDELDAIPCPGFPHLYVLH----AELSDSKAP----------------------------PSSGIFVRLLHSPMSAVVLQVRAGGLNKLKEDLRRRGVTFEEIGSTGATEGQLLLSSHLLRGLDVRLCDADAVLSPYFNEGDEVLREHVIEELNPGLSLPLASV-EAGQQANSPAEEYRRMGARTGDCWSEFRSQIKRPGGFFTASS 332          
The following BLAST results are available for this feature:
BLAST of NO07G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27225.18.600e-8249.86hypothetical protein Naga_100010g100 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02050NO07G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02050.1NO07G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02050.1.cds1NO07G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02050.1 ID=NO07G02050.1|Name=NO07G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGACCACCACCACCACAGCACTTTTACGCCTCCGCTACATTGCTTCCAC
CAATACTCAAGCGAACGCAATTTGCGAAGAGCTTGCCTTGGCTCTCCGCC
TGTCTACATCTCAGGCCTCCTCCTCTAATGCATCGCCCCACTCTTGTCTG
CAATTGGGTAATGCATTGCTTGAATTTACGCCCTTGCCTCTTTGGATGAC
TTTGGCCAGACATTCAACCATGCTGAAGCGCCCACAAGTGGCGCGGCTGT
GTGGTATTGATGTTTTCACAAATTCCGCTATCATGACCCCTGCCCCCTTG
TCTTCTTCATACCACGACGCGCGGGCTTGGCTACTCGAGGACCGACCCAT
AGTCACCCCAACAGTGCGTACCGTTCCTTCGACCAGCAGCGTATCCTTGG
CTTCCACCATGAGTCCGCAAGTACGAGAAATCGTGCTAGGGGCGGGTGCG
AATTTGGCCGAGCTGGCCAGCATCATCACGGATGAAGTCGGTGCTCATCC
ATGCCCAGGCCTGCCACATGTCTATGCTTTACACGACGGAATGAAGGGCA
ATAGTGCAGGTAATAAAGCACCCTTAAATGCCAACAGCATCATTGACGCC
CCGGGCTTCCTCAAGCAGGCGCAATCACCGCAGCAGCAGCATTCCTCCCT
GTCACTCCAACGCAACAGCATCGCCTTACGCCTTCTACACTCGCCCATGT
CAGCATTGGTCCTTCAGGTAGAATCAGGTGGGCTGGCTGCAGCCAAGGAG
GATCTGTGGCATCGTGGAGTAAAGTTTGAGGAGATAGGAGGCACGGGTGC
GGCAGAGGGACAGATTTTGCTTTCCTCTCCGCATTTGCATGGCTTGGATG
TACGGATCTGTGATGGTGAGGCAGCTCTTTCTCCTTTTTTCAACGAGGGA
GATGAGGTCCTGTGCGAGCACGTACTTGAGGAGCTGAATCCTGCAATTTC
CAAATCGCTGGCCGCCGTGGGGGAAGGTTGGAAGCAAGCCTCATCACCCG
CCGCGGCGTACCGACAAATGGGAACGGGTATGGGGGACTGCTGGTCGGAG
TTCCGCTCTCAATTGAAGCGGCCTGGGGGGTTCTTCATGTCTTCCTCATC
ATCGTTTGGGTCCTCTTCAAAGTGA
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protein sequence of NO07G02050.1

>NO07G02050.1-protein ID=NO07G02050.1-protein|Name=NO07G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MTTTTTALLRLRYIASTNTQANAICEELALALRLSTSQASSSNASPHSCL
QLGNALLEFTPLPLWMTLARHSTMLKRPQVARLCGIDVFTNSAIMTPAPL
SSSYHDARAWLLEDRPIVTPTVRTVPSTSSVSLASTMSPQVREIVLGAGA
NLAELASIITDEVGAHPCPGLPHVYALHDGMKGNSAGNKAPLNANSIIDA
PGFLKQAQSPQQQHSSLSLQRNSIALRLLHSPMSALVLQVESGGLAAAKE
DLWHRGVKFEEIGGTGAAEGQILLSSPHLHGLDVRICDGEAALSPFFNEG
DEVLCEHVLEELNPAISKSLAAVGEGWKQASSPAAAYRQMGTGMGDCWSE
FRSQLKRPGGFFMSSSSSFGSSSK*
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mRNA from alignment at chr7:600642..601766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02050.1 ID=NO07G02050.1|Name=NO07G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp|location=Sequence derived from alignment at chr7:600642..601766- (Nannochloropsis oceanica)
ATGACCACCACCACCACAGCACTTTTACGCCTCCGCTACATTGCTTCCAC CAATACTCAAGCGAACGCAATTTGCGAAGAGCTTGCCTTGGCTCTCCGCC TGTCTACATCTCAGGCCTCCTCCTCTAATGCATCGCCCCACTCTTGTCTG CAATTGGGTAATGCATTGCTTGAATTTACGCCCTTGCCTCTTTGGATGAC TTTGGCCAGACATTCAACCATGCTGAAGCGCCCACAAGTGGCGCGGCTGT GTGGTATTGATGTTTTCACAAATTCCGCTATCATGACCCCTGCCCCCTTG TCTTCTTCATACCACGACGCGCGGGCTTGGCTACTCGAGGACCGACCCAT AGTCACCCCAACAGTGCGTACCGTTCCTTCGACCAGCAGCGTATCCTTGG CTTCCACCATGAGTCCGCAAGTACGAGAAATCGTGCTAGGGGCGGGTGCG AATTTGGCCGAGCTGGCCAGCATCATCACGGATGAAGTCGGTGCTCATCC ATGCCCAGGCCTGCCACATGTCTATGCTTTACACGACGGAATGAAGGGCA ATAGTGCAGGTAATAAAGCACCCTTAAATGCCAACAGCATCATTGACGCC CCGGGCTTCCTCAAGCAGGCGCAATCACCGCAGCAGCAGCATTCCTCCCT GTCACTCCAACGCAACAGCATCGCCTTACGCCTTCTACACTCGCCCATGT CAGCATTGGTCCTTCAGGTAGAATCAGGTGGGCTGGCTGCAGCCAAGGAG GATCTGTGGCATCGTGGAGTAAAGTTTGAGGAGATAGGAGGCACGGGTGC GGCAGAGGGACAGATTTTGCTTTCCTCTCCGCATTTGCATGGCTTGGATG TACGGATCTGTGATGGTGAGGCAGCTCTTTCTCCTTTTTTCAACGAGGGA GATGAGGTCCTGTGCGAGCACGTACTTGAGGAGCTGAATCCTGCAATTTC CAAATCGCTGGCCGCCGTGGGGGAAGGTTGGAAGCAAGCCTCATCACCCG CCGCGGCGTACCGACAAATGGGAACGGGTATGGGGGACTGCTGGTCGGAG TTCCGCTCTCAATTGAAGCGGCCTGGGGGGTTCTTCATGTCTTCCTCATC ATCGTTTGGGTCCTCTTCAAAGTGA
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Coding sequence (CDS) from alignment at chr7:600642..601766-

>NO07G02050.1 ID=NO07G02050.1|Name=NO07G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr7:600642..601766- (Nannochloropsis oceanica)
ATGACCACCACCACCACAGCACTTTTACGCCTCCGCTACATTGCTTCCAC
CAATACTCAAGCGAACGCAATTTGCGAAGAGCTTGCCTTGGCTCTCCGCC
TGTCTACATCTCAGGCCTCCTCCTCTAATGCATCGCCCCACTCTTGTCTG
CAATTGGGTAATGCATTGCTTGAATTTACGCCCTTGCCTCTTTGGATGAC
TTTGGCCAGACATTCAACCATGCTGAAGCGCCCACAAGTGGCGCGGCTGT
GTGGTATTGATGTTTTCACAAATTCCGCTATCATGACCCCTGCCCCCTTG
TCTTCTTCATACCACGACGCGCGGGCTTGGCTACTCGAGGACCGACCCAT
AGTCACCCCAACAGTGCGTACCGTTCCTTCGACCAGCAGCGTATCCTTGG
CTTCCACCATGAGTCCGCAAGTACGAGAAATCGTGCTAGGGGCGGGTGCG
AATTTGGCCGAGCTGGCCAGCATCATCACGGATGAAGTCGGTGCTCATCC
ATGCCCAGGCCTGCCACATGTCTATGCTTTACACGACGGAATGAAGGGCA
ATAGTGCAGGTAATAAAGCACCCTTAAATGCCAACAGCATCATTGACGCC
CCGGGCTTCCTCAAGCAGGCGCAATCACCGCAGCAGCAGCATTCCTCCCT
GTCACTCCAACGCAACAGCATCGCCTTACGCCTTCTACACTCGCCCATGT
CAGCATTGGTCCTTCAGGTAGAATCAGGTGGGCTGGCTGCAGCCAAGGAG
GATCTGTGGCATCGTGGAGTAAAGTTTGAGGAGATAGGAGGCACGGGTGC
GGCAGAGGGACAGATTTTGCTTTCCTCTCCGCATTTGCATGGCTTGGATG
TACGGATCTGTGATGGTGAGGCAGCTCTTTCTCCTTTTTTCAACGAGGGA
GATGAGGTCCTGTGCGAGCACGTACTTGAGGAGCTGAATCCTGCAATTTC
CAAATCGCTGGCCGCCGTGGGGGAAGGTTGGAAGCAAGCCTCATCACCCG
CCGCGGCGTACCGACAAATGGGAACGGGTATGGGGGACTGCTGGTCGGAG
TTCCGCTCTCAATTGAAGCGGCCTGGGGGGTTCTTCATGTCTTCCTCATC
ATCGTTTGGGTCCTCTTCAAAGTGA
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Synonyms
Publications