NO07G01850.1, NO07G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01850.1
Unique NameNO07G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1579
Alignment locationchr7:549579..551430 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:549579..551430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01850.1 vs.
Match: EWM27159.1 (clavaminate synthase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 563.1 bits (1450), Expect = 6.400e-157
Identity = 279/380 (73.42%), Postives = 312/380 (82.11%), Query Frame = 0 
Query:    1 MAITSICRLV------LISSSMVVALAADRSST-----SMDYFPADSPVVPIHIPEQKIFDGIEFPLVLGPNPKTKNTGARTKQETLKEWVQAATPEVVDALLLKHGAILFKDFQVDTPERFNNMVEEFGFDNFPYVGGAAVRRQLAPRVFTTNESPPSEKIPFHHEMAQVPSFPAKVFFQCDTPPETGGETPILPSWEVCARLEAKHPAFIRKLADGVRYVRVMPEEDDPSSAIGRGWKSTYATQDRAEVEVRLRSLNYTGEWLGDGSLRTISPVLSAVRQDVGEGRSGRKTFFNSVVAVFTGWNDSRNKGERAIQFADGSYLDPTLIAEAGSIMEELAVAFPWKRGDFVLIDNHTVMHSRRPFTGKRLVTASLAKAAR 370
            MA+   C++V      L+S+ + + LA    ST     S   FP D  VV I IPEQK+FDGIEFPLVLGPN K  N    T QE L +WV A+TP+++D LLLKHGAILFK F +D+P  FN++VE FGF+NFPYVGGAAVRRQLAPRVFTTNESPP+EKIPFHHEMAQVP+FP KVFFQCD P ETGGETP+LPSWE+C RLEA HP FIRKL  GVRY+RVMPEEDDPSSAIGRGWKSTYAT DR++V   L+SLNY+GEWL DGSLRTISPVL AVR D+GE RSGRKTFFNSVVAVFTGWNDSRNKGE AI+FADGSYLDP+LI  AG +MEELAVAFPW RGDF+LIDNHTVMHSRRPFTGKR+VTASLAKA R
Sbjct:   32 MALIPTCKVVHCQLLLLLSTILFLPLAVSFQSTDTLQSSQASFPEDGAVVSIRIPEQKVFDGIEFPLVLGPNKKM-NISEGTLQERLTKWVLASTPKLLDDLLLKHGAILFKGFHIDSPHHFNDIVETFGFENFPYVGGAAVRRQLAPRVFTTNESPPTEKIPFHHEMAQVPAFPDKVFFQCDMPSETGGETPVLPSWEICRRLEALHPEFIRKLEKGVRYIRVMPEEDDPSSAIGRGWKSTYATSDRSKVSNILKSLNYSGEWLPDGSLRTISPVLPAVRHDLGENRSGRKTFFNSVVAVFTGWNDSRNKGETAIEFADGSYLDPSLITVAGRLMEELAVAFPWCRGDFILIDNHTVMHSRRPFTGKRIVTASLAKALR 410
The following BLAST results are available for this feature:
BLAST of NO07G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27159.16.400e-15773.42clavaminate synthase-like protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01850NO07G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01850.1NO07G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01850.1.cds1NO07G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01850.1.cds2NO07G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01850.1 ID=NO07G01850.1|Name=NO07G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp
CCTTGCTCGTTGCTCCGAGTCGGAGAGTCTCAGTGCTTCCCCACGTTCCG
CTGGTCTTGAATGTCATCCATTCACGCCTCATCCACGGCATTGTAGACCA
CATACACAAGATACGTAGGACTCGCTCGCTGTCGTGAGACAACCGCAGAA
GACGCAGGGTTGCTTGGCAGCGTTCCATTTGGACTCTGCAAGGGGCCTCG
GTACACACTCGGTAGGTAATATGGCCATCACGTCGATATGCCGTCTGGTC
CTGATCTCCAGTTCAATGGTAGTCGCGCTGGCAGCCGACCGGTCTTCAAC
CTCCATGGACTACTTCCCTGCGGACAGCCCCGTGGTACCCATCCACATTC
CCGAGCAAAAAATCTTTGATGGCATTGAGTTCCCGCTCGTGCTGGGGCCT
AACCCTAAGACCAAAAATACCGGCGCAAGGACTAAACAAGAGACGCTGAA
AGAGTGGGTACAAGCAGCCACACCCGAAGTGGTGGATGCGCTTCTGCTCA
AGCATGGCGCCATCCTCTTCAAGGACTTTCAAGTCGACACCCCCGAGCGC
TTCAACAACATGGTAGAAGAATTCGGCTTCGACAATTTTCCCTACGTCGG
TGGAGCTGCCGTCCGCCGCCAGCTTGCCCCTCGTGTCTTCACAACAAACG
AGTCCCCGCCCTCGGAAAAAATCCCCTTCCACCACGAAATGGCCCAGGTG
CCCTCGTTTCCCGCCAAGGTCTTCTTTCAATGCGACACCCCTCCGGAAAC
AGGGGGCGAGACCCCCATTCTGCCTTCATGGGAGGTCTGCGCAAGACTCG
AAGCGAAGCACCCGGCATTCATCCGGAAGTTAGCAGACGGGGTGAGGTAC
GTCCGTGTTATGCCCGAGGAAGACGATCCTTCGTCCGCGATTGGCCGAGG
GTGGAAATCAACGTATGCCACGCAGGATCGAGCGGAGGTAGAAGTCCGAT
TGCGCAGTTTAAACTACACCGGGGAGTGGTTGGGGGATGGGAGCCTGAGG
ACGATCTCGCCTGTCTTGTCAGCAGTGAGGCAAGACGTGGGAGAGGGGAG
GTCGGGGAGGAAAACGTTCTTTAACTCGGTAGTTGCGGTGTTTACAGGGT
GGAATGACTCGAGAAATAAAGGGGAGAGGGCCATTCAGTTCGCGGACGGG
AGTTACTTGGACCCGACTTTGATCGCAGAGGCTGGTTCAATAATGGAGGA
GCTGGCGGTGGCATTCCCGTGGAAGAGGGGGGATTTCGTCTTGATTGATA
ACCACACGGTCATGCATTCAAGGAGGCCCTTCACGGGGAAGAGACTGGTG
ACGGCAAGTCTGGCCAAGGCAGCGCGTGTGATAAGGTCTGCTGTATCGGT
AGAAGGGGGTGGGGAGCTGTGAGGTGTATATGGTTGACGGACAAGGACAT
GTTTGGTAGGACTGCAACATGAATCGGAGGGAAACGAAAACGAATCCAAG
AGAGAGCTTGATCGCCAGGCATCCATTAAGGAGAAATTGAACCATACCTA
AGGAAAGAAAACAAAAAATCCATGAAGAAGAAACACAACAAAGGCAGAAG
AGAAAAGGAAGAGCACATTCAGATCAAGA
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protein sequence of NO07G01850.1

>NO07G01850.1-protein ID=NO07G01850.1-protein|Name=NO07G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MAITSICRLVLISSSMVVALAADRSSTSMDYFPADSPVVPIHIPEQKIFD
GIEFPLVLGPNPKTKNTGARTKQETLKEWVQAATPEVVDALLLKHGAILF
KDFQVDTPERFNNMVEEFGFDNFPYVGGAAVRRQLAPRVFTTNESPPSEK
IPFHHEMAQVPSFPAKVFFQCDTPPETGGETPILPSWEVCARLEAKHPAF
IRKLADGVRYVRVMPEEDDPSSAIGRGWKSTYATQDRAEVEVRLRSLNYT
GEWLGDGSLRTISPVLSAVRQDVGEGRSGRKTFFNSVVAVFTGWNDSRNK
GERAIQFADGSYLDPTLIAEAGSIMEELAVAFPWKRGDFVLIDNHTVMHS
RRPFTGKRLVTASLAKAARVIRSAVSVEGGGEL*
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mRNA from alignment at chr7:549579..551430+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01850.1 ID=NO07G01850.1|Name=NO07G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at chr7:549579..551430+ (Nannochloropsis oceanica)
CCTTGCTCGTTGCTCCGAGTCGGAGAGTCTCAGTGCTTCCCCACGTTCCG
CTGGTCTTGAATGTCATCCATTCACGCCTCATCCACGGCATTGTAGACCA
CATACACAAGATACGTAGGACTCGCTCGCTGTCGTGAGACAACCGCAGAA
GACGCAGGGTTGCTTGGCAGCGTTCCATTTGGACTCTGCAAGGGGCCTCG
GTACACACTCGGTAGGTAATATGGCCATCACGTCGATATGCCGTCTGGTC
CTGATCTCCAGTTCAATGGTAGTCGCGCTGGCAGCCGACCGGTCTTCAAC
CTCCATGGTAAGTGCGAATGCACATTTGTCGATGCTCTCAGGTTCTGGTG
TAGAGGCTCCGTAATCACGAGATATTTAGCTCGTTCGTCCCATCTCGATT
GAGCCTTCGACCCGATTCCGGTTGGTTTAGGACACACATGCACACACATG
CACGCATACGCTCGCATGCTTTTGCTTCGTTATTTATGGTGCCAGTATTT
TCCAGAATTTTCTCATCGTCCCTATCCCAAGCACCCAGTCACACCCCTCT
CCCCAAACCCTTTTCCCCAACATCAACCAGGACTACTTCCCTGCGGACAG
CCCCGTGGTACCCATCCACATTCCCGAGCAAAAAATCTTTGATGGCATTG
AGTTCCCGCTCGTGCTGGGGCCTAACCCTAAGACCAAAAATACCGGCGCA
AGGACTAAACAAGAGACGCTGAAAGAGTGGGTACAAGCAGCCACACCCGA
AGTGGTGGATGCGCTTCTGCTCAAGCATGGCGCCATCCTCTTCAAGGACT
TTCAAGTCGACACCCCCGAGCGCTTCAACAACATGGTAGAAGAATTCGGC
TTCGACAATTTTCCCTACGTCGGTGGAGCTGCCGTCCGCCGCCAGCTTGC
CCCTCGTGTCTTCACAACAAACGAGTCCCCGCCCTCGGAAAAAATCCCCT
TCCACCACGAAATGGCCCAGGTGCCCTCGTTTCCCGCCAAGGTCTTCTTT
CAATGCGACACCCCTCCGGAAACAGGGGGCGAGACCCCCATTCTGCCTTC
ATGGGAGGTCTGCGCAAGACTCGAAGCGAAGCACCCGGCATTCATCCGGA
AGTTAGCAGACGGGGTGAGGTACGTCCGTGTTATGCCCGAGGAAGACGAT
CCTTCGTCCGCGATTGGCCGAGGGTGGAAATCAACGTATGCCACGCAGGA
TCGAGCGGAGGTAGAAGTCCGATTGCGCAGTTTAAACTACACCGGGGAGT
GGTTGGGGGATGGGAGCCTGAGGACGATCTCGCCTGTCTTGTCAGCAGTG
AGGCAAGACGTGGGAGAGGGGAGGTCGGGGAGGAAAACGTTCTTTAACTC
GGTAGTTGCGGTGTTTACAGGGTGGAATGACTCGAGAAATAAAGGGGAGA
GGGCCATTCAGTTCGCGGACGGGAGTTACTTGGACCCGACTTTGATCGCA
GAGGCTGGTTCAATAATGGAGGAGCTGGCGGTGGCATTCCCGTGGAAGAG
GGGGGATTTCGTCTTGATTGATAACCACACGGTCATGCATTCAAGGAGGC
CCTTCACGGGGAAGAGACTGGTGACGGCAAGTCTGGCCAAGGCAGCGCGT
GTGATAAGGTCTGCTGTATCGGTAGAAGGGGGTGGGGAGCTGTGAGGTGT
ATATGGTTGACGGACAAGGACATGTTTGGTAGGACTGCAACATGAATCGG
AGGGAAACGAAAACGAATCCAAGAGAGAGCTTGATCGCCAGGCATCCATT
AAGGAGAAATTGAACCATACCTAAGGAAAGAAAACAAAAAATCCATGAAG
AAGAAACACAACAAAGGCAGAAGAGAAAAGGAAGAGCACATTCAGATCAA
GA
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Coding sequence (CDS) from alignment at chr7:549579..551430+

>NO07G01850.1 ID=NO07G01850.1|Name=NO07G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr7:549579..551430+ (Nannochloropsis oceanica)
ATGGCCATCACGTCGATATGCCGTCTGGTCCTGATCTCCAGTTCAATGGT
AGTCGCGCTGGCAGCCGACCGGTCTTCAACCTCCATGGACTACTTCCCTG
CGGACAGCCCCGTGGTACCCATCCACATTCCCGAGCAAAAAATCTTTGAT
GGCATTGAGTTCCCGCTCGTGCTGGGGCCTAACCCTAAGACCAAAAATAC
CGGCGCAAGGACTAAACAAGAGACGCTGAAAGAGTGGGTACAAGCAGCCA
CACCCGAAGTGGTGGATGCGCTTCTGCTCAAGCATGGCGCCATCCTCTTC
AAGGACTTTCAAGTCGACACCCCCGAGCGCTTCAACAACATGGTAGAAGA
ATTCGGCTTCGACAATTTTCCCTACGTCGGTGGAGCTGCCGTCCGCCGCC
AGCTTGCCCCTCGTGTCTTCACAACAAACGAGTCCCCGCCCTCGGAAAAA
ATCCCCTTCCACCACGAAATGGCCCAGGTGCCCTCGTTTCCCGCCAAGGT
CTTCTTTCAATGCGACACCCCTCCGGAAACAGGGGGCGAGACCCCCATTC
TGCCTTCATGGGAGGTCTGCGCAAGACTCGAAGCGAAGCACCCGGCATTC
ATCCGGAAGTTAGCAGACGGGGTGAGGTACGTCCGTGTTATGCCCGAGGA
AGACGATCCTTCGTCCGCGATTGGCCGAGGGTGGAAATCAACGTATGCCA
CGCAGGATCGAGCGGAGGTAGAAGTCCGATTGCGCAGTTTAAACTACACC
GGGGAGTGGTTGGGGGATGGGAGCCTGAGGACGATCTCGCCTGTCTTGTC
AGCAGTGAGGCAAGACGTGGGAGAGGGGAGGTCGGGGAGGAAAACGTTCT
TTAACTCGGTAGTTGCGGTGTTTACAGGGTGGAATGACTCGAGAAATAAA
GGGGAGAGGGCCATTCAGTTCGCGGACGGGAGTTACTTGGACCCGACTTT
GATCGCAGAGGCTGGTTCAATAATGGAGGAGCTGGCGGTGGCATTCCCGT
GGAAGAGGGGGGATTTCGTCTTGATTGATAACCACACGGTCATGCATTCA
AGGAGGCCCTTCACGGGGAAGAGACTGGTGACGGCAAGTCTGGCCAAGGC
AGCGCGTGTGATAAGGTCTGCTGTATCGGTAGAAGGGGGTGGGGAGCTGT
GA
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Synonyms
Publications