NO07G02000.1, NO07G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02000.1
Unique NameNO07G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length969
Alignment locationchr7:585045..586138 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:585045..586138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02000.1 vs.
Match: XP_005856403.1 (casein kinase II subunit beta [Nannochloropsis gaditana CCMP526]; EKU19960.1 casein kinase II subunit beta [Nannochloropsis gaditana CCMP526]; EWM27206.1 casein kinase 2 subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 236.9 bits (603), Expect = 8.900e-59
Identity = 123/220 (55.91%), Postives = 151/220 (68.64%), Query Frame = 0 
Query:   40 KEEDD---DDSLEALFSAPELEDRRTQSSWIHRFCRTPGNELFCVVPASFLADEFNWLGLPSDLAAINLLLGNVVDKGDKLTVSVSKDSRVPFAWDDVIAQRMYGLIHARFIVTQKGLNAMREKYEHGHFGRCPRLACDEQVLLPVGVRDEE-GRGRQEK---ADEGHSQRDYKGCVNLYCPRCRELYRPADPYHQQLNGAYWGTSFAHLFILAFPDLCL 253
            K EDD   D SLEAL S+PE +D   +SSWI +F R PG+E FC VP SFLA++FNWLGLP D+AA++LLL  V   G     S  +   +P   D+   QRMYGLIHARFIVTQKGL  MR+K++  HFGRCPRLAC  Q +LP+G  +EE G   Q K    ++ H     + CV ++CPRCRE+Y PAD  HQQLNGAYWG +FAHLF+LAFP+L L
Sbjct:  123 KPEDDKLEDSSLEALLSSPESDD---ESSWISQFVRAPGHEFFCAVPCSFLAEDFNWLGLPLDMAAVDLLLERVAKGG-----STKRCRSLPR--DEAATQRMYGLIHARFIVTQKGLQVMRDKFQQAHFGRCPRLACCGQPVLPLGNSNEEIGETDQNKGKVVEKRHRSDGARECVKIFCPRCREVYWPADASHQQLNGAYWGPTFAHLFLLAFPELNL 332
The following BLAST results are available for this feature:
BLAST of NO07G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856403.18.900e-5955.91casein kinase II subunit beta [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02000NO07G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02000.1NO07G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02000.1.cds1NO07G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02000.1.cds2NO07G02000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02000.1 ID=NO07G02000.1|Name=NO07G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
ATGTCATTTCCTCAGCCTCATGTCCCACCGCGTGGCAGTAGATCGATTGA
CAACGAGATAGAAGAGAGTGTAGATGCAAATGATTACGAGCATTACAAGT
CGGAGGAGGACGTCGGAAAAGAGGAGGACGACGACGATAGCCTCGAGGCC
CTTTTTTCAGCCCCAGAGCTGGAAGACAGGCGAACACAAAGCAGCTGGAT
ACATCGTTTTTGCCGTACCCCTGGGAATGAACTTTTTTGTGTCGTCCCTG
CTTCTTTTCTGGCGGATGAGTTCAACTGGTTGGGCCTCCCTTCAGACCTG
GCCGCCATCAACCTGCTGCTTGGCAACGTCGTCGACAAAGGCGACAAGTT
GACCGTCAGTGTCAGTAAGGACAGTAGGGTGCCATTTGCATGGGATGATG
TCATCGCTCAACGGATGTATGGACTCATTCATGCACGGTTTATCGTGACG
CAGAAAGGCCTAAACGCAATGCGGGAGAAATATGAGCACGGGCATTTCGG
CCGCTGTCCCCGCCTGGCCTGCGACGAACAAGTCCTGCTGCCTGTAGGTG
TTCGGGACGAAGAGGGGAGGGGAAGACAAGAAAAGGCGGACGAGGGGCAT
AGCCAGAGGGATTATAAAGGATGCGTCAATCTCTATTGCCCACGCTGTCG
AGAGCTGTACCGGCCGGCCGACCCGTATCATCAGCAGCTCAATGGCGCTT
ACTGGGGTACCAGCTTCGCTCATCTCTTTATACTGGCCTTTCCTGATCTA
TGTCTTGTGCCATCTTTACGCGATGATTCTTTGATGGGGGCAGAAAATGG
GGATCATTCGACGACGACAGGGATCAGTTCCAGGGGCAGCAGCAGCAGCA
GCAGCACGGGAAAAGCAGTGTCGGCCGTATGGCCGATCACCCTTGTCACT
GAGCAGACAAAGAATGGTCATTGTCAAAATGAAGTTCGGTTTCCGGGAGA
TTTCCCATTTGTGGTGTAA
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protein sequence of NO07G02000.1

>NO07G02000.1-protein ID=NO07G02000.1-protein|Name=NO07G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MSFPQPHVPPRGSRSIDNEIEESVDANDYEHYKSEEDVGKEEDDDDSLEA
LFSAPELEDRRTQSSWIHRFCRTPGNELFCVVPASFLADEFNWLGLPSDL
AAINLLLGNVVDKGDKLTVSVSKDSRVPFAWDDVIAQRMYGLIHARFIVT
QKGLNAMREKYEHGHFGRCPRLACDEQVLLPVGVRDEEGRGRQEKADEGH
SQRDYKGCVNLYCPRCRELYRPADPYHQQLNGAYWGTSFAHLFILAFPDL
CLVPSLRDDSLMGAENGDHSTTTGISSRGSSSSSSTGKAVSAVWPITLVT
EQTKNGHCQNEVRFPGDFPFVV*
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mRNA from alignment at chr7:585045..586138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02000.1 ID=NO07G02000.1|Name=NO07G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp|location=Sequence derived from alignment at chr7:585045..586138- (Nannochloropsis oceanica)
ATGTCATTTCCTCAGCCTCATGTCCCACCGCGTGGCAGTAGATCGATTGA
CAACGAGATAGAAGAGAGTGTAGATGCAAATGATTACGAGCATTACAAGT
CGGAGGAGGACGTCGGAAAAGAGGAGGACGACGACGATAGCCTCGAGGCC
CTTTTTTCAGCCCCAGAGCTGGAAGACAGGCGAACACAAAGCAGCTGGAT
ACATCGTTTTTGCCGTACCCCTGGGAATGAACTTTTTTGTGTCGTCCCTG
CTTCTTTTCTGGCGGATGAGTTCAACTGGTTGGGCCTCCCTTCAGACCTG
GCCGCCATCAACCTGCTGCTTGGCAACGTCGTCGACAAAGGCGACAAGTT
GACCGTCAGTGTCAGTAAGGACAGTAGGGTGCCATTTGCATGGGATGATG
TCATCGCTCAACGGATGTATGGACTCATTCATGCACGGTTTATCGTGACG
CAGAAAGGCCTAAACGCAATGCGGGAGAAATATGAGCACGGGCATTTCGG
CCGCTGTCCCCGCCTGGCCTGCGACGAACAAGTCCTGCTGCCTGTAGGTG
TTCGGGACGAAGAGGGGAGGGGAAGACAAGAAAAGGCGGACGAGGGGCAT
AGCCAGAGGGATTATAAAGGATGCGTCAATCTCTATTGCCCACGCTGTCG
AGAGCTGTACCGGCCGGCCGACCCGTATCATCAGCAGCTCAATGGCGCTT
ACTGGGGTACCAGCTTCGCTCATCTCTTTATACTGGCCTTTCCTGATCTA
TGTCTTGTGCCATCTTTACGCGATGATTCTTTGATGGGGGCAGAAAATGG
GGATCATTCGACGACGACAGGGATCAGTTCCAGGGGCAGCAGCAGCAGCA
GCAGCACGGGAAAGTATGTGCCGCGGGTATTTGGCTTTCGTGTAGAAGTT
GATTGCAAAAGGAACAAAATCCTGTGGCCCGGATATCATAAGGGAAGAAC
TGCAGCAGACTCCAATCCTCCGCCACTGTATCCCGCAGAGCAGTGTCGGC
CGTATGGCCGATCACCCTTGTCACTGAGCAGACAAAGAATGGTCATTGTC
AAAATGAAGTTCGGTTTCCGGGAGATTTCCCATTTGTGGTGTAA
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Coding sequence (CDS) from alignment at chr7:585045..586138-

>NO07G02000.1 ID=NO07G02000.1|Name=NO07G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr7:585045..586138- (Nannochloropsis oceanica)
ATGTCATTTCCTCAGCCTCATGTCCCACCGCGTGGCAGTAGATCGATTGA
CAACGAGATAGAAGAGAGTGTAGATGCAAATGATTACGAGCATTACAAGT
CGGAGGAGGACGTCGGAAAAGAGGAGGACGACGACGATAGCCTCGAGGCC
CTTTTTTCAGCCCCAGAGCTGGAAGACAGGCGAACACAAAGCAGCTGGAT
ACATCGTTTTTGCCGTACCCCTGGGAATGAACTTTTTTGTGTCGTCCCTG
CTTCTTTTCTGGCGGATGAGTTCAACTGGTTGGGCCTCCCTTCAGACCTG
GCCGCCATCAACCTGCTGCTTGGCAACGTCGTCGACAAAGGCGACAAGTT
GACCGTCAGTGTCAGTAAGGACAGTAGGGTGCCATTTGCATGGGATGATG
TCATCGCTCAACGGATGTATGGACTCATTCATGCACGGTTTATCGTGACG
CAGAAAGGCCTAAACGCAATGCGGGAGAAATATGAGCACGGGCATTTCGG
CCGCTGTCCCCGCCTGGCCTGCGACGAACAAGTCCTGCTGCCTGTAGGTG
TTCGGGACGAAGAGGGGAGGGGAAGACAAGAAAAGGCGGACGAGGGGCAT
AGCCAGAGGGATTATAAAGGATGCGTCAATCTCTATTGCCCACGCTGTCG
AGAGCTGTACCGGCCGGCCGACCCGTATCATCAGCAGCTCAATGGCGCTT
ACTGGGGTACCAGCTTCGCTCATCTCTTTATACTGGCCTTTCCTGATCTA
TGTCTTGTGCCATCTTTACGCGATGATTCTTTGATGGGGGCAGAAAATGG
GGATCATTCGACGACGACAGGGATCAGTTCCAGGGGCAGCAGCAGCAGCA
GCAGCACGGGAAAAGCAGTGTCGGCCGTATGGCCGATCACCCTTGTCACT
GAGCAGACAAAGAATGGTCATTGTCAAAATGAAGTTCGGTTTCCGGGAGA
TTTCCCATTTGTGGTGTAA
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Synonyms
Publications