NO07G01920.1, NO07G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01920.1
Unique NameNO07G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1683
Alignment locationchr7:563331..565013 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:563331..565013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01920.1 vs.
Match: EWM27199.1 (Protein of unknown function DUF647 [Nannochloropsis gaditana])

HSP 1 Score: 594.3 bits (1531), Expect = 3.800e-166
Identity = 339/572 (59.27%), Postives = 397/572 (69.41%), Query Frame = 0 
Query:    1 MDDKAIGLHWWLPIILALFTTDAT-GAFTSSSSRLLLHRRGGSTMSAAASTAVFISESRPGSSNDDGKRRVYYGVDGGGHLVPLHASHKPLSSKTGAAALPAAD--ELQANAQASTLEPI-KSKQIRKIVQNSTIRTSLRLLALLRTIFLPVGYPHSVRPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGRAGATPLAATIQWIVRDGTAMMSGLVFTSLLSTNFGVNAKSWRLFADFSVDVGITLDMLAPLFPKRFLLLICLSSVCKSLCGISAGAANGAIVEHMAQTNNLAEVLAKGGAQHTAVSLFGLGFGMWFARVANQSPRRVWGAYIILTLVHLIANYAAMRVLAFTSINRHRLDVLLGSFWAGEGVPLPATVARRETILVNPRRW-----WWLPGGEGGRRG-GKGSSRSNEPVWKIRLGARVKDLTASVFKLNELQEHFQGESYMLNVVESFTTSQDEKEQSRKRKGISNTWPQVVVALREDATNLSLLKASFHAYLLQKRWREGGEEKG-------VTSLIRKTYEEACMSFPLFEKGLLRQGWNLERVLLSPEGWVYH 556
            M DK +   W LP+ILA+ T DAT  AF S    L  H+   S      +    ISESR GS+  DG   + YG++  G L+PL   H P  S+   A+  +    + +AN  +S +  I K  ++R IV+N+      RL  LL T+FLPVG+P SV PEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGR GATPLAAT+QWI RDG +MMSGLVFTS LSTNFGVNAKSWRLFADF VD+GITLDMLAPLFPK FLL ICL+SVCKSLCGI+AGA+NG IVEHMA+TNNLAEVLAKGGAQHTAVSLFGLGFGMWFARVANQSPRRVW AY +LT++HL ANYAAMRVLAFTSINR RL+VLL +F     V  PA VARRETI+V+  RW     W     +G RR   + +  ++ P+W IRLG RVKDLT     L ELQ  F  E YMLN+V  F      ++ +RK         Q+ VALREDATNL+LLKA  HA L+ +R  E  + K        ++S+I  TY+E C  FP   +GL RQGWNLERVLLSPEGW+YH
Sbjct:    1 MMDKRLTFPWLLPVILAVMTADATTDAFLS---HLPSHKGDPSMSMVNVADVALISESRSGSN--DGNFFISYGMEQNGRLIPLPVPHSPTLSRPSDASRVSTPHYDSRANRYSSIMWVIRKQSEVRSIVRNA----KRRLKTLLHTVFLPVGFPSSVAPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGREGATPLAATLQWITRDGASMMSGLVFTSFLSTNFGVNAKSWRLFADFMVDIGITLDMLAPLFPKNFLLCICLASVCKSLCGIAAGASNGNIVEHMARTNNLAEVLAKGGAQHTAVSLFGLGFGMWFARVANQSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSINRRRLNVLLTAFRENASVLSPAEVARRETIIVDVGRWRPPKLWTALFQKGKRRATAELAKDAHAPIWNIRLGVRVKDLTRFAEGLTELQRLFSQEQYMLNMVNVFDGELPTRKVTRK--------IQIAVALREDATNLTLLKACLHADLIARRGFEAVKRKKGTENIEIISSVISSTYQELCQCFPNMVQGLRRQGWNLERVLLSPEGWIYH 555
The following BLAST results are available for this feature:
BLAST of NO07G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27199.13.800e-16659.27Protein of unknown function DUF647 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01920NO07G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01920.1NO07G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01920.1.cds1NO07G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01920.1 ID=NO07G01920.1|Name=NO07G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp
ATGGATGACAAAGCCATAGGGCTGCACTGGTGGCTGCCGATTATCCTAGC
GCTGTTTACGACGGATGCAACGGGTGCTTTTACGAGCAGCAGCAGCCGCC
TGCTTCTTCACCGTCGAGGAGGGTCAACCATGTCTGCAGCTGCCTCCACG
GCCGTCTTCATCTCAGAAAGCCGGCCGGGGAGCTCCAACGACGATGGAAA
AAGACGTGTCTACTATGGAGTGGACGGAGGCGGGCATTTGGTGCCCCTTC
ATGCTTCACATAAGCCACTGTCGTCCAAAACAGGAGCTGCAGCTTTGCCA
GCGGCTGACGAACTCCAGGCAAATGCTCAAGCGAGCACCCTGGAGCCCAT
TAAAAGCAAACAGATCAGGAAAATTGTTCAAAACAGTACAATTCGCACGA
GCCTGCGGCTGCTGGCGCTCCTGCGGACTATATTTTTACCGGTGGGCTAT
CCTCATAGCGTGCGCCCCGAGTACCTCCGGTACCAACAATGGAATGTGGT
GCAAGACTTGAGCACTTACCTCCGCGGCATATTAGCCACGCAGGCTATCC
TTGAAGGAGTAGGTGTAGGTAGGGCAGGGGCAACGCCCTTGGCAGCGACC
ATCCAATGGATTGTACGAGACGGGACCGCGATGATGTCTGGCCTCGTGTT
CACCTCTCTCCTTAGCACCAATTTCGGGGTAAATGCGAAGAGCTGGCGGC
TGTTCGCGGACTTTTCGGTGGATGTGGGTATTACCTTGGACATGCTTGCC
CCTCTTTTTCCGAAGCGCTTTCTCCTTCTCATCTGTCTCTCCTCGGTTTG
TAAGAGCCTGTGTGGGATCTCGGCTGGGGCTGCGAATGGGGCCATAGTCG
AGCATATGGCTCAGACCAACAATCTTGCTGAAGTCCTCGCGAAAGGGGGG
GCACAACATACCGCTGTTAGCCTATTCGGGCTGGGCTTCGGCATGTGGTT
TGCACGGGTGGCAAACCAATCCCCTCGAAGGGTCTGGGGTGCTTATATAA
TTTTGACACTTGTCCATTTAATCGCCAACTATGCCGCAATGCGCGTGTTG
GCTTTCACCTCGATCAACCGTCATAGACTGGATGTTCTGCTTGGATCTTT
TTGGGCGGGGGAGGGTGTACCGTTGCCTGCAACAGTGGCGCGGCGAGAGA
CTATACTCGTGAATCCGAGGAGGTGGTGGTGGTTGCCCGGTGGCGAAGGA
GGAAGAAGAGGAGGAAAGGGGAGCAGTCGCAGCAATGAGCCGGTCTGGAA
AATCCGACTAGGGGCAAGAGTTAAGGACTTGACAGCCTCTGTTTTCAAGC
TCAATGAATTGCAAGAACATTTTCAGGGTGAGTCTTATATGCTTAATGTC
GTAGAAAGTTTCACGACGAGCCAAGACGAAAAAGAGCAGTCGCGAAAAAG
AAAAGGCATCAGCAATACATGGCCGCAGGTAGTGGTAGCCTTGAGAGAAG
ATGCCACAAACCTGTCGTTGCTCAAGGCATCTTTTCACGCCTACTTACTC
CAGAAGCGTTGGAGAGAAGGAGGGGAGGAGAAAGGGGTGACGTCCTTGAT
TCGAAAGACTTACGAGGAGGCGTGCATGAGCTTCCCATTGTTTGAGAAAG
GGCTTCTGCGACAAGGATGGAATTTGGAGCGGGTATTGCTGTCGCCCGAA
GGATGGGTGTATCACACGCAGGAAAAAGTATGA
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protein sequence of NO07G01920.1

>NO07G01920.1-protein ID=NO07G01920.1-protein|Name=NO07G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MDDKAIGLHWWLPIILALFTTDATGAFTSSSSRLLLHRRGGSTMSAAAST
AVFISESRPGSSNDDGKRRVYYGVDGGGHLVPLHASHKPLSSKTGAAALP
AADELQANAQASTLEPIKSKQIRKIVQNSTIRTSLRLLALLRTIFLPVGY
PHSVRPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGRAGATPLAAT
IQWIVRDGTAMMSGLVFTSLLSTNFGVNAKSWRLFADFSVDVGITLDMLA
PLFPKRFLLLICLSSVCKSLCGISAGAANGAIVEHMAQTNNLAEVLAKGG
AQHTAVSLFGLGFGMWFARVANQSPRRVWGAYIILTLVHLIANYAAMRVL
AFTSINRHRLDVLLGSFWAGEGVPLPATVARRETILVNPRRWWWLPGGEG
GRRGGKGSSRSNEPVWKIRLGARVKDLTASVFKLNELQEHFQGESYMLNV
VESFTTSQDEKEQSRKRKGISNTWPQVVVALREDATNLSLLKASFHAYLL
QKRWREGGEEKGVTSLIRKTYEEACMSFPLFEKGLLRQGWNLERVLLSPE
GWVYHTQEKV*
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mRNA from alignment at chr7:563331..565013+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01920.1 ID=NO07G01920.1|Name=NO07G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp|location=Sequence derived from alignment at chr7:563331..565013+ (Nannochloropsis oceanica)
ATGGATGACAAAGCCATAGGGCTGCACTGGTGGCTGCCGATTATCCTAGC
GCTGTTTACGACGGATGCAACGGGTGCTTTTACGAGCAGCAGCAGCCGCC
TGCTTCTTCACCGTCGAGGAGGGTCAACCATGTCTGCAGCTGCCTCCACG
GCCGTCTTCATCTCAGAAAGCCGGCCGGGGAGCTCCAACGACGATGGAAA
AAGACGTGTCTACTATGGAGTGGACGGAGGCGGGCATTTGGTGCCCCTTC
ATGCTTCACATAAGCCACTGTCGTCCAAAACAGGAGCTGCAGCTTTGCCA
GCGGCTGACGAACTCCAGGCAAATGCTCAAGCGAGCACCCTGGAGCCCAT
TAAAAGCAAACAGATCAGGAAAATTGTTCAAAACAGTACAATTCGCACGA
GCCTGCGGCTGCTGGCGCTCCTGCGGACTATATTTTTACCGGTGGGCTAT
CCTCATAGCGTGCGCCCCGAGTACCTCCGGTACCAACAATGGAATGTGGT
GCAAGACTTGAGCACTTACCTCCGCGGCATATTAGCCACGCAGGCTATCC
TTGAAGGAGTAGGTGTAGGTAGGGCAGGGGCAACGCCCTTGGCAGCGACC
ATCCAATGGATTGTACGAGACGGGACCGCGATGATGTCTGGCCTCGTGTT
CACCTCTCTCCTTAGCACCAATTTCGGGGTAAATGCGAAGAGCTGGCGGC
TGTTCGCGGACTTTTCGGTGGATGTGGGTATTACCTTGGACATGCTTGCC
CCTCTTTTTCCGAAGCGCTTTCTCCTTCTCATCTGTCTCTCCTCGGTTTG
TAAGAGCCTGTGTGGGATCTCGGCTGGGGCTGCGAATGGGGCCATAGTCG
AGCATATGGCTCAGACCAACAATCTTGCTGAAGTCCTCGCGAAAGGGGGG
GCACAACATACCGCTGTTAGCCTATTCGGGCTGGGCTTCGGCATGTGGTT
TGCACGGGTGGCAAACCAATCCCCTCGAAGGGTCTGGGGTGCTTATATAA
TTTTGACACTTGTCCATTTAATCGCCAACTATGCCGCAATGCGCGTGTTG
GCTTTCACCTCGATCAACCGTCATAGACTGGATGTTCTGCTTGGATCTTT
TTGGGCGGGGGAGGGTGTACCGTTGCCTGCAACAGTGGCGCGGCGAGAGA
CTATACTCGTGAATCCGAGGAGGTGGTGGTGGTTGCCCGGTGGCGAAGGA
GGAAGAAGAGGAGGAAAGGGGAGCAGTCGCAGCAATGAGCCGGTCTGGAA
AATCCGACTAGGGGCAAGAGTTAAGGACTTGACAGCCTCTGTTTTCAAGC
TCAATGAATTGCAAGAACATTTTCAGGGTGAGTCTTATATGCTTAATGTC
GTAGAAAGTTTCACGACGAGCCAAGACGAAAAAGAGCAGTCGCGAAAAAG
AAAAGGCATCAGCAATACATGGCCGCAGGTAGTGGTAGCCTTGAGAGAAG
ATGCCACAAACCTGTCGTTGCTCAAGGCATCTTTTCACGCCTACTTACTC
CAGAAGCGTTGGAGAGAAGGAGGGGAGGAGAAAGGGGTGACGTCCTTGAT
TCGAAAGACTTACGAGGAGGCGTGCATGAGCTTCCCATTGTTTGAGAAAG
GGCTTCTGCGACAAGGATGGAATTTGGAGCGGGTATTGCTGTCGCCCGAA
GGATGGGTGTATCACACGCAGGAAAAAGTATGA
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Coding sequence (CDS) from alignment at chr7:563331..565013+

>NO07G01920.1 ID=NO07G01920.1|Name=NO07G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1683bp|location=Sequence derived from alignment at chr7:563331..565013+ (Nannochloropsis oceanica)
ATGGATGACAAAGCCATAGGGCTGCACTGGTGGCTGCCGATTATCCTAGC
GCTGTTTACGACGGATGCAACGGGTGCTTTTACGAGCAGCAGCAGCCGCC
TGCTTCTTCACCGTCGAGGAGGGTCAACCATGTCTGCAGCTGCCTCCACG
GCCGTCTTCATCTCAGAAAGCCGGCCGGGGAGCTCCAACGACGATGGAAA
AAGACGTGTCTACTATGGAGTGGACGGAGGCGGGCATTTGGTGCCCCTTC
ATGCTTCACATAAGCCACTGTCGTCCAAAACAGGAGCTGCAGCTTTGCCA
GCGGCTGACGAACTCCAGGCAAATGCTCAAGCGAGCACCCTGGAGCCCAT
TAAAAGCAAACAGATCAGGAAAATTGTTCAAAACAGTACAATTCGCACGA
GCCTGCGGCTGCTGGCGCTCCTGCGGACTATATTTTTACCGGTGGGCTAT
CCTCATAGCGTGCGCCCCGAGTACCTCCGGTACCAACAATGGAATGTGGT
GCAAGACTTGAGCACTTACCTCCGCGGCATATTAGCCACGCAGGCTATCC
TTGAAGGAGTAGGTGTAGGTAGGGCAGGGGCAACGCCCTTGGCAGCGACC
ATCCAATGGATTGTACGAGACGGGACCGCGATGATGTCTGGCCTCGTGTT
CACCTCTCTCCTTAGCACCAATTTCGGGGTAAATGCGAAGAGCTGGCGGC
TGTTCGCGGACTTTTCGGTGGATGTGGGTATTACCTTGGACATGCTTGCC
CCTCTTTTTCCGAAGCGCTTTCTCCTTCTCATCTGTCTCTCCTCGGTTTG
TAAGAGCCTGTGTGGGATCTCGGCTGGGGCTGCGAATGGGGCCATAGTCG
AGCATATGGCTCAGACCAACAATCTTGCTGAAGTCCTCGCGAAAGGGGGG
GCACAACATACCGCTGTTAGCCTATTCGGGCTGGGCTTCGGCATGTGGTT
TGCACGGGTGGCAAACCAATCCCCTCGAAGGGTCTGGGGTGCTTATATAA
TTTTGACACTTGTCCATTTAATCGCCAACTATGCCGCAATGCGCGTGTTG
GCTTTCACCTCGATCAACCGTCATAGACTGGATGTTCTGCTTGGATCTTT
TTGGGCGGGGGAGGGTGTACCGTTGCCTGCAACAGTGGCGCGGCGAGAGA
CTATACTCGTGAATCCGAGGAGGTGGTGGTGGTTGCCCGGTGGCGAAGGA
GGAAGAAGAGGAGGAAAGGGGAGCAGTCGCAGCAATGAGCCGGTCTGGAA
AATCCGACTAGGGGCAAGAGTTAAGGACTTGACAGCCTCTGTTTTCAAGC
TCAATGAATTGCAAGAACATTTTCAGGGTGAGTCTTATATGCTTAATGTC
GTAGAAAGTTTCACGACGAGCCAAGACGAAAAAGAGCAGTCGCGAAAAAG
AAAAGGCATCAGCAATACATGGCCGCAGGTAGTGGTAGCCTTGAGAGAAG
ATGCCACAAACCTGTCGTTGCTCAAGGCATCTTTTCACGCCTACTTACTC
CAGAAGCGTTGGAGAGAAGGAGGGGAGGAGAAAGGGGTGACGTCCTTGAT
TCGAAAGACTTACGAGGAGGCGTGCATGAGCTTCCCATTGTTTGAGAAAG
GGCTTCTGCGACAAGGATGGAATTTGGAGCGGGTATTGCTGTCGCCCGAA
GGATGGGTGTATCACACGCAGGAAAAAGTATGA
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Synonyms
Publications