NO07G01870.1, NO07G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01870.1
Unique NameNO07G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length630
Alignment locationchr7:553252..554052 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:553252..554052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01870.1 vs.
Match: CBJ26704.1 (similar to DEK oncogene (DNA binding) [Ectocarpus siliculosus])

HSP 1 Score: 130.6 bits (327), Expect = 5.800e-27
Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 0 
Query:    9 GSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLNRKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDRETLIGRLVKYLNKPVTLKEVGSTA---GASSKKKSRENPAAMAKKGSDGVK-RTLSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKAAK 203
            GSG+ L  I  V   L K+  DHDLLK+ H  +Y   G K  RKK IR+F+GFP     +    +++ ++KWTV  L+D  TL GLEKGGD+  ++ R+V +L  P   +  G  A     ++KK+         KK    VK R L+ YM++ ++ RA+V+   P LK TE+ +K+G+ W   S+ +K KY  +  K
Sbjct:    5 GSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAAKKRKSTGKGKKTKKAKREVKPRPLNGYMMFTREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKEKYKQQGIK 202
The following BLAST results are available for this feature:
BLAST of NO07G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26704.15.800e-2737.37similar to DEK oncogene (DNA binding) [Ectocarpus ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01870NO07G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01870.1NO07G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01870.1.cds1NO07G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01870.1.cds2NO07G01870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01870.1 ID=NO07G01870.1|Name=NO07G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
ATGTCTGAGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACAT
CGCCTATGTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGC
TCAAGTCGTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAAT
CGCAAGAAGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCT
CAATGGTGTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTG
TCTTGAAGGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGC
GAGACCTTGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTT
GAAGGAGGTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGG
AGAACCCTGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACT
TTGTCTTCTTATATGCTGTATGCCAAGGACGTCCGTGCTGAGGTGGTAGC
AGAGTTCCCCGCTCTCAAAGTCACAGAAATTGGGAGTAAGATCGGCGAGA
AATGGAGAGGGTTAAGCGAGGAGGAAAAGGCCAAGTACACGGCCAAGGCC
GCAAAGCTAAAGGCGGATGCCAACAAGTAA
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protein sequence of NO07G01870.1

>NO07G01870.1-protein ID=NO07G01870.1-protein|Name=NO07G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MSETQGGGGSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLN
RKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDR
ETLIGRLVKYLNKPVTLKEVGSTAGASSKKKSRENPAAMAKKGSDGVKRT
LSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKA
AKLKADANK*
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mRNA from alignment at chr7:553252..554052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01870.1 ID=NO07G01870.1|Name=NO07G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at chr7:553252..554052+ (Nannochloropsis oceanica)
ATGTCTGAGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACAT
CGCCTATGTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGC
TCAAGTCGTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAAT
CGCAAGAAGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCT
CAATGGTGTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTG
TCTTGAAGGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGC
GAGACCTTGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTT
GAAGGAGGTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGG
AGAACCCTGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACT
TTGTCTTCTTATATGGTGAGAAAGCTGAGGGGAGGGAGGGAGAAAGGAAG
GATGTTTGGCGGATCAGGGGAGGGGGAAAGAGCAAAGGTGGCACTCACCA
TCCATATGTAAACACACGTATAACGTCTCACTCATTATCTTCGTGGAATC
TTTCTTTTTCTTCTTTTATTTGTCTCCAACTTACAGCTGTATGCCAAGGA
CGTCCGTGCTGAGGTGGTAGCAGAGTTCCCCGCTCTCAAAGTCACAGAAA
TTGGGAGTAAGATCGGCGAGAAATGGAGAGGGTTAAGCGAGGAGGAAAAG
GCCAAGTACACGGCCAAGGCCGCAAAGCTAAAGGCGGATGCCAACAAGTA
A
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Coding sequence (CDS) from alignment at chr7:553252..554052+

>NO07G01870.1 ID=NO07G01870.1|Name=NO07G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr7:553252..554052+ (Nannochloropsis oceanica)
ATGTCTGAGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACAT
CGCCTATGTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGC
TCAAGTCGTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAAT
CGCAAGAAGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCT
CAATGGTGTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTG
TCTTGAAGGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGC
GAGACCTTGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTT
GAAGGAGGTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGG
AGAACCCTGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACT
TTGTCTTCTTATATGCTGTATGCCAAGGACGTCCGTGCTGAGGTGGTAGC
AGAGTTCCCCGCTCTCAAAGTCACAGAAATTGGGAGTAAGATCGGCGAGA
AATGGAGAGGGTTAAGCGAGGAGGAAAAGGCCAAGTACACGGCCAAGGCC
GCAAAGCTAAAGGCGGATGCCAACAAGTAA
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Synonyms
Publications