NO07G01860.1, NO07G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01860.1
Unique NameNO07G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length676
Alignment locationchr7:551458..552586 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:551458..552586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01860.1 vs.
Match: EWM27188.1 (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 253.1 bits (645), Expect = 7.300e-64
Identity = 135/196 (68.88%), Postives = 158/196 (80.61%), Query Frame = 0 
Query:    1 MSQVPWTRIREFKEEQERKKRREFEAALGRAQLQVPGQQDQQQSQGPATARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQGIKKGEAFGVMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVFSEATASTPSSTTSTT 197
            MSQVPWTRIREFKEEQERKKR + E+    ++ Q    Q + +SQG  T     F  RFK +YFKERL+FGGVVG+VTGAFFGGLDAVQGIKKG+AFGV+LN   +K KFS EH+GSAA +FSIFYSSYQGIKYI+KVAR E DWGNPATAA+ T+ PLL+S  FRRNVPYAVLLIGMDV S+A++S+PSS T T+
Sbjct:   36 MSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQETEE-NSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISDASSSSPSSGTRTS 230
The following BLAST results are available for this feature:
BLAST of NO07G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27188.17.300e-6468.88hypothetical protein Naga_100010g47 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01860NO07G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01860.1NO07G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01860.1.cds1NO07G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01860.1.cds2NO07G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01860.1.cds3NO07G01860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01860.1 ID=NO07G01860.1|Name=NO07G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=676bp
ACAGCGGTATATCTCTGCACATCCAATCATGTCACAAGTGCCATGGACCC
GGATACGCGAATTCAAAGAGGAGCAGGAACGGAAGAAGCGGCGGGAGTTT
GAAGCAGCCTTGGGTCGGGCGCAACTCCAGGTGCCAGGGCAACAGGACCA
GCAGCAAAGCCAGGGACCAGCAACAGCACGAGCAAAACCTTTTCAAGAGC
GCTTTAAGGAGTCGTATTTCAAAGAGCGACTGATGTTTGGGGGAGTCGTG
GGCGCCGTGACGGGCGCATTTTTTGGCGGACTGGACGCGGTGCAGGGCAT
CAAGAAGGGAGAGGCATTTGGTGTGATGCTCAACACGTTGCCCTCCAAGG
CCAAGTTTTCTGGCGAACACATAGGCAGTGCTGCCCTCGTATTTTCCATA
TTCTATTCCTCCTACCAAGGCATAAAATACATCAGTAAGGTTGCACGAGA
CGAGGATGATTGGGGAAATCCGGCAACAGCTGCCATCACGACCGTCGCCC
CGTTGCTTCTTTCTGCCACATTTCGTCGCAACGTGCCTTATGCGGTCCTC
TTGATAGGCATGGATGTGTTCAGCGAAGCGACTGCATCCACGCCCTCCTC
CACCACCTCTACTACTAGTTAAGGGAGAGTGAATCTCAAGTGTAAGTATA
TTTTCCGCGAACACGAACACAAGAAG
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protein sequence of NO07G01860.1

>NO07G01860.1-protein ID=NO07G01860.1-protein|Name=NO07G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSQVPWTRIREFKEEQERKKRREFEAALGRAQLQVPGQQDQQQSQGPATA
RAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQGIKKGEAFGVM
LNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPAT
AAITTVAPLLLSATFRRNVPYAVLLIGMDVFSEATASTPSSTTSTTS*
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mRNA from alignment at chr7:551458..552586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01860.1 ID=NO07G01860.1|Name=NO07G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1129bp|location=Sequence derived from alignment at chr7:551458..552586- (Nannochloropsis oceanica)
ACAGCGGTATATCTCTGCACATCCAATCATGTCACAAGTGCCATGGACCC
GGATACGCGAATTCAAAGAGGAGCAGGAACGGAAGAAGCGGCGGGAGTTT
GAAGCAGCCTTGGGTCGGGCGCAACTCCAGGTGCCAGGGCAACAGGACCA
GCAGCAAAGCCAGGGACCAGCAACAGCACGAGCAAAACCTTTTCAAGAGC
GCTTTAAGGAGTCGTATTTCAAAGAGCGACTGATGTTTGGGGGAGTCGTG
GGCGCCGTGACGGGCGCATTTTTTGGCGGACGTAAGTGCTTATGTTTGTG
GTAGACAGATGGGGACGTTGGTGCTTTTGCGTGACGACTTGGAGAAAGAA
AAAGGCATGTCGCAGGAGTTCCCTTGACTCTCGAGGCTTCCGGTCGGGGT
TTGGTTCGTCACGGATAACGTTCCTCATCCTCGCACACGAGCTTTCAGGA
GAGGTTGGTAGAAGAGGACGTCAACCCCGGGGACAGACGAGCAACAAATT
TGATCGCCCAGCGATTTCTCGGGGGTCAATGATCTTACTCATTTCCCTCT
TTCTTCTTCCATAATCATAGTGGACGCGGTGCAGGGCATCAAGAAGGGAG
AGGCATTTGGTGTGATGCTCAACACGTTGCCCTCCAAGGCCAAGTTTTCT
GGCGAACACATAGGCAGTGCTGCCCTCGTATTTTCCATGTACGTGCATGC
GCGGGTGATTGTCGTCCTCCCGAATTTGTTGTGCGACTGTTCCTTGCATC
ACGGGTTTTGGGATTAATGCACGCTTTATCCCGTCTTACTCCTCATATCA
TATTTCCTCGGCTTTTTCCTCCCCCCAATTTTCTCCTCTCCTTTTTCCTC
AGATTCTATTCCTCCTACCAAGGCATAAAATACATCAGTAAGGTTGCACG
AGACGAGGATGATTGGGGAAATCCGGCAACAGCTGCCATCACGACCGTCG
CCCCGTTGCTTCTTTCTGCCACATTTCGTCGCAACGTGCCTTATGCGGTC
CTCTTGATAGGCATGGATGTGTTCAGCGAAGCGACTGCATCCACGCCCTC
CTCCACCACCTCTACTACTAGTTAAGGGAGAGTGAATCTCAAGTGTAAGT
ATATTTTCCGCGAACACGAACACAAGAAG
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Coding sequence (CDS) from alignment at chr7:551458..552586-

>NO07G01860.1 ID=NO07G01860.1|Name=NO07G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr7:551458..552586- (Nannochloropsis oceanica)
ATGTCACAAGTGCCATGGACCCGGATACGCGAATTCAAAGAGGAGCAGGA
ACGGAAGAAGCGGCGGGAGTTTGAAGCAGCCTTGGGTCGGGCGCAACTCC
AGGTGCCAGGGCAACAGGACCAGCAGCAAAGCCAGGGACCAGCAACAGCA
CGAGCAAAACCTTTTCAAGAGCGCTTTAAGGAGTCGTATTTCAAAGAGCG
ACTGATGTTTGGGGGAGTCGTGGGCGCCGTGACGGGCGCATTTTTTGGCG
GACTGGACGCGGTGCAGGGCATCAAGAAGGGAGAGGCATTTGGTGTGATG
CTCAACACGTTGCCCTCCAAGGCCAAGTTTTCTGGCGAACACATAGGCAG
TGCTGCCCTCGTATTTTCCATATTCTATTCCTCCTACCAAGGCATAAAAT
ACATCAGTAAGGTTGCACGAGACGAGGATGATTGGGGAAATCCGGCAACA
GCTGCCATCACGACCGTCGCCCCGTTGCTTCTTTCTGCCACATTTCGTCG
CAACGTGCCTTATGCGGTCCTCTTGATAGGCATGGATGTGTTCAGCGAAG
CGACTGCATCCACGCCCTCCTCCACCACCTCTACTACTAGTTAA
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Synonyms
Publications