NO07G01800.1, NO07G01800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01800.1
Unique NameNO07G01800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2370
Alignment locationchr7:538218..540669 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:538218..540669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01800.1 vs.
Match: EWM27156.1 (always early protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 1.200e-21
Identity = 141/525 (26.86%), Postives = 233/525 (44.38%), Query Frame = 0
Query:  143 LLHSLSMPALRRFAMAEFFYSTVDRAYFNQNTFQESLDAVGLSHVQKLTRTEWNRVRAFIGRRRRMSPALFTQERQRLREYRQVVRDIQQGRIVEPPPEFTFEVPTPLVVGQAVTAYHEKAKLLACGHILTCDYERGQYRVQFERPELSSLICQDSDIASNGASSLL--LIGEPSRKQRLQDNDISIHASISGFHHLPSPINLSSL----LLHHRHSATLRTMEMEEQEEEGEERMENSENDMQQQVPKQQQQAQLMIFTLKMLDRKDILVAALQKLNQQGEAEVAAATTSAASPSRSSGDDKSISSNNSSSGSSGSNSG----GLLLYKTGSQSRVDLSG---FEFTSTFKQKYARAIDALQHTNVLLSSALEGLQKLTQHQRQVVADKQSTEGEMYCLQLYNGMLVSRVVRETVEGARAEGQKACKRHIAAKYGYLLSLSIGKYADNNYTNTAAAAAAAVSGKKQVTLEEGGLVQGVIEAGATLLMVIRRCAEERHKCLSRFNEGESEDEEDEEEEVEEEVEK 655
            L  SLS  ++RRFA+ EFFY+TVDR Y N N F + LD +GL H++K++RTEW+ VR F GRRRR+SP    QERQ+L ++R++ R  Q+  +     +   ++P  L VG  V AY  K   L  G ILT +Y+  +YR+QFE P L +++C D++++  G  S       +PS      D      A    F    +    SS       +   ++  ++++     ++G+  +                  QLMIFTL+ML RK+IL+  L+  ++Q    + + +   + P           +   S GSSG+N G      L +   + S   L     +  +S   Q+Y     A + +NV   SA     +L  H +             +  +L      +    + V GA  E   A   HI     Y          D         +++   GK++V     G    ++++   +L V++ CA++      +F++ +S D +     V  E+E+
Sbjct:   42 LAQSLST-SVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNH--FDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPS------DGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEV-----------------VQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLP----------MNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSA---FGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQT-VSY----------DETIEEIPRISSSRDIGKRKVL---SGQDHVLLKSAVAMLFVLKECADK------QFSQMQSYDRDKVMSFVALEMER 507          
The following BLAST results are available for this feature:
BLAST of NO07G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27156.11.200e-2126.86always early protein 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01800NO07G01800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01800.1NO07G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01800.1.cds1NO07G01800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01800.1.cds2NO07G01800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01800.1 ID=NO07G01800.1|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp
ATGGACCGCCTCGCGCACGACCCCCTTGAAGGAGGAAGAGGAGAAGGTAA
TGGGGAAGGGGGTTTAAATTCGCTCGTGGCTTTTGCATCTTTTGCGGCTC
GCAATGATGACTTGCCCTTGCCCACGCAGCAAAACCTCCCGCCTCCACTG
CCTCCTGTCGCCCGTATGGCTCCCTTGATTCCTCAACTGTCATGCCCGTC
GCGATCAAATAAAAAGAAAAGGGGACGCTCGACCTCGCCCATGAGTGGCA
AGCATGATGGTCGCCAGTTATCGAATCTCGAAAGTGGCGGTGGTGGGGGC
AGTGTGCTGAGGCCGCCGAAACACCTATATTGTGCTCCTCCTTCGTCCGG
GGGAAGGGAATCTACCACTTTTGACACTAGCAGCAGCAGCTGGGGCCTGA
CCAGCAACAATACCTCTCTTACAATGTTGCTACATTCGCTGTCCATGCCA
GCGCTGCGTCGCTTCGCAATGGCTGAATTCTTTTATTCAACGGTGGATCG
AGCTTATTTCAATCAAAATACATTTCAAGAGAGCTTGGACGCTGTAGGGC
TTAGCCACGTGCAGAAATTGACGCGCACAGAATGGAATAGGGTTAGAGCA
TTTATTGGAAGACGTCGGCGAATGAGCCCGGCGCTCTTTACGCAAGAGCG
GCAGAGATTGAGGGAGTATCGGCAGGTGGTGCGGGATATTCAGCAAGGGC
GAATTGTGGAGCCACCTCCGGAATTCACTTTCGAAGTGCCTACCCCCTTG
GTGGTGGGACAAGCGGTGACAGCCTACCATGAGAAAGCAAAGCTACTGGC
TTGTGGGCACATTCTCACTTGCGATTACGAAAGAGGCCAGTACCGCGTTC
AATTTGAGCGACCCGAGCTGAGCTCTCTAATTTGTCAGGACTCTGATATA
GCTTCTAACGGGGCATCCTCTCTTTTGTTGATTGGCGAGCCCTCCCGAAA
ACAACGGCTCCAAGATAACGATATTAGTATTCATGCTAGTATTTCTGGGT
TTCATCACTTACCTTCACCCATTAATTTGTCCTCGCTGCTGCTTCATCAT
CGTCACTCCGCTACTTTGAGAACTATGGAGATGGAGGAGCAGGAGGAGGA
AGGAGAGGAGAGGATGGAAAACAGCGAGAACGATATGCAGCAGCAGGTAC
CAAAACAGCAACAACAAGCGCAACTAATGATTTTTACCCTCAAAATGCTC
GATCGGAAGGATATTTTGGTGGCTGCGCTTCAAAAACTCAACCAGCAGGG
AGAAGCAGAAGTTGCAGCAGCAACTACGTCAGCAGCCTCACCGTCGAGGA
GCAGCGGCGACGACAAAAGCATCAGCAGCAACAACAGTAGCAGTGGTAGC
AGCGGCAGCAACAGCGGTGGATTGCTCTTATATAAAACTGGGAGCCAGTC
AAGGGTTGACTTGTCGGGGTTTGAATTTACTTCTACTTTCAAGCAGAAAT
ATGCACGGGCGATTGATGCGTTGCAGCATACAAATGTCTTGTTGTCCTCC
GCTCTTGAGGGCCTGCAGAAGTTGACGCAGCACCAGCGGCAGGTAGTTGC
TGATAAGCAATCAACAGAGGGAGAGATGTATTGCTTGCAGCTGTATAATG
GAATGCTCGTCTCAAGGGTGGTGCGAGAGACGGTGGAAGGCGCGCGGGCC
GAGGGGCAGAAGGCATGCAAACGACACATAGCTGCCAAGTACGGATATTT
GTTGTCTTTATCAATCGGTAAATATGCTGATAATAATTATACTAATACTG
CTGCTGCTGCTGCTGCTGCTGTAAGTGGTAAAAAGCAGGTGACTTTGGAG
GAGGGGGGGTTGGTCCAAGGAGTGATAGAGGCAGGAGCGACCCTTCTAAT
GGTGATCCGGCGGTGTGCGGAGGAGCGCCATAAATGTTTAAGCAGGTTCA
ATGAAGGCGAGAGTGAGGACGAGGAAGACGAAGAGGAAGAGGTGGAGGAG
GAGGTGGAGAAAGAGAAGGAGGAGAAGGAGGAGGACAAGGAGGACAAGGA
GGACGAGGAGGACGAGGAGGCGGACGACGACGACGAGGAGGGAGGCGCTT
CTACTGTTACTGCTGCCATGCATCCGATAAGCGCGATGGAGGTGGAACAA
TGTATGGGGTTGGCATTGCTGGAGCTGAAACGGCAGTTAGTGCTGATAGA
CGGTGCTGGAAGGGACTCCAGTGAGGAGGAAAGGAAGGAGGAAGATGGGG
ATGAAGGGAAGGAGGAAGAGGAGGAGGAGGCTTTTCTTCAGGAAAAGCGC
TGTTTGGTTGATACCATTGAGTGTATTGTTGGTCTATTTAAAGATGAGCT
GTTGACTAGCCGAGGGGGATGGTATTATAGCAGCTGGGGTGAGAAGCATG
ACAGGGGGATTAACTTGTGA
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protein sequence of NO07G01800.1

>NO07G01800.1-protein ID=NO07G01800.1-protein|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=790bp
MDRLAHDPLEGGRGEGNGEGGLNSLVAFASFAARNDDLPLPTQQNLPPPL
PPVARMAPLIPQLSCPSRSNKKKRGRSTSPMSGKHDGRQLSNLESGGGGG
SVLRPPKHLYCAPPSSGGRESTTFDTSSSSWGLTSNNTSLTMLLHSLSMP
ALRRFAMAEFFYSTVDRAYFNQNTFQESLDAVGLSHVQKLTRTEWNRVRA
FIGRRRRMSPALFTQERQRLREYRQVVRDIQQGRIVEPPPEFTFEVPTPL
VVGQAVTAYHEKAKLLACGHILTCDYERGQYRVQFERPELSSLICQDSDI
ASNGASSLLLIGEPSRKQRLQDNDISIHASISGFHHLPSPINLSSLLLHH
RHSATLRTMEMEEQEEEGEERMENSENDMQQQVPKQQQQAQLMIFTLKML
DRKDILVAALQKLNQQGEAEVAAATTSAASPSRSSGDDKSISSNNSSSGS
SGSNSGGLLLYKTGSQSRVDLSGFEFTSTFKQKYARAIDALQHTNVLLSS
ALEGLQKLTQHQRQVVADKQSTEGEMYCLQLYNGMLVSRVVRETVEGARA
EGQKACKRHIAAKYGYLLSLSIGKYADNNYTNTAAAAAAAVSGKKQVTLE
EGGLVQGVIEAGATLLMVIRRCAEERHKCLSRFNEGESEDEEDEEEEVEE
EVEKEKEEKEEDKEDKEDEEDEEADDDDEEGGASTVTAAMHPISAMEVEQ
CMGLALLELKRQLVLIDGAGRDSSEEERKEEDGDEGKEEEEEEAFLQEKR
CLVDTIECIVGLFKDELLTSRGGWYYSSWGEKHDRGINL*
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mRNA from alignment at chr7:538218..540669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01800.1 ID=NO07G01800.1|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2452bp|location=Sequence derived from alignment at chr7:538218..540669+ (Nannochloropsis oceanica)
ATGGACCGCCTCGCGCACGACCCCCTTGAAGGAGGAAGAGGAGAAGGTAA TGGGGAAGGGGGTTTAAATTCGCTCGTGGCTTTTGCATCTTTTGCGGCTC GCAATGATGACTTGCCCTTGCCCACGCAGCAAAACCTCCCGCCTCCACTG CCTCCTGTCGCCCGTATGGCTCCCTTGATTCCTCAACTGTCATGCCCGTC GCGATCAAATAAAAAGAAAAGGGGACGCTCGACCTCGCCCATGAGTGGCA AGCATGATGGTCGCCAGTTATCGAATCTCGAAAGTGGCGGTGGTGGGGGC AGTGTGCTGAGGCCGCCGAAACACCTATATTGTGCTCCTCCTTCGTCCGG GGGAAGGGAATCTACCACTTTTGACACTAGCAGCAGCAGCTGGGGCCTGA CCAGCAACAATACCTCTCTTACAATGTTGCTACATTCGCTGTCCATGCCA GCGCTGCGTCGCTTCGCAATGGCTGAATTCTTTTATTCAACGGTGGATCG AGCTTATTTCAATCAAAATACATTTCAAGAGAGCTTGGACGCTGTAGGGC TTAGCCACGTGCAGAAATTGACGCGCACAGAATGGAATAGGGTTAGAGCA TTTATTGGAAGACGTCGGCGAATGAGCCCGGCGCTCTTTACGCAAGAGCG GCAGAGATTGAGGGAGTATCGGCAGGTGGTGCGGGATATTCAGCAAGGGC GAATTGTGGAGCCACCTCCGGGTATGTTTTTTAAAATAGTGATTTGTTAG CTAATCATGTAGTCATCCTCTCATCTCCCACTCCTTCCTTTTTCCAAATG CAGAATTCACTTTCGAAGTGCCTACCCCCTTGGTGGTGGGACAAGCGGTG ACAGCCTACCATGAGAAAGCAAAGCTACTGGCTTGTGGGCACATTCTCAC TTGCGATTACGAAAGAGGCCAGTACCGCGTTCAATTTGAGCGACCCGAGC TGAGCTCTCTAATTTGTCAGGACTCTGATATAGCTTCTAACGGGGCATCC TCTCTTTTGTTGATTGGCGAGCCCTCCCGAAAACAACGGCTCCAAGATAA CGATATTAGTATTCATGCTAGTATTTCTGGGTTTCATCACTTACCTTCAC CCATTAATTTGTCCTCGCTGCTGCTTCATCATCGTCACTCCGCTACTTTG AGAACTATGGAGATGGAGGAGCAGGAGGAGGAAGGAGAGGAGAGGATGGA AAACAGCGAGAACGATATGCAGCAGCAGGTACCAAAACAGCAACAACAAG CGCAACTAATGATTTTTACCCTCAAAATGCTCGATCGGAAGGATATTTTG GTGGCTGCGCTTCAAAAACTCAACCAGCAGGGAGAAGCAGAAGTTGCAGC AGCAACTACGTCAGCAGCCTCACCGTCGAGGAGCAGCGGCGACGACAAAA GCATCAGCAGCAACAACAGTAGCAGTGGTAGCAGCGGCAGCAACAGCGGT GGATTGCTCTTATATAAAACTGGGAGCCAGTCAAGGGTTGACTTGTCGGG GTTTGAATTTACTTCTACTTTCAAGCAGAAATATGCACGGGCGATTGATG CGTTGCAGCATACAAATGTCTTGTTGTCCTCCGCTCTTGAGGGCCTGCAG AAGTTGACGCAGCACCAGCGGCAGGTAGTTGCTGATAAGCAATCAACAGA GGGAGAGATGTATTGCTTGCAGCTGTATAATGGAATGCTCGTCTCAAGGG TGGTGCGAGAGACGGTGGAAGGCGCGCGGGCCGAGGGGCAGAAGGCATGC AAACGACACATAGCTGCCAAGTACGGATATTTGTTGTCTTTATCAATCGG TAAATATGCTGATAATAATTATACTAATACTGCTGCTGCTGCTGCTGCTG CTGTAAGTGGTAAAAAGCAGGTGACTTTGGAGGAGGGGGGGTTGGTCCAA GGAGTGATAGAGGCAGGAGCGACCCTTCTAATGGTGATCCGGCGGTGTGC GGAGGAGCGCCATAAATGTTTAAGCAGGTTCAATGAAGGCGAGAGTGAGG ACGAGGAAGACGAAGAGGAAGAGGTGGAGGAGGAGGTGGAGAAAGAGAAG GAGGAGAAGGAGGAGGACAAGGAGGACAAGGAGGACGAGGAGGACGAGGA GGCGGACGACGACGACGAGGAGGGAGGCGCTTCTACTGTTACTGCTGCCA TGCATCCGATAAGCGCGATGGAGGTGGAACAATGTATGGGGTTGGCATTG CTGGAGCTGAAACGGCAGTTAGTGCTGATAGACGGTGCTGGAAGGGACTC CAGTGAGGAGGAAAGGAAGGAGGAAGATGGGGATGAAGGGAAGGAGGAAG AGGAGGAGGAGGCTTTTCTTCAGGAAAAGCGCTGTTTGGTTGATACCATT GAGTGTATTGTTGGTCTATTTAAAGATGAGCTGTTGACTAGCCGAGGGGG ATGGTATTATAGCAGCTGGGGTGAGAAGCATGACAGGGGGATTAACTTGT GA
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Coding sequence (CDS) from alignment at chr7:538218..540669+

>NO07G01800.1 ID=NO07G01800.1|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=2370bp|location=Sequence derived from alignment at chr7:538218..540669+ (Nannochloropsis oceanica)
ATGGACCGCCTCGCGCACGACCCCCTTGAAGGAGGAAGAGGAGAAGGTAA
TGGGGAAGGGGGTTTAAATTCGCTCGTGGCTTTTGCATCTTTTGCGGCTC
GCAATGATGACTTGCCCTTGCCCACGCAGCAAAACCTCCCGCCTCCACTG
CCTCCTGTCGCCCGTATGGCTCCCTTGATTCCTCAACTGTCATGCCCGTC
GCGATCAAATAAAAAGAAAAGGGGACGCTCGACCTCGCCCATGAGTGGCA
AGCATGATGGTCGCCAGTTATCGAATCTCGAAAGTGGCGGTGGTGGGGGC
AGTGTGCTGAGGCCGCCGAAACACCTATATTGTGCTCCTCCTTCGTCCGG
GGGAAGGGAATCTACCACTTTTGACACTAGCAGCAGCAGCTGGGGCCTGA
CCAGCAACAATACCTCTCTTACAATGTTGCTACATTCGCTGTCCATGCCA
GCGCTGCGTCGCTTCGCAATGGCTGAATTCTTTTATTCAACGGTGGATCG
AGCTTATTTCAATCAAAATACATTTCAAGAGAGCTTGGACGCTGTAGGGC
TTAGCCACGTGCAGAAATTGACGCGCACAGAATGGAATAGGGTTAGAGCA
TTTATTGGAAGACGTCGGCGAATGAGCCCGGCGCTCTTTACGCAAGAGCG
GCAGAGATTGAGGGAGTATCGGCAGGTGGTGCGGGATATTCAGCAAGGGC
GAATTGTGGAGCCACCTCCGGAATTCACTTTCGAAGTGCCTACCCCCTTG
GTGGTGGGACAAGCGGTGACAGCCTACCATGAGAAAGCAAAGCTACTGGC
TTGTGGGCACATTCTCACTTGCGATTACGAAAGAGGCCAGTACCGCGTTC
AATTTGAGCGACCCGAGCTGAGCTCTCTAATTTGTCAGGACTCTGATATA
GCTTCTAACGGGGCATCCTCTCTTTTGTTGATTGGCGAGCCCTCCCGAAA
ACAACGGCTCCAAGATAACGATATTAGTATTCATGCTAGTATTTCTGGGT
TTCATCACTTACCTTCACCCATTAATTTGTCCTCGCTGCTGCTTCATCAT
CGTCACTCCGCTACTTTGAGAACTATGGAGATGGAGGAGCAGGAGGAGGA
AGGAGAGGAGAGGATGGAAAACAGCGAGAACGATATGCAGCAGCAGGTAC
CAAAACAGCAACAACAAGCGCAACTAATGATTTTTACCCTCAAAATGCTC
GATCGGAAGGATATTTTGGTGGCTGCGCTTCAAAAACTCAACCAGCAGGG
AGAAGCAGAAGTTGCAGCAGCAACTACGTCAGCAGCCTCACCGTCGAGGA
GCAGCGGCGACGACAAAAGCATCAGCAGCAACAACAGTAGCAGTGGTAGC
AGCGGCAGCAACAGCGGTGGATTGCTCTTATATAAAACTGGGAGCCAGTC
AAGGGTTGACTTGTCGGGGTTTGAATTTACTTCTACTTTCAAGCAGAAAT
ATGCACGGGCGATTGATGCGTTGCAGCATACAAATGTCTTGTTGTCCTCC
GCTCTTGAGGGCCTGCAGAAGTTGACGCAGCACCAGCGGCAGGTAGTTGC
TGATAAGCAATCAACAGAGGGAGAGATGTATTGCTTGCAGCTGTATAATG
GAATGCTCGTCTCAAGGGTGGTGCGAGAGACGGTGGAAGGCGCGCGGGCC
GAGGGGCAGAAGGCATGCAAACGACACATAGCTGCCAAGTACGGATATTT
GTTGTCTTTATCAATCGGTAAATATGCTGATAATAATTATACTAATACTG
CTGCTGCTGCTGCTGCTGCTGTAAGTGGTAAAAAGCAGGTGACTTTGGAG
GAGGGGGGGTTGGTCCAAGGAGTGATAGAGGCAGGAGCGACCCTTCTAAT
GGTGATCCGGCGGTGTGCGGAGGAGCGCCATAAATGTTTAAGCAGGTTCA
ATGAAGGCGAGAGTGAGGACGAGGAAGACGAAGAGGAAGAGGTGGAGGAG
GAGGTGGAGAAAGAGAAGGAGGAGAAGGAGGAGGACAAGGAGGACAAGGA
GGACGAGGAGGACGAGGAGGCGGACGACGACGACGAGGAGGGAGGCGCTT
CTACTGTTACTGCTGCCATGCATCCGATAAGCGCGATGGAGGTGGAACAA
TGTATGGGGTTGGCATTGCTGGAGCTGAAACGGCAGTTAGTGCTGATAGA
CGGTGCTGGAAGGGACTCCAGTGAGGAGGAAAGGAAGGAGGAAGATGGGG
ATGAAGGGAAGGAGGAAGAGGAGGAGGAGGCTTTTCTTCAGGAAAAGCGC
TGTTTGGTTGATACCATTGAGTGTATTGTTGGTCTATTTAAAGATGAGCT
GTTGACTAGCCGAGGGGGATGGTATTATAGCAGCTGGGGTGAGAAGCATG
ACAGGGGGATTAACTTGTGA
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Synonyms
Publications