NO07G01890.1, NO07G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01890.1
Unique NameNO07G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length604
Alignment locationchr7:558262..559050 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:558262..559050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01890.1 vs.
Match: EWM27142.1 (nuclear transport [Nannochloropsis gaditana])

HSP 1 Score: 211.5 bits (537), Expect = 1.500e-51
Identity = 100/121 (82.64%), Postives = 109/121 (90.08%), Query Frame = 0
Query:    1 MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQKLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQLVASTPGQYYIHNQIFRLIYA 122
            MSADEIAGAF QHYYGTLD+NIAGLGALYRD SMLTFE QQFMG  NISQK+ GLGK+VHNVQ FDVQPS+DP NL+I V+GQ+KLDGQ+NPL F EFFQLVAS+PGQYYIHNQIFRL YA
Sbjct:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121          
The following BLAST results are available for this feature:
BLAST of NO07G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27142.11.500e-5182.64nuclear transport [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01890NO07G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01890.1NO07G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01890.1.cds1NO07G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01890.1.cds2NO07G01890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01890.1 ID=NO07G01890.1|Name=NO07G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=604bp
CCTCGTGCAATAAGGACAGGAGAAGGACCTGAGCGTGCGCGATAACACTC
AGTCGCGCGGCCAGCATCTACATCAGAAAAGTGCGCCCTGGGCAAGCAAT
GTCGGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCACTT
TAGACAATAACATCGCAGGACTGGGGGCTCTATATCGGGACAACTCAATG
CTGACGTTCGAGAGGCAGCAGTTCATGGGCACCGCCAACATATCGCAAAA
GCTGGTCGGCCTGGGTAAGGTCGTCCATAATGTGCAACATTTCGATGTGC
AGCCGTCAGTGGATCCGGGAAACCTAGTCATTCTTGTGCTTGGTCAAATC
AAGCTGGACGGGCAGGATAACCCCCTTCAGTTTTGCGAGTTCTTCCAGCT
TGTTGCCTCCACCCCTGGGCAGTACTACATTCACAATCAAATTTTCAGGC
TTATATACGCATAACCGAAAGAATCCTCTGGAGTGTCGTCGTTTGCGCCT
ATTCCCGGGAGAGAAAACACGTACTTACAGACGGTAAGGTGAAATCATTT
GGCAGTACGTTATGAGAATATGATGAAAAATAACGAATGGTACCCACATG
AAGA
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protein sequence of NO07G01890.1

>NO07G01890.1-protein ID=NO07G01890.1-protein|Name=NO07G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MSADEIAGAFVQHYYGTLDNNIAGLGALYRDNSMLTFERQQFMGTANISQ
KLVGLGKVVHNVQHFDVQPSVDPGNLVILVLGQIKLDGQDNPLQFCEFFQ
LVASTPGQYYIHNQIFRLIYA*
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mRNA from alignment at chr7:558262..559050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01890.1 ID=NO07G01890.1|Name=NO07G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=789bp|location=Sequence derived from alignment at chr7:558262..559050+ (Nannochloropsis oceanica)
CCTCGTGCAATAAGGACAGGAGAAGGACCTGAGCGTGCGCGATAACACTC AGTCGCGCGGCCAGCATCTACATCAGAAAAGTGCGCCCTGGGCAAGCAAT GTCGGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCACTT TAGACAATAACATCGCAGGACTGGGGGCTCTATATGTACGTCAGGCAACA GGGAAGGGAAAAACTATTGCCAGACACATACACATACACACACACACACA CACACACACACACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACATACATACACACACACACACCTCTGCGACTC CAACCCGCCAACTTCCACAGCGGGACAACTCAATGCTGACGTTCGAGAGG CAGCAGTTCATGGGCACCGCCAACATATCGCAAAAGCTGGTCGGCCTGGG TAAGGTCGTCCATAATGTGCAACATTTCGATGTGCAGCCGTCAGTGGATC CGGGAAACCTAGTCATTCTTGTGCTTGGTCAAATCAAGCTGGACGGGCAG GATAACCCCCTTCAGTTTTGCGAGTTCTTCCAGCTTGTTGCCTCCACCCC TGGGCAGTACTACATTCACAATCAAATTTTCAGGCTTATATACGCATAAC CGAAAGAATCCTCTGGAGTGTCGTCGTTTGCGCCTATTCCCGGGAGAGAA AACACGTACTTACAGACGGTAAGGTGAAATCATTTGGCAGTACGTTATGA GAATATGATGAAAAATAACGAATGGTACCCACATGAAGA
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Coding sequence (CDS) from alignment at chr7:558262..559050+

>NO07G01890.1 ID=NO07G01890.1|Name=NO07G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr7:558262..559050+ (Nannochloropsis oceanica)
ATGTCGGCCGACGAAATCGCTGGAGCCTTTGTCCAACACTATTATGGCAC
TTTAGACAATAACATCGCAGGACTGGGGGCTCTATATCGGGACAACTCAA
TGCTGACGTTCGAGAGGCAGCAGTTCATGGGCACCGCCAACATATCGCAA
AAGCTGGTCGGCCTGGGTAAGGTCGTCCATAATGTGCAACATTTCGATGT
GCAGCCGTCAGTGGATCCGGGAAACCTAGTCATTCTTGTGCTTGGTCAAA
TCAAGCTGGACGGGCAGGATAACCCCCTTCAGTTTTGCGAGTTCTTCCAG
CTTGTTGCCTCCACCCCTGGGCAGTACTACATTCACAATCAAATTTTCAG
GCTTATATACGCATAA
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Synonyms
Publications