NO07G01830.1, NO07G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01830.1
Unique NameNO07G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2173
Alignment locationchr7:544143..546315 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:544143..546315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01830.1 vs.
Match: XP_005856396.1 (hnrnp arginine n-methyltransferase, partial [Nannochloropsis gaditana CCMP526]; EKU19953.1 hnrnp arginine n-methyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 635.6 bits (1638), Expect = 1.600e-178
Identity = 341/569 (59.93%), Postives = 413/569 (72.58%), Query Frame = 0 
Query:   31 GRGNDDSSCSSDSS-GSCNDRMDAEEEWGDWEDEGPQEMPTQCLLSDAIKSSPEDALAADHQQGLDLLGLLGTHGLGLYGAMKLINFIRTLVLKHGVSAEQVVAQVQDVDSLRAALQGDEMLQPVLEDDPLLFALGELLEAHGLDLLLQNEEEGESTGEEERDAENGAGTQAMAAGDQKVSDRHLSSQGQRGLVQENHELREELGEVRARLKRLSELMAAVDEDVKIRTKPERQDNDTYYFKSYSHYCIHETMLKDTVRTQSYREAIHKAGLEGKVVLDVGSGSGVLSMFAAKAGAAQVVGVDCSRIMEQARAIVKLNGLEEKVVLVQGKMEEVNLPVDKVDVIVSEWMGYCLLYESMLPSVLAARDKYLRPGGLLLPSRCTMLVQGVGDFEGKLGWWDNVYGLDMSPLRESVLAEPGVEVADPQAILTDAFVFKDFDLYNVQVKDLDFEADFSLIVGAASGATVVGSRRLRGLVVSFDTYFLGLSGGQSVVFSTRPNEKDTHWHQTLFWLTGAPEEELGGGDMVKGKLCFSRNAINPRDYDVAISWEVLRKEGEVVVGQGRQSYTLGS 599
            G  ND SS +S S   S N     +EEW DW DEGP E+PT+CLLSD  + SPE ALAAD   GLD  GLL +H L LYGAMKLINFIRTL  K G+SAE +VA+V D DSL AAL+ +  LQP++++DPLL+ LG+LLEA G+D  + + E    TG+E +D   G  T      D               L+QEN  LR +L E  ARL+RLS LMAAVD+DV++ + P+  DNDTYYF+SY+H+ IHETMLKD VRT +YR+AI +AG+ GKVVLDVG+GSGVLSMFAAKAGA  V GVDCS I++ ARAIV+LNG+  KV L+QGK+EE+ LPV +VDVIVSEWMGYCLLYESML SVL ARDKYLRPGGL+LPSRC+M++QGV D E +L WW +VYGLDMSPLR +V++EP VE    +AILTDAF+FKDFDLY V+ +DLDFEADF L V A+     +    L GLVVSFDT+F  L G Q V FSTRP   DTHWHQTLFWL+GAP E L  GD +KG + F R + N R+YDV ISWEV R  G +++G G+QS+TLGS
Sbjct:   13 GHENDGSSIASVSDDSSINVCARGDEEWNDWVDEGPDEVPTRCLLSDTEEISPEAALAADRVMGLDFFGLLNSHQLDLYGAMKLINFIRTLA-KRGISAEDIVARVTDADSLIAALKDEIYLQPIIQEDPLLYGLGKLLEARGMDDAVLSREGDGRTGDESKDKACGNITMEAEGPDSN----------PEFLMQENESLRTDLREAHARLRRLSMLMAAVDDDVRVSSTPQAPDNDTYYFRSYNHHAIHETMLKDRVRTHAYRDAIFQAGMTGKVVLDVGAGSGVLSMFAAKAGADLVFGVDCSEIVKLARAIVQLNGMGHKVKLIQGKIEEIRLPVAEVDVIVSEWMGYCLLYESMLLSVLTARDKYLRPGGLMLPSRCSMVIQGVSDVERRLSWWSDVYGLDMSPLRAAVMSEPAVESVYQEAILTDAFIFKDFDLYTVKARDLDFEADFVLDVQASQ----IEPLPLCGLVVSFDTFFENLLGQQVVSFSTRPESNDTHWHQTLFWLSGAPNEVLTEGDTIKGNIGFRRTSTNHREYDVHISWEVRRNMGSLLLGNGQQSFTLGS 566
The following BLAST results are available for this feature:
BLAST of NO07G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856396.11.600e-17859.93hnrnp arginine n-methyltransferase, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01830NO07G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01830.1NO07G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01830.1.cds1NO07G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01830.1 ID=NO07G01830.1|Name=NO07G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp
TTTTTTTCTCCTTAACATCGACGATGGCTCTGCATTGCACTTGAACTTAC
CAACGGCTGCCCCACCAACATCCATCAATCACTACTAGTAGTAGGCTGCC
GACCCCCACCCCCCTTCTCTTGGTTTAAAAGATCCCACCCCACCTAAGCA
TACTCGTCGTAGTCTAGGTCCTCAGTTGCCTCTCGTGACGGCTGTCTGTG
AGAACCTCGGTAAATTTCACTCCGATATCTCAGTCTCAACTCATGGCCAC
CATCCCTTGCTCAAACACCATTTCCTCCTCAAACAAACAGAAAAATATGA
ACAATAAGAAAGGCGACGTTAACAGCAGCATCGGACGCGGAAATGACGAC
AGCTCATGTAGTAGCGACAGCAGTGGCAGCTGCAACGATCGCATGGACGC
CGAGGAAGAATGGGGCGACTGGGAGGACGAAGGGCCTCAGGAGATGCCGA
CCCAATGCCTCCTTTCGGACGCCATTAAGTCCTCACCGGAGGATGCTTTG
GCCGCGGACCATCAGCAGGGGCTAGATTTACTTGGATTGCTTGGTACCCA
CGGGCTGGGCTTGTACGGAGCGATGAAACTTATCAATTTTATCCGCACCC
TTGTGCTAAAGCATGGCGTGTCGGCTGAGCAAGTTGTTGCGCAGGTGCAG
GATGTCGATAGCTTACGGGCCGCGTTGCAAGGAGACGAGATGCTACAGCC
CGTTTTGGAGGACGATCCACTCCTTTTTGCGCTAGGGGAACTGTTGGAGG
CACACGGGCTCGACTTGCTGCTGCAGAATGAGGAGGAAGGAGAGAGCACA
GGAGAAGAGGAGAGGGATGCGGAGAACGGGGCAGGGACACAGGCGATGGC
AGCAGGTGATCAGAAGGTGTCTGACCGGCATTTGTCTTCGCAGGGGCAAC
GTGGACTTGTCCAGGAGAACCACGAACTACGCGAAGAATTGGGAGAAGTA
CGAGCGCGGTTGAAGCGCTTGAGTGAGCTGATGGCGGCAGTGGACGAGGA
CGTCAAGATCCGCACCAAACCGGAGCGCCAAGACAATGACACATACTATT
TTAAGTCTTACAGCCACTATTGCATTCACGAGACCATGCTAAAGGACACC
GTGCGGACGCAGTCGTATCGGGAAGCGATTCACAAAGCGGGGTTGGAGGG
GAAGGTGGTTTTAGATGTTGGGTCAGGAAGTGGTGTGTTGTCCATGTTTG
CGGCCAAAGCTGGCGCGGCTCAGGTAGTGGGTGTGGACTGTAGTAGAATT
ATGGAGCAGGCAAGAGCTATTGTGAAATTAAATGGGTTGGAGGAGAAGGT
AGTGTTGGTGCAGGGGAAGATGGAGGAGGTAAACTTGCCTGTTGATAAGG
TCGATGTGATTGTGTCTGAGTGGATGGGGTATTGTTTGCTTTATGAATCG
ATGCTCCCTTCTGTATTAGCAGCAAGGGATAAGTACCTACGTCCCGGCGG
ACTGTTGTTGCCCAGTCGGTGCACAATGCTCGTCCAAGGAGTAGGGGACT
TTGAAGGTAAATTAGGGTGGTGGGACAATGTGTATGGATTAGACATGAGT
CCTCTCAGGGAGTCAGTGCTAGCAGAACCGGGGGTAGAAGTGGCAGATCC
TCAAGCGATTTTGACGGATGCTTTTGTTTTTAAGGACTTTGATCTTTACA
ACGTGCAAGTGAAAGATTTGGATTTCGAGGCTGACTTTTCGTTGATTGTC
GGGGCAGCATCAGGTGCAACAGTTGTAGGATCGAGGCGTTTAAGAGGTCT
AGTGGTCTCTTTCGATACGTATTTTTTGGGCCTGTCAGGGGGGCAGAGTG
TTGTTTTTTCGACGAGGCCAAACGAGAAAGATACGCATTGGCACCAGACT
CTTTTTTGGCTGACAGGGGCGCCGGAGGAGGAGCTTGGGGGGGGAGATAT
GGTGAAGGGGAAACTTTGCTTTTCTCGGAATGCGATAAATCCGCGCGATT
ATGACGTGGCTATTTCGTGGGAGGTCTTGAGGAAAGAGGGGGAAGTTGTG
GTGGGGCAGGGAAGGCAGAGCTATACTTTGGGGAGCTGAAATATGAGAGG
AAGAGCGAAAAGTCAATACTCGTTGGAAACGACAAAACGGAAACAAAGCA
CCAAGAGTGTTATTACCAGCACAAAGCAAAAATAAAGGTCAGGAAAGGAA
ATAATTGACAAACAGCGACATTA
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protein sequence of NO07G01830.1

>NO07G01830.1-protein ID=NO07G01830.1-protein|Name=NO07G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MATIPCSNTISSSNKQKNMNNKKGDVNSSIGRGNDDSSCSSDSSGSCNDR
MDAEEEWGDWEDEGPQEMPTQCLLSDAIKSSPEDALAADHQQGLDLLGLL
GTHGLGLYGAMKLINFIRTLVLKHGVSAEQVVAQVQDVDSLRAALQGDEM
LQPVLEDDPLLFALGELLEAHGLDLLLQNEEEGESTGEEERDAENGAGTQ
AMAAGDQKVSDRHLSSQGQRGLVQENHELREELGEVRARLKRLSELMAAV
DEDVKIRTKPERQDNDTYYFKSYSHYCIHETMLKDTVRTQSYREAIHKAG
LEGKVVLDVGSGSGVLSMFAAKAGAAQVVGVDCSRIMEQARAIVKLNGLE
EKVVLVQGKMEEVNLPVDKVDVIVSEWMGYCLLYESMLPSVLAARDKYLR
PGGLLLPSRCTMLVQGVGDFEGKLGWWDNVYGLDMSPLRESVLAEPGVEV
ADPQAILTDAFVFKDFDLYNVQVKDLDFEADFSLIVGAASGATVVGSRRL
RGLVVSFDTYFLGLSGGQSVVFSTRPNEKDTHWHQTLFWLTGAPEEELGG
GDMVKGKLCFSRNAINPRDYDVAISWEVLRKEGEVVVGQGRQSYTLGS*
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mRNA from alignment at chr7:544143..546315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01830.1 ID=NO07G01830.1|Name=NO07G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at chr7:544143..546315+ (Nannochloropsis oceanica)
TTTTTTTCTCCTTAACATCGACGATGGCTCTGCATTGCACTTGAACTTAC
CAACGGCTGCCCCACCAACATCCATCAATCACTACTAGTAGTAGGCTGCC
GACCCCCACCCCCCTTCTCTTGGTTTAAAAGATCCCACCCCACCTAAGCA
TACTCGTCGTAGTCTAGGTCCTCAGTTGCCTCTCGTGACGGCTGTCTGTG
AGAACCTCGGTAAATTTCACTCCGATATCTCAGTCTCAACTCATGGCCAC
CATCCCTTGCTCAAACACCATTTCCTCCTCAAACAAACAGAAAAATATGA
ACAATAAGAAAGGCGACGTTAACAGCAGCATCGGACGCGGAAATGACGAC
AGCTCATGTAGTAGCGACAGCAGTGGCAGCTGCAACGATCGCATGGACGC
CGAGGAAGAATGGGGCGACTGGGAGGACGAAGGGCCTCAGGAGATGCCGA
CCCAATGCCTCCTTTCGGACGCCATTAAGTCCTCACCGGAGGATGCTTTG
GCCGCGGACCATCAGCAGGGGCTAGATTTACTTGGATTGCTTGGTACCCA
CGGGCTGGGCTTGTACGGAGCGATGAAACTTATCAATTTTATCCGCACCC
TTGTGCTAAAGCATGGCGTGTCGGCTGAGCAAGTTGTTGCGCAGGTGCAG
GATGTCGATAGCTTACGGGCCGCGTTGCAAGGAGACGAGATGCTACAGCC
CGTTTTGGAGGACGATCCACTCCTTTTTGCGCTAGGGGAACTGTTGGAGG
CACACGGGCTCGACTTGCTGCTGCAGAATGAGGAGGAAGGAGAGAGCACA
GGAGAAGAGGAGAGGGATGCGGAGAACGGGGCAGGGACACAGGCGATGGC
AGCAGGTGATCAGAAGGTGTCTGACCGGCATTTGTCTTCGCAGGGGCAAC
GTGGACTTGTCCAGGAGAACCACGAACTACGCGAAGAATTGGGAGAAGTA
CGAGCGCGGTTGAAGCGCTTGAGTGAGCTGATGGCGGCAGTGGACGAGGA
CGTCAAGATCCGCACCAAACCGGAGCGCCAAGACAATGACACATACTATT
TTAAGTCTTACAGCCACTATTGCATTCACGAGACCATGCTAAAGGACACC
GTGCGGACGCAGTCGTATCGGGAAGCGATTCACAAAGCGGGGTTGGAGGG
GAAGGTGGTTTTAGATGTTGGGTCAGGAAGTGGTGTGTTGTCCATGTTTG
CGGCCAAAGCTGGCGCGGCTCAGGTAGTGGGTGTGGACTGTAGTAGAATT
ATGGAGCAGGCAAGAGCTATTGTGAAATTAAATGGGTTGGAGGAGAAGGT
AGTGTTGGTGCAGGGGAAGATGGAGGAGGTAAACTTGCCTGTTGATAAGG
TCGATGTGATTGTGTCTGAGTGGATGGGGTATTGTTTGCTTTATGAATCG
ATGCTCCCTTCTGTATTAGCAGCAAGGGATAAGTACCTACGTCCCGGCGG
ACTGTTGTTGCCCAGTCGGTGCACAATGCTCGTCCAAGGAGTAGGGGACT
TTGAAGGTAAATTAGGGTGGTGGGACAATGTGTATGGATTAGACATGAGT
CCTCTCAGGGAGTCAGTGCTAGCAGAACCGGGGGTAGAAGTGGCAGATCC
TCAAGCGATTTTGACGGATGCTTTTGTTTTTAAGGACTTTGATCTTTACA
ACGTGCAAGTGAAAGATTTGGATTTCGAGGCTGACTTTTCGTTGATTGTC
GGGGCAGCATCAGGTGCAACAGTTGTAGGATCGAGGCGTTTAAGAGGTCT
AGTGGTCTCTTTCGATACGTATTTTTTGGGCCTGTCAGGGGGGCAGAGTG
TTGTTTTTTCGACGAGGCCAAACGAGAAAGATACGCATTGGCACCAGACT
CTTTTTTGGCTGACAGGGGCGCCGGAGGAGGAGCTTGGGGGGGGAGATAT
GGTGAAGGGGAAACTTTGCTTTTCTCGGAATGCGATAAATCCGCGCGATT
ATGACGTGGCTATTTCGTGGGAGGTCTTGAGGAAAGAGGGGGAAGTTGTG
GTGGGGCAGGGAAGGCAGAGCTATACTTTGGGGAGCTGAAATATGAGAGG
AAGAGCGAAAAGTCAATACTCGTTGGAAACGACAAAACGGAAACAAAGCA
CCAAGAGTGTTATTACCAGCACAAAGCAAAAATAAAGGTCAGGAAAGGAA
ATAATTGACAAACAGCGACATTA
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Coding sequence (CDS) from alignment at chr7:544143..546315+

>NO07G01830.1 ID=NO07G01830.1|Name=NO07G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at chr7:544143..546315+ (Nannochloropsis oceanica)
ATGGCCACCATCCCTTGCTCAAACACCATTTCCTCCTCAAACAAACAGAA
AAATATGAACAATAAGAAAGGCGACGTTAACAGCAGCATCGGACGCGGAA
ATGACGACAGCTCATGTAGTAGCGACAGCAGTGGCAGCTGCAACGATCGC
ATGGACGCCGAGGAAGAATGGGGCGACTGGGAGGACGAAGGGCCTCAGGA
GATGCCGACCCAATGCCTCCTTTCGGACGCCATTAAGTCCTCACCGGAGG
ATGCTTTGGCCGCGGACCATCAGCAGGGGCTAGATTTACTTGGATTGCTT
GGTACCCACGGGCTGGGCTTGTACGGAGCGATGAAACTTATCAATTTTAT
CCGCACCCTTGTGCTAAAGCATGGCGTGTCGGCTGAGCAAGTTGTTGCGC
AGGTGCAGGATGTCGATAGCTTACGGGCCGCGTTGCAAGGAGACGAGATG
CTACAGCCCGTTTTGGAGGACGATCCACTCCTTTTTGCGCTAGGGGAACT
GTTGGAGGCACACGGGCTCGACTTGCTGCTGCAGAATGAGGAGGAAGGAG
AGAGCACAGGAGAAGAGGAGAGGGATGCGGAGAACGGGGCAGGGACACAG
GCGATGGCAGCAGGTGATCAGAAGGTGTCTGACCGGCATTTGTCTTCGCA
GGGGCAACGTGGACTTGTCCAGGAGAACCACGAACTACGCGAAGAATTGG
GAGAAGTACGAGCGCGGTTGAAGCGCTTGAGTGAGCTGATGGCGGCAGTG
GACGAGGACGTCAAGATCCGCACCAAACCGGAGCGCCAAGACAATGACAC
ATACTATTTTAAGTCTTACAGCCACTATTGCATTCACGAGACCATGCTAA
AGGACACCGTGCGGACGCAGTCGTATCGGGAAGCGATTCACAAAGCGGGG
TTGGAGGGGAAGGTGGTTTTAGATGTTGGGTCAGGAAGTGGTGTGTTGTC
CATGTTTGCGGCCAAAGCTGGCGCGGCTCAGGTAGTGGGTGTGGACTGTA
GTAGAATTATGGAGCAGGCAAGAGCTATTGTGAAATTAAATGGGTTGGAG
GAGAAGGTAGTGTTGGTGCAGGGGAAGATGGAGGAGGTAAACTTGCCTGT
TGATAAGGTCGATGTGATTGTGTCTGAGTGGATGGGGTATTGTTTGCTTT
ATGAATCGATGCTCCCTTCTGTATTAGCAGCAAGGGATAAGTACCTACGT
CCCGGCGGACTGTTGTTGCCCAGTCGGTGCACAATGCTCGTCCAAGGAGT
AGGGGACTTTGAAGGTAAATTAGGGTGGTGGGACAATGTGTATGGATTAG
ACATGAGTCCTCTCAGGGAGTCAGTGCTAGCAGAACCGGGGGTAGAAGTG
GCAGATCCTCAAGCGATTTTGACGGATGCTTTTGTTTTTAAGGACTTTGA
TCTTTACAACGTGCAAGTGAAAGATTTGGATTTCGAGGCTGACTTTTCGT
TGATTGTCGGGGCAGCATCAGGTGCAACAGTTGTAGGATCGAGGCGTTTA
AGAGGTCTAGTGGTCTCTTTCGATACGTATTTTTTGGGCCTGTCAGGGGG
GCAGAGTGTTGTTTTTTCGACGAGGCCAAACGAGAAAGATACGCATTGGC
ACCAGACTCTTTTTTGGCTGACAGGGGCGCCGGAGGAGGAGCTTGGGGGG
GGAGATATGGTGAAGGGGAAACTTTGCTTTTCTCGGAATGCGATAAATCC
GCGCGATTATGACGTGGCTATTTCGTGGGAGGTCTTGAGGAAAGAGGGGG
AAGTTGTGGTGGGGCAGGGAAGGCAGAGCTATACTTTGGGGAGCTGA
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Synonyms
Publications