NO07G01930.1, NO07G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01930.1
Unique NameNO07G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1382
Alignment locationchr7:565102..566845 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:565102..566845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01930.1 vs.
Match: EWM27177.1 (RNA polymerase II subunit A [Nannochloropsis gaditana])

HSP 1 Score: 344.4 bits (882), Expect = 3.400e-91
Identity = 197/277 (71.12%), Postives = 219/277 (79.06%), Query Frame = 0 
Query:    1 MSTISKRPRHEGESHDDDEDEDEEDELSSDDEEVEQDQGDAGKNGAPVSSATS--SMPRPDSSNSLSGGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICYL 276
            MS+ SKRPR   E  +D+E +DEE ELSSD+E     + D  K   P  S     S   P    SL+ G       S  KL Y+LVCSSNMNRSMEAHAAFLNAGFTKV SLGTGRMVRLPAAT EGQ+SF FGTPYT+ILKELE Q++ D +LQ+FYRRTKLLDILRRNARIKTAPERLQ I+ L YDVI+CFD+RVYDAVQEDLQ REA+DLEPICVICIDTKDDPQQAV+AGRVAV+LAQ LEES DLAT+APEIVE FM +EGRRLLFQICYL
Sbjct:   26 MSSSSKRPRDYDEEREDEEYDDEE-ELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTG-------SNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
The following BLAST results are available for this feature:
BLAST of NO07G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27177.13.400e-9171.12RNA polymerase II subunit A [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01930NO07G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01930.1NO07G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01930.1.cds1NO07G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01930.1.cds2NO07G01930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01930.1.cds3NO07G01930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01930.1 ID=NO07G01930.1|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp
CCTCTCGCTCTTTATTATATTGATATGTTTTTCCGCGCACTGTCTTGCCC
CCTACACACATCCTGTCTCTACCACTCGACCACTCGCAACAGGAGACGTA
GGCTGTACTACACGACCGAGGATCGCACGATGACAAGAGCAGACCACCGC
AGAAGATAGCACGCGCATCCCGCGACCGGCTTAGTGTTCGCAACACTCCA
CCATGACGCTGGCGGTCGGGGTGGAAGGTGGCGTATGAGCCGCCGCGCTC
CATTGAGCCTCGCCGCCGCGAGTACGCGCCACCATTGCCAACCATGTTGT
TAACGTCTGAATGTTCTGAGCTAGGAGGGGACAGCCTATTGTTGTGCTGT
TGCTTCTGCTTTATCGTATCCAAAGATCATTCGGACGAGGCCATATTCTA
ACCCTCTCCGCTAATCCCCCGTTTTACGCAGAGATCATGTCAACAATAAG
CAAAAGACCACGCCACGAAGGAGAAAGCCACGATGATGACGAGGATGAGG
ACGAGGAGGATGAACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAA
GGCGATGCCGGCAAGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAAT
GCCACGCCCCGATAGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGC
CAGCACCGTCCTGTTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAAT
ATGAATCGATCTATGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTAC
TAAAGTAGTCAGTCTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGA
CCGCCGAAGGGCAAGTGTCGTTCTCATTTGGGACGCCATACACGGAAATA
TTGAAGGAGCTAGAGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTT
CTATCGACGGACCAAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTA
AGACGGCACCGGAACGGTTGCAGAATATTGAAAACCTGACTTACGATGTG
ATTGTATGTTTTGATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCA
GTGTCGGGAAGCCAGGGACTTGGAGCCGATCTGTGTCATCTGCATCGACA
CCAAGGACGACCCCCAACAAGCCGTCATTGCCGGCCGCGTCGCCGTTAAC
CTTGCTCAAAAACTGGAAGAAAGCGATGACCTCGCTACGGACGCCCCCGA
GATAGTAGAGACATTCATGGAGGAGGAAGGAAGGCGGCTGCTCTTCCAGA
TATGCTACTTGTAGTTTGAATAGCATTAGCAGCGACGGACGCGTGCTTAG
ATGTGACCAGTGCACACAAGCACATCAAGAAGGTAGTCAGGCAAGCAAGT
AAGGAAAAAAAAAATAATTGTTCACGCTAGCG
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protein sequence of NO07G01930.1

>NO07G01930.1-protein ID=NO07G01930.1-protein|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MSTISKRPRHEGESHDDDEDEDEEDELSSDDEEVEQDQGDAGKNGAPVSS
ATSSMPRPDSSNSLSGGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFL
NAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADA
KLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAV
QEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLA
TDAPEIVETFMEEEGRRLLFQICYL*
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mRNA from alignment at chr7:565102..566845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01930.1 ID=NO07G01930.1|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1744bp|location=Sequence derived from alignment at chr7:565102..566845- (Nannochloropsis oceanica)
CCTCTCGCTCTTTATTATATTGATATGTTTTTCCGCGCACTGTCTTGCCC
CCTACACACATCCTGTCTCTACCACTCGACCACTCGCAACAGGAGACGTA
GGCTGTACTACACGACCGAGGATCGCACGATGACAAGAGCAGACCACCGC
AGAAGATAGCACGCGCATCCCGCGACCGGCTTAGTGTTCGCAACACTCCA
CCATGACGCTGGCGGTCGGGGTGGAAGGTGGCGTATGAGCCGCCGCGCTC
CATTGAGCCTCGCCGCCGCGAGTACGCGCCACCATTGCCAACCATGTTGT
TAACGTCTGAATGTTCTGAGCTAGGAGGGGACAGCCTATTGTTGTGCTGT
TGCTTCTGCTTTATCGTATCCAAAGATCATTCGGACGAGGCCATATTCTA
ACCCTCTCCGCTAATCCCCCGTTTTACGCAGAGATCATGTCAACAATAAG
CAAAAGACCACGCCACGAAGGAGAAAGCCACGATGATGACGAGGATGAGG
ACGAGGAGGATGAACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAA
GGCGATGCCGGCAAGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAAT
GCCACGCCCCGATAGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGC
CAGCACCGTCCTGTTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAAT
ATGAATCGATCTATGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTAC
TAAAGTAGTCAGTCTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGA
CCGCCGAAGGGCAAGTGTCGTTCTCATTTGGGACGCCATACACGGAAATA
TTGAAGGAGCTAGAGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTT
CTATCGACGGACCAAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTA
AGACGGCACCGGAACGGTTGCAGAATATTGAAAACCTGACTTACGATGTG
ATTGTATGTTTTGATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCA
GGTGAGTGATGTTGAATGATTTTCCTCCCCATCATCCTTTCTGCTTCCAC
CCGTCCTTCATTTGGTCCTTCCTTTCTGCACCAACCTATTCTATCAACGT
CTTTTTGGATGTGACACACTCATGTATCGAAAATCATCTTACCCTTCCTC
TCCAATCTCCTTTCTCAATTCTCTCCCCAAACAGTGTCGGGAAGCCAGGG
ACTTGGAGCCGATCTGTGTCATCTGCATCGACACCAAGGACGACCCCCAA
CAAGCCGTCATTGCCGGCCGCGTCGCCGTTAACCTTGCTCAAAAAGTACG
ACTTATCTTGTAACAATGCCTTGATGTTGTGGGATGCACTCTTCCCTCCT
GCCTCCCTCCTCGAGCAGGATTTGTAGAATTACGTGATACGACACCCGCA
TCCCATGCCTTTTCCTTAACACGCTCCTTTAATTTTCTTTCCCCCACCCC
CTTCTATTCTTCATGCACACACAGCTGGAAGAAAGCGATGACCTCGCTAC
GGACGCCCCCGAGATAGTAGAGACATTCATGGAGGAGGAAGGAAGGCGGC
TGCTCTTCCAGATATGCTACTTGTAGTTTGAATAGCATTAGCAGCGACGG
ACGCGTGCTTAGATGTGACCAGTGCACACAAGCACATCAAGAAGGTAGTC
AGGCAAGCAAGTAAGGAAAAAAAAAATAATTGTTCACGCTAGCG
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Coding sequence (CDS) from alignment at chr7:565102..566845-

>NO07G01930.1 ID=NO07G01930.1|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr7:565102..566845- (Nannochloropsis oceanica)
ATGTCAACAATAAGCAAAAGACCACGCCACGAAGGAGAAAGCCACGATGA
TGACGAGGATGAGGACGAGGAGGATGAACTGAGCAGTGATGACGAAGAAG
TTGAGCAGGACCAAGGCGATGCCGGCAAGAATGGCGCCCCCGTCTCCTCC
GCCACCTCATCAATGCCACGCCCCGATAGCAGCAATAGCCTCAGTGGGGG
AGGAGCTGCTTTGCCAGCACCGTCCTGTTCGAAATTGAGTTATGCCTTGG
TGTGCTCGAGCAATATGAATCGATCTATGGAAGCCCATGCGGCCTTCTTG
AACGCAGGCTTTACTAAAGTAGTCAGTCTGGGAACTGGGAGGATGGTACG
TCTGCCGGCCGCGACCGCCGAAGGGCAAGTGTCGTTCTCATTTGGGACGC
CATACACGGAAATATTGAAGGAGCTAGAGGGACAAGCTCAGGCAGATGCG
AAGCTGCAAGAGTTCTATCGACGGACCAAGTTGTTAGACATTTTGAGGAG
GAACGCCAGGATTAAGACGGCACCGGAACGGTTGCAGAATATTGAAAACC
TGACTTACGATGTGATTGTATGTTTTGATATACGCGTTTATGACGCGGTG
CAGGAAGATTTGCAGTGTCGGGAAGCCAGGGACTTGGAGCCGATCTGTGT
CATCTGCATCGACACCAAGGACGACCCCCAACAAGCCGTCATTGCCGGCC
GCGTCGCCGTTAACCTTGCTCAAAAACTGGAAGAAAGCGATGACCTCGCT
ACGGACGCCCCCGAGATAGTAGAGACATTCATGGAGGAGGAAGGAAGGCG
GCTGCTCTTCCAGATATGCTACTTGTAG
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Synonyms
Publications