NO07G01950.2, NO07G01950.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01950.2
Unique NameNO07G01950.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr7:569015..570964 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:569015..570964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01950.2 vs.
Match: EWM27227.1 (tubby-like protein [Nannochloropsis gaditana])

HSP 1 Score: 447.2 bits (1149), Expect = 5.300e-122
Identity = 210/277 (75.81%), Postives = 237/277 (85.56%), Query Frame = 0 
Query:  118 SNFFCPVFLSSLLTSQESGHAREYITDECLLPCPTLKRWSTCNVVKDGKTAFRMYLDETHTRFMLSAKRVGDSFYISQYESFPDSVDDVPDLYYCAVLRTCSEGHFKLFLNGCEACDRKTDKYTCGSGDRCDDRQLLAEINHSVRRVKEANADMRCLSIKLPKIHEDKQSREVWCPRMNQLRRQVGDLDKAGHVRLMNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLICMMAGQDKREGVLQFGKTRKRRYALDFRHPISPLQAFGICLSLFKWNI 395
            SNF   +     L   ESGHAREYIT+ECLLPCPT+K+WSTCNV+K+GK+ FRMYLDE   RF+LSAKRVGDSF+ISQYESFP+S++ VP++  CAVLRTCSEG+FKLFLNGCEACD+K DKYTCGSG   D+RQLLAEINHSV+RVKEANADMRCLS+KLP++HED+Q+R+VWCPRM Q RR      K  H RL NKLPEWNEALQSLVLRFNKGRVLAPSAKNFLIC + GQD  EGVLQFGKTRKRRYALDFRHP+SPLQAFGICLS F WN+
Sbjct:   58 SNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWCPRMEQARRSNNAELKTRHFRLHNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLIC-LDGQDNGEGVLQFGKTRKRRYALDFRHPVSPLQAFGICLSFFNWNV 333
The following BLAST results are available for this feature:
BLAST of NO07G01950.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27227.15.300e-12275.81tubby-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01950NO07G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01950.2NO07G01950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01950.2.cds1NO07G01950.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01950.2.cds2NO07G01950.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01950.2.cds3NO07G01950.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01950.2 ID=NO07G01950.2|Name=NO07G01950.2|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ACAGAGCAAGCGGGCCTCTTCTTGGCCTTGCTTTGGAGGAGGACCGAGGA
GGACGGGACGCACACTTGTGTAAACAGCCATCAGGAGCACTACAACCGGG
AATAGAAATACATAACATGGCAGACATGCACTCGACATCGGCAGCTGGTG
AGCTCGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCA
GACAAGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGG
GGAGAAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCT
TTTACGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGAC
ATGCTGGTAAGGACCAAGGCCGGAGAATCTGCGCAACTGGCGTGGCACCA
GATTTTGGCTCCCAATGCTCGACAATTACATCCATTCCAACTCGACGATT
TCACCGACATCCCATTCTCCAATTTCTTCTGCCCCGTCTTCTTATCATCT
CTTCTGACTTCACAGGAAAGTGGACATGCGCGTGAATACATTACCGACGA
GTGTCTGCTGCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCG
TCAAGGACGGCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACC
CGCTTTATGCTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCA
GTACGAATCCTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACT
GCGCGGTGCTACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAAC
GGCTGTGAAGCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGG
GGATCGATGCGATGACCGTCAGCTCTTGGCGGAGATCAATCATTCCGTGC
GAAGAGTCAAGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTG
CCCAAGATTCACGAAGACAAACAGTCCAGGGAGGTTTGGTGCCCCAGAAT
GAACCAATTGCGGAGGCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCC
GCTTGATGAATAAGCTTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTC
CTCCGATTCAATAAGGGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTT
GATATGTATGATGGCTGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTG
GAAAGACTCGCAAAAGGCGGTATGCTTTGGACTTCCGTCATCCTATCAGT
CCTCTGCAGGCTTTTGGGATCTGTCTTTCATTATTTAAATGGAACATCTA
GGGTGGAGACTGTGTGTGTATGTGCGGTGCAGATCGTACGGTCTCACCGG
AAAGGTCAAGGTGAAGATCCACCTATGACTTTTTTTTAGGGCCGGCACGG
CTAGTGGCTTTCTCGATACATCCAGTAGACAAAATTTTAATGATTGAGGG
GAAGGAGTACAGGAAGTAGTAAAATGAATCGAATTGCTAACGAACAAAAT
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protein sequence of NO07G01950.2

>NO07G01950.2-protein ID=NO07G01950.2-protein|Name=NO07G01950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MADMHSTSAAGELEELMQDTVKFIGGVADKLWTAGTSAKDMLLDGEKKGD
GNKSKERSSLGFYECNGVMETKSFEDLDMLVRTKAGESAQLAWHQILAPN
ARQLHPFQLDDFTDIPFSNFFCPVFLSSLLTSQESGHAREYITDECLLPC
PTLKRWSTCNVVKDGKTAFRMYLDETHTRFMLSAKRVGDSFYISQYESFP
DSVDDVPDLYYCAVLRTCSEGHFKLFLNGCEACDRKTDKYTCGSGDRCDD
RQLLAEINHSVRRVKEANADMRCLSIKLPKIHEDKQSREVWCPRMNQLRR
QVGDLDKAGHVRLMNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLICMMA
GQDKREGVLQFGKTRKRRYALDFRHPISPLQAFGICLSLFKWNI*
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mRNA from alignment at chr7:569015..570964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01950.2 ID=NO07G01950.2|Name=NO07G01950.2|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp|location=Sequence derived from alignment at chr7:569015..570964- (Nannochloropsis oceanica)
ACAGAGCAAGCGGGCCTCTTCTTGGCCTTGCTTTGGAGGAGGACCGAGGA
GGACGGGACGCACACTTGTGTAAACAGCCATCAGGAGCACTACAACCGGG
AATAGAAATACATAACATGGCAGACATGCACTCGACATCGGCAGCTGGTG
AGCTCGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCA
GACAAGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGG
GGAGAAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCT
TTTACGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGAC
ATGCTGGTAAGGACCAAGGCCGGAGAATCTGCGCAACTGGCGTGGCACCA
GATTTTGGCTCCCAATGCTCGACAATTACATCCATTCCAACTCGACGATT
TCACCGACATCCCATTCTCCAATTTCTTCTGCCCCGTCTTCTTATCATCT
CTTCTGACTTCACAGGAAAGTGGACATGCGCGTGAATACATTACCGACGA
GTGTCTGCTGCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCG
TCAAGGACGGCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACC
CGCTTTATGCTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCA
GTACGAATCCTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACT
GCGCGGTGCTACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAAC
GGCTGTGAAGCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGG
GGATCGATGCGATGACCGTCAGCTCTTGGCGGAGATCAATCATGTAAGCG
TTCCTGTCTCTCTTGGAGGATGGAACTTTATTTGAATGTGGAATGACGTC
GTACGTCAGAGAAGTGAAACATGAGGCAAACTTCAAATGATTGCGTCCCT
CATTCTCTCCTTGAACTAGAAACGAGTGTCACTTTTCCCATGGTATAACA
TTGAGGACCTCCACTGTCGCATCCTCAATTTGACTGAATACATTCTTTCA
TCACCTCTTTACCCTTCTCCTACCCGTCCCCATAGTCCGTGCGAAGAGTC
AAGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAAGAT
TCACGAAGACAAACAGTCCAGGGAGGTTTGGTGGTAAGTTTCATTCATAC
TTACATACGGGCGTACGTGTATGTGAGACATCCATGTCTAATTTCTCCTT
GATGACTTTTGATGTCATAAGAGGGGAAAGGATGATGTATGGGAAGAGGA
AAATGTTAGAGAGGATCTGTCAACCAATCATCTTCTCAACCTTGCCCCTC
TTCTTTCTTCTCCCCCCTTAAATCCAATTCCTACCACACAGCCCCAGAAT
GAACCAATTGCGGAGGCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCC
GCTTGATGAATAAGCTTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTC
CTCCGATTCAATAAGGGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTT
GATATGTATGATGGCTGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTG
GAAAGACTCGCAAAAGGCGGTATGCTTTGGACTTCCGTCATCCTATCAGT
CCTCTGCAGGCTTTTGGGATCTGTCTTTCATTATTTAAATGGAACATCTA
GGGTGGAGACTGTGTGTGTATGTGCGGTGCAGATCGTACGGTCTCACCGG
AAAGGTCAAGGTGAAGATCCACCTATGACTTTTTTTTAGGGCCGGCACGG
CTAGTGGCTTTCTCGATACATCCAGTAGACAAAATTTTAATGATTGAGGG
GAAGGAGTACAGGAAGTAGTAAAATGAATCGAATTGCTAACGAACAAAAT
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Coding sequence (CDS) from alignment at chr7:569015..570964-

>NO07G01950.2 ID=NO07G01950.2|Name=NO07G01950.2|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr7:569015..570964- (Nannochloropsis oceanica)
ATGGCAGACATGCACTCGACATCGGCAGCTGGTGAGCTCGAAGAGCTGAT
GCAGGACACAGTCAAGTTTATCGGTGGTGTGGCAGACAAGCTTTGGACTG
CGGGGACCTCGGCCAAGGACATGCTGTTGGATGGGGAGAAGAAGGGAGAT
GGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCTTTTACGAATGCAATGG
TGTCATGGAGACCAAGTCGTTTGAAGATCTGGACATGCTGGTAAGGACCA
AGGCCGGAGAATCTGCGCAACTGGCGTGGCACCAGATTTTGGCTCCCAAT
GCTCGACAATTACATCCATTCCAACTCGACGATTTCACCGACATCCCATT
CTCCAATTTCTTCTGCCCCGTCTTCTTATCATCTCTTCTGACTTCACAGG
AAAGTGGACATGCGCGTGAATACATTACCGACGAGTGTCTGCTGCCCTGT
CCGACCCTGAAGCGGTGGTCGACCTGCAACGTCGTCAAGGACGGCAAGAC
CGCCTTTCGCATGTACCTAGATGAAACTCATACCCGCTTTATGCTAAGCG
CCAAGCGAGTGGGTGACTCCTTTTACATTTCCCAGTACGAATCCTTCCCC
GATAGCGTGGATGACGTGCCCGACCTTTATTACTGCGCGGTGCTACGGAC
CTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAACGGCTGTGAAGCGTGCG
ATAGAAAGACAGACAAATACACGTGTGGCTCCGGGGATCGATGCGATGAC
CGTCAGCTCTTGGCGGAGATCAATCATTCCGTGCGAAGAGTCAAGGAGGC
TAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAAGATTCACGAAG
ACAAACAGTCCAGGGAGGTTTGGTGCCCCAGAATGAACCAATTGCGGAGG
CAGGTAGGAGACCTCGACAAAGCCGGGCACGTCCGCTTGATGAATAAGCT
TCCCGAATGGAACGAAGCACTGCAAAGTCTAGTCCTCCGATTCAATAAGG
GAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTTGATATGTATGATGGCT
GGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTGGAAAGACTCGCAAAAG
GCGGTATGCTTTGGACTTCCGTCATCCTATCAGTCCTCTGCAGGCTTTTG
GGATCTGTCTTTCATTATTTAAATGGAACATCTAG
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Synonyms
Publications