NO07G01940.1, NO07G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01940.1
Unique NameNO07G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1566
Alignment locationchr7:566860..568603 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:566860..568603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01940.1 vs.
Match: EWM27196.1 (nudix hydrolase 13 [Nannochloropsis gaditana])

HSP 1 Score: 241.1 bits (614), Expect = 3.500e-60
Identity = 122/179 (68.16%), Postives = 139/179 (77.65%), Query Frame = 0 
Query:    1 MLTTRPMSTTPRMGRQLQRYEGDVRLISGCIPLTQDGNVVLISSRSGRWILPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGEACQLLLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALREL-LQIL-----------------PHYQLHGAGSH 162
            ML  RP+STTPRMGRQLQRY G+VRLI+GCIPLT DGNVVLISSR+G WILPKGGWERDETAREAAARETYEE GV G V  EP +E SYR+KRGE C LLLF+MEV+E+L +WPESSVR+R+L SLS+AI++CGKEEHR AL  + LQ L                  H +LHGAGSH
Sbjct:    1 MLVARPVSTTPRMGRQLQRYNGNVRLITGCIPLTSDGNVVLISSRTGDWILPKGGWERDETAREAAARETYEEGGVHGLVHAEPFSETSYRNKRGEECHLLLFVMEVSELLPQWPESSVRRRRLCSLSEAIDICGKEEHRAALLSIKLQGLNTLFTGEESQEEDSRREGHLELHGAGSH 179
The following BLAST results are available for this feature:
BLAST of NO07G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27196.13.500e-6068.16nudix hydrolase 13 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01940NO07G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01940.1NO07G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01940.1.cds1NO07G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01940.1.cds2NO07G01940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01940.1 ID=NO07G01940.1|Name=NO07G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp
ACAGGCTCTCCAGCCGCCGTCCCCCTCCAGTGTTGCTCCTGAGCAGCCTA
CGAGAAGCATCAAGAATGCGTCTGGTTTAGCCTCGTCTAGGTGAGCCTTA
GTGCACAAGACACCACACACGACTCCACACACTACCACCGCGACCCCAGC
ACCAGTACCAATAGCGGCACCAACATCATTATTGACATTCGCCCTCAGCA
GACCCGAGCGAACCAGCTTCCTTCAGAGCGAGGAGACAAGAAACTATGCC
CTGCACTTCAGGCTAAACCGCTAGTCTGTCTCCCCGATTCCAAGCCCGGA
GGCAAACATATACTCTACACGTGCAGAGAGCAGAGATATTAAAGAGGGTC
TGAAACTGTGGTCGACTGAGAGCGAAAGAAACGTCCCAATAACGACACCG
AAGGATAAAGATAGACAAGCGTGTATAGAATCAGAACTAGAAGGTGAAAA
AAAAAGGAGGAACGATCGACAAGCTACGAAGCAACGAACATGCTGACTAC
AAGGCCAATGTCGACAACTCCTCGCATGGGGAGGCAGCTGCAGCGTTACG
AAGGCGATGTGCGGCTTATCAGTGGATGCATTCCCCTGACGCAAGATGGC
AACGTCGTCTTAATCAGCTCGAGGAGTGGAAGATGGATTCTTCCCAAGGG
AGGATGGGAAAGGGACGAGACAGCGCGGGAGGCAGCGGCCAGGGAGACAT
ACGAGGAGAGTGGAGTGCGTGGGTTTGTGGGCCTTGAACCTTTGGCTGAA
ATTTCATATCGAAGCAAGAGAGGTGAGGCGTGCCAACTGTTGCTGTTCAT
GATGGAGGTGACAGAGATACTGACGGAGTGGCCTGAATCTTCGGTGCGGC
AGCGGAAGCTTTTCTCCTTGAGCGACGCTATCAACGTGTGTGGAAAGGAG
GAGCACCGAGGCGCGCTACGTGAACTTTTGCAAATCTTGCCACATTACCA
GCTGCACGGTGCAGGTAGCCACCTTGACACCAACTTTGGGCCCAGGCTGA
GAGCTGATGCCGCGATGCCAACGGTGGCAACATGTACCCGCAACAGCAGC
AGCGCGATGCAACAGGTGGCAACATGTGCCCCCAGCAGCAGCGGCAGCAG
CAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCGGTGGGAATGTGGCGG
GGCCCATGTCCATCTCCTCCAGGCGCTTGGTTGTCGATGACCAAAAGGAG
TAGGCCGTGCAGAAACAAGAACAAGGAATAAGAAGAAGACATTGTTGATA
TATTATAAAAAGGAGGAAGGGCTTAAGGGTTTACTTAGAATGTGCGGACA
GGTTTCTGGGACATTAATGGCAGATACGGAGAAAAGAGTCAAAGGTAGAG
AACTTTTAATGTGTAGTAGACATTTTTAATCATTTAATTTTATTCAGGTC
TGGATGGTTTTGATGAACACCAAGAAAGGAGCTCGGCTGCGTTGTCCTCC
GAGGCAGGAGGTTGGTTTTGACGGGAGTAGCAACGATGAAGTGAAACAAC
CTTGAAGCGGTTGGAGGATGTGTCCTCTAGTTCAGGCTGGTCACTGCTAC
TCTTAATTCTCGCTCT
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protein sequence of NO07G01940.1

>NO07G01940.1-protein ID=NO07G01940.1-protein|Name=NO07G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MLTTRPMSTTPRMGRQLQRYEGDVRLISGCIPLTQDGNVVLISSRSGRWI
LPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGEACQL
LLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQIL
PHYQLHGAGSHLDTNFGPRLRADAAMPTVATCTRNSSSAMQQVATCAPSS
SGSSSSSSSSSSSSSGGNVAGPMSISSRRLVVDDQKE*
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mRNA from alignment at chr7:566860..568603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01940.1 ID=NO07G01940.1|Name=NO07G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1744bp|location=Sequence derived from alignment at chr7:566860..568603- (Nannochloropsis oceanica)
ACAGGCTCTCCAGCCGCCGTCCCCCTCCAGTGTTGCTCCTGAGCAGCCTA
CGAGAAGCATCAAGAATGCGTCTGGTTTAGCCTCGTCTAGGTGAGCCTTA
GTGCACAAGACACCACACACGACTCCACACACTACCACCGCGACCCCAGC
ACCAGTACCAATAGCGGCACCAACATCATTATTGACATTCGCCCTCAGCA
GACCCGAGCGAACCAGCTTCCTTCAGAGCGAGGAGACAAGAAACTATGCC
CTGCACTTCAGGCTAAACCGCTAGTCTGTCTCCCCGATTCCAAGCCCGGA
GGCAAACATATACTCTACACGTGCAGAGAGCAGAGATATTAAAGAGGGTC
TGAAACTGTGGTCGACTGAGAGCGAAAGAAACGTCCCAATAACGACACCG
AAGGATAAAGATAGACAAGCGTGTATAGAATCAGAACTAGAAGGTGAAAA
AAAAAGGAGGAACGATCGACAAGCTACGAAGCAACGAACATGCTGACTAC
AAGGCCAATGTCGACAACTCCTCGCATGGGGAGGCAGCTGCAGCGTTACG
AAGGCGATGTGCGGCTTATCAGTGGGTACGTTTACTTGGGAGACTTTCGC
GCTGAAAGTGATTGAGCGTAAGCCTATTTACCACTAGGTAAACACCAGTT
GGCCCGCACACTTCTACACTACTTGAATCTTTCACGGCAAAAACAGTATC
AATGAACTTACCTCCCACTCTTTTTCCCCCTCCCACGATACTTCCTTCCA
CAGATGCATTCCCCTGACGCAAGATGGCAACGTCGTCTTAATCAGCTCGA
GGAGTGGAAGATGGATTCTTCCCAAGGGAGGATGGGAAAGGGACGAGACA
GCGCGGGAGGCAGCGGCCAGGGAGACATACGAGGAGAGTGGAGTGCGTGG
GTTTGTGGGCCTTGAACCTTTGGCTGAAATTTCATATCGAAGCAAGAGAG
GTGAGGCGTGCCAACTGTTGCTGTTCATGATGGAGGTGACAGAGATACTG
ACGGAGTGGCCTGAATCTTCGGTGCGGCAGCGGAAGCTTTTCTCCTTGAG
CGACGCTATCAACGTGTGTGGAAAGGAGGAGCACCGAGGCGCGCTACGTG
AACTTTTGCAAATCTTGCCACATTACCAGCTGCACGGTGCAGGTAGCCAC
CTTGACACCAACTTTGGGCCCAGGCTGAGAGCTGATGCCGCGATGCCAAC
GGTGGCAACATGTACCCGCAACAGCAGCAGCGCGATGCAACAGGTGGCAA
CATGTGCCCCCAGCAGCAGCGGCAGCAGCAGCAGCAGTAGCAGCAGCAGC
AGCAGCAGCAGCGGTGGGAATGTGGCGGGGCCCATGTCCATCTCCTCCAG
GCGCTTGGTTGTCGATGACCAAAAGGAGTAGGCCGTGCAGAAACAAGAAC
AAGGAATAAGAAGAAGACATTGTTGATATATTATAAAAAGGAGGAAGGGC
TTAAGGGTTTACTTAGAATGTGCGGACAGGTTTCTGGGACATTAATGGCA
GATACGGAGAAAAGAGTCAAAGGTAGAGAACTTTTAATGTGTAGTAGACA
TTTTTAATCATTTAATTTTATTCAGGTCTGGATGGTTTTGATGAACACCA
AGAAAGGAGCTCGGCTGCGTTGTCCTCCGAGGCAGGAGGTTGGTTTTGAC
GGGAGTAGCAACGATGAAGTGAAACAACCTTGAAGCGGTTGGAGGATGTG
TCCTCTAGTTCAGGCTGGTCACTGCTACTCTTAATTCTCGCTCT
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Coding sequence (CDS) from alignment at chr7:566860..568603-

>NO07G01940.1 ID=NO07G01940.1|Name=NO07G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr7:566860..568603- (Nannochloropsis oceanica)
ATGCTGACTACAAGGCCAATGTCGACAACTCCTCGCATGGGGAGGCAGCT
GCAGCGTTACGAAGGCGATGTGCGGCTTATCAGTGGATGCATTCCCCTGA
CGCAAGATGGCAACGTCGTCTTAATCAGCTCGAGGAGTGGAAGATGGATT
CTTCCCAAGGGAGGATGGGAAAGGGACGAGACAGCGCGGGAGGCAGCGGC
CAGGGAGACATACGAGGAGAGTGGAGTGCGTGGGTTTGTGGGCCTTGAAC
CTTTGGCTGAAATTTCATATCGAAGCAAGAGAGGTGAGGCGTGCCAACTG
TTGCTGTTCATGATGGAGGTGACAGAGATACTGACGGAGTGGCCTGAATC
TTCGGTGCGGCAGCGGAAGCTTTTCTCCTTGAGCGACGCTATCAACGTGT
GTGGAAAGGAGGAGCACCGAGGCGCGCTACGTGAACTTTTGCAAATCTTG
CCACATTACCAGCTGCACGGTGCAGGTAGCCACCTTGACACCAACTTTGG
GCCCAGGCTGAGAGCTGATGCCGCGATGCCAACGGTGGCAACATGTACCC
GCAACAGCAGCAGCGCGATGCAACAGGTGGCAACATGTGCCCCCAGCAGC
AGCGGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCGGTGG
GAATGTGGCGGGGCCCATGTCCATCTCCTCCAGGCGCTTGGTTGTCGATG
ACCAAAAGGAGTAG
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Synonyms
Publications