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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:538218..540669 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01800.1 vs.
Match: EWM27156.1 (always early protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 114.8 bits (286), Expect = 1.200e-21 Identity = 141/525 (26.86%), Postives = 233/525 (44.38%), Query Frame = 0
Query: 143 LLHSLSMPALRRFAMAEFFYSTVDRAYFNQNTFQESLDAVGLSHVQKLTRTEWNRVRAFIGRRRRMSPALFTQERQRLREYRQVVRDIQQGRIVEPPPEFTFEVPTPLVVGQAVTAYHEKAKLLACGHILTCDYERGQYRVQFERPELSSLICQDSDIASNGASSLL--LIGEPSRKQRLQDNDISIHASISGFHHLPSPINLSSL----LLHHRHSATLRTMEMEEQEEEGEERMENSENDMQQQVPKQQQQAQLMIFTLKMLDRKDILVAALQKLNQQGEAEVAAATTSAASPSRSSGDDKSISSNNSSSGSSGSNSG----GLLLYKTGSQSRVDLSG---FEFTSTFKQKYARAIDALQHTNVLLSSALEGLQKLTQHQRQVVADKQSTEGEMYCLQLYNGMLVSRVVRETVEGARAEGQKACKRHIAAKYGYLLSLSIGKYADNNYTNTAAAAAAAVSGKKQVTLEEGGLVQGVIEAGATLLMVIRRCAEERHKCLSRFNEGESEDEEDEEEEVEEEVEK 655
L SLS ++RRFA+ EFFY+TVDR Y N N F + LD +GL H++K++RTEW+ VR F GRRRR+SP QERQ+L ++R++ R Q+ + + ++P L VG V AY K L G ILT +Y+ +YR+QFE P L +++C D++++ G S +PS D A F + SS + ++ ++++ ++G+ + QLMIFTL+ML RK+IL+ L+ ++Q + + + + P + S GSSG+N G L + + S L + +S Q+Y A + +NV SA +L H + + +L + + V GA E A HI Y D +++ GK++V G ++++ +L V++ CA++ +F++ +S D + V E+E+
Sbjct: 42 LAQSLST-SVRRFAVTEFFYATVDRGYLNSNCFGKRLDELGLRHIRKISRTEWDIVRLFFGRRRRLSPLFLRQERQKLHKFRRMARISQRQSVNH--FDLENQMPLYLTVGSNVQAYDIKRNFLGRGKILTANYDISRYRIQFEDPSLGTILCADTELSIQGIPSFTHNTSSDPS------DGIFPTQAGNKHFFQACTTTKGSSFGQSGFDNISWASFSKSIDFSSPADQGKVEV-----------------VQLMIFTLRMLHRKEILLEILETFDRQVRKSLESKSPRNSLP----------MNTRKSYGSSGANYGLRDRNKLFHPKSTDSISALRNDILWNDSSLLIQEYHWIFHAFRRSNVAFKSA---FGRLLIHGKSRYISSGQIVPRSWNAELGKKKRPNNFADDVVRGAWKESISAISHHIQT-VSY----------DETIEEIPRISSSRDIGKRKVL---SGQDHVLLKSAVAMLFVLKECADK------QFSQMQSYDRDKVMSFVALEMER 507
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01800.1 ID=NO07G01800.1|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp ATGGACCGCCTCGCGCACGACCCCCTTGAAGGAGGAAGAGGAGAAGGTAA TGGGGAAGGGGGTTTAAATTCGCTCGTGGCTTTTGCATCTTTTGCGGCTC GCAATGATGACTTGCCCTTGCCCACGCAGCAAAACCTCCCGCCTCCACTG CCTCCTGTCGCCCGTATGGCTCCCTTGATTCCTCAACTGTCATGCCCGTC GCGATCAAATAAAAAGAAAAGGGGACGCTCGACCTCGCCCATGAGTGGCA AGCATGATGGTCGCCAGTTATCGAATCTCGAAAGTGGCGGTGGTGGGGGC AGTGTGCTGAGGCCGCCGAAACACCTATATTGTGCTCCTCCTTCGTCCGG GGGAAGGGAATCTACCACTTTTGACACTAGCAGCAGCAGCTGGGGCCTGA CCAGCAACAATACCTCTCTTACAATGTTGCTACATTCGCTGTCCATGCCA GCGCTGCGTCGCTTCGCAATGGCTGAATTCTTTTATTCAACGGTGGATCG AGCTTATTTCAATCAAAATACATTTCAAGAGAGCTTGGACGCTGTAGGGC TTAGCCACGTGCAGAAATTGACGCGCACAGAATGGAATAGGGTTAGAGCA TTTATTGGAAGACGTCGGCGAATGAGCCCGGCGCTCTTTACGCAAGAGCG GCAGAGATTGAGGGAGTATCGGCAGGTGGTGCGGGATATTCAGCAAGGGC GAATTGTGGAGCCACCTCCGGAATTCACTTTCGAAGTGCCTACCCCCTTG GTGGTGGGACAAGCGGTGACAGCCTACCATGAGAAAGCAAAGCTACTGGC TTGTGGGCACATTCTCACTTGCGATTACGAAAGAGGCCAGTACCGCGTTC AATTTGAGCGACCCGAGCTGAGCTCTCTAATTTGTCAGGACTCTGATATA GCTTCTAACGGGGCATCCTCTCTTTTGTTGATTGGCGAGCCCTCCCGAAA ACAACGGCTCCAAGATAACGATATTAGTATTCATGCTAGTATTTCTGGGT TTCATCACTTACCTTCACCCATTAATTTGTCCTCGCTGCTGCTTCATCAT CGTCACTCCGCTACTTTGAGAACTATGGAGATGGAGGAGCAGGAGGAGGA AGGAGAGGAGAGGATGGAAAACAGCGAGAACGATATGCAGCAGCAGGTAC CAAAACAGCAACAACAAGCGCAACTAATGATTTTTACCCTCAAAATGCTC GATCGGAAGGATATTTTGGTGGCTGCGCTTCAAAAACTCAACCAGCAGGG AGAAGCAGAAGTTGCAGCAGCAACTACGTCAGCAGCCTCACCGTCGAGGA GCAGCGGCGACGACAAAAGCATCAGCAGCAACAACAGTAGCAGTGGTAGC AGCGGCAGCAACAGCGGTGGATTGCTCTTATATAAAACTGGGAGCCAGTC AAGGGTTGACTTGTCGGGGTTTGAATTTACTTCTACTTTCAAGCAGAAAT ATGCACGGGCGATTGATGCGTTGCAGCATACAAATGTCTTGTTGTCCTCC GCTCTTGAGGGCCTGCAGAAGTTGACGCAGCACCAGCGGCAGGTAGTTGC TGATAAGCAATCAACAGAGGGAGAGATGTATTGCTTGCAGCTGTATAATG GAATGCTCGTCTCAAGGGTGGTGCGAGAGACGGTGGAAGGCGCGCGGGCC GAGGGGCAGAAGGCATGCAAACGACACATAGCTGCCAAGTACGGATATTT GTTGTCTTTATCAATCGGTAAATATGCTGATAATAATTATACTAATACTG CTGCTGCTGCTGCTGCTGCTGTAAGTGGTAAAAAGCAGGTGACTTTGGAG GAGGGGGGGTTGGTCCAAGGAGTGATAGAGGCAGGAGCGACCCTTCTAAT GGTGATCCGGCGGTGTGCGGAGGAGCGCCATAAATGTTTAAGCAGGTTCA ATGAAGGCGAGAGTGAGGACGAGGAAGACGAAGAGGAAGAGGTGGAGGAG GAGGTGGAGAAAGAGAAGGAGGAGAAGGAGGAGGACAAGGAGGACAAGGA GGACGAGGAGGACGAGGAGGCGGACGACGACGACGAGGAGGGAGGCGCTT CTACTGTTACTGCTGCCATGCATCCGATAAGCGCGATGGAGGTGGAACAA TGTATGGGGTTGGCATTGCTGGAGCTGAAACGGCAGTTAGTGCTGATAGA CGGTGCTGGAAGGGACTCCAGTGAGGAGGAAAGGAAGGAGGAAGATGGGG ATGAAGGGAAGGAGGAAGAGGAGGAGGAGGCTTTTCTTCAGGAAAAGCGC TGTTTGGTTGATACCATTGAGTGTATTGTTGGTCTATTTAAAGATGAGCT GTTGACTAGCCGAGGGGGATGGTATTATAGCAGCTGGGGTGAGAAGCATG ACAGGGGGATTAACTTGTGA back to topprotein sequence of NO07G01800.1 >NO07G01800.1-protein ID=NO07G01800.1-protein|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=790bp MDRLAHDPLEGGRGEGNGEGGLNSLVAFASFAARNDDLPLPTQQNLPPPL PPVARMAPLIPQLSCPSRSNKKKRGRSTSPMSGKHDGRQLSNLESGGGGG SVLRPPKHLYCAPPSSGGRESTTFDTSSSSWGLTSNNTSLTMLLHSLSMP ALRRFAMAEFFYSTVDRAYFNQNTFQESLDAVGLSHVQKLTRTEWNRVRA FIGRRRRMSPALFTQERQRLREYRQVVRDIQQGRIVEPPPEFTFEVPTPL VVGQAVTAYHEKAKLLACGHILTCDYERGQYRVQFERPELSSLICQDSDI ASNGASSLLLIGEPSRKQRLQDNDISIHASISGFHHLPSPINLSSLLLHH RHSATLRTMEMEEQEEEGEERMENSENDMQQQVPKQQQQAQLMIFTLKML DRKDILVAALQKLNQQGEAEVAAATTSAASPSRSSGDDKSISSNNSSSGS SGSNSGGLLLYKTGSQSRVDLSGFEFTSTFKQKYARAIDALQHTNVLLSS ALEGLQKLTQHQRQVVADKQSTEGEMYCLQLYNGMLVSRVVRETVEGARA EGQKACKRHIAAKYGYLLSLSIGKYADNNYTNTAAAAAAAVSGKKQVTLE EGGLVQGVIEAGATLLMVIRRCAEERHKCLSRFNEGESEDEEDEEEEVEE EVEKEKEEKEEDKEDKEDEEDEEADDDDEEGGASTVTAAMHPISAMEVEQ CMGLALLELKRQLVLIDGAGRDSSEEERKEEDGDEGKEEEEEEAFLQEKR CLVDTIECIVGLFKDELLTSRGGWYYSSWGEKHDRGINL* back to topmRNA from alignment at chr7:538218..540669+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01800.1 ID=NO07G01800.1|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2452bp|location=Sequence derived from alignment at chr7:538218..540669+ (Nannochloropsis oceanica) ATGGACCGCCTCGCGCACGACCCCCTTGAAGGAGGAAGAGGAGAAGGTAA
TGGGGAAGGGGGTTTAAATTCGCTCGTGGCTTTTGCATCTTTTGCGGCTC
GCAATGATGACTTGCCCTTGCCCACGCAGCAAAACCTCCCGCCTCCACTG
CCTCCTGTCGCCCGTATGGCTCCCTTGATTCCTCAACTGTCATGCCCGTC
GCGATCAAATAAAAAGAAAAGGGGACGCTCGACCTCGCCCATGAGTGGCA
AGCATGATGGTCGCCAGTTATCGAATCTCGAAAGTGGCGGTGGTGGGGGC
AGTGTGCTGAGGCCGCCGAAACACCTATATTGTGCTCCTCCTTCGTCCGG
GGGAAGGGAATCTACCACTTTTGACACTAGCAGCAGCAGCTGGGGCCTGA
CCAGCAACAATACCTCTCTTACAATGTTGCTACATTCGCTGTCCATGCCA
GCGCTGCGTCGCTTCGCAATGGCTGAATTCTTTTATTCAACGGTGGATCG
AGCTTATTTCAATCAAAATACATTTCAAGAGAGCTTGGACGCTGTAGGGC
TTAGCCACGTGCAGAAATTGACGCGCACAGAATGGAATAGGGTTAGAGCA
TTTATTGGAAGACGTCGGCGAATGAGCCCGGCGCTCTTTACGCAAGAGCG
GCAGAGATTGAGGGAGTATCGGCAGGTGGTGCGGGATATTCAGCAAGGGC
GAATTGTGGAGCCACCTCCGGGTATGTTTTTTAAAATAGTGATTTGTTAG
CTAATCATGTAGTCATCCTCTCATCTCCCACTCCTTCCTTTTTCCAAATG
CAGAATTCACTTTCGAAGTGCCTACCCCCTTGGTGGTGGGACAAGCGGTG
ACAGCCTACCATGAGAAAGCAAAGCTACTGGCTTGTGGGCACATTCTCAC
TTGCGATTACGAAAGAGGCCAGTACCGCGTTCAATTTGAGCGACCCGAGC
TGAGCTCTCTAATTTGTCAGGACTCTGATATAGCTTCTAACGGGGCATCC
TCTCTTTTGTTGATTGGCGAGCCCTCCCGAAAACAACGGCTCCAAGATAA
CGATATTAGTATTCATGCTAGTATTTCTGGGTTTCATCACTTACCTTCAC
CCATTAATTTGTCCTCGCTGCTGCTTCATCATCGTCACTCCGCTACTTTG
AGAACTATGGAGATGGAGGAGCAGGAGGAGGAAGGAGAGGAGAGGATGGA
AAACAGCGAGAACGATATGCAGCAGCAGGTACCAAAACAGCAACAACAAG
CGCAACTAATGATTTTTACCCTCAAAATGCTCGATCGGAAGGATATTTTG
GTGGCTGCGCTTCAAAAACTCAACCAGCAGGGAGAAGCAGAAGTTGCAGC
AGCAACTACGTCAGCAGCCTCACCGTCGAGGAGCAGCGGCGACGACAAAA
GCATCAGCAGCAACAACAGTAGCAGTGGTAGCAGCGGCAGCAACAGCGGT
GGATTGCTCTTATATAAAACTGGGAGCCAGTCAAGGGTTGACTTGTCGGG
GTTTGAATTTACTTCTACTTTCAAGCAGAAATATGCACGGGCGATTGATG
CGTTGCAGCATACAAATGTCTTGTTGTCCTCCGCTCTTGAGGGCCTGCAG
AAGTTGACGCAGCACCAGCGGCAGGTAGTTGCTGATAAGCAATCAACAGA
GGGAGAGATGTATTGCTTGCAGCTGTATAATGGAATGCTCGTCTCAAGGG
TGGTGCGAGAGACGGTGGAAGGCGCGCGGGCCGAGGGGCAGAAGGCATGC
AAACGACACATAGCTGCCAAGTACGGATATTTGTTGTCTTTATCAATCGG
TAAATATGCTGATAATAATTATACTAATACTGCTGCTGCTGCTGCTGCTG
CTGTAAGTGGTAAAAAGCAGGTGACTTTGGAGGAGGGGGGGTTGGTCCAA
GGAGTGATAGAGGCAGGAGCGACCCTTCTAATGGTGATCCGGCGGTGTGC
GGAGGAGCGCCATAAATGTTTAAGCAGGTTCAATGAAGGCGAGAGTGAGG
ACGAGGAAGACGAAGAGGAAGAGGTGGAGGAGGAGGTGGAGAAAGAGAAG
GAGGAGAAGGAGGAGGACAAGGAGGACAAGGAGGACGAGGAGGACGAGGA
GGCGGACGACGACGACGAGGAGGGAGGCGCTTCTACTGTTACTGCTGCCA
TGCATCCGATAAGCGCGATGGAGGTGGAACAATGTATGGGGTTGGCATTG
CTGGAGCTGAAACGGCAGTTAGTGCTGATAGACGGTGCTGGAAGGGACTC
CAGTGAGGAGGAAAGGAAGGAGGAAGATGGGGATGAAGGGAAGGAGGAAG
AGGAGGAGGAGGCTTTTCTTCAGGAAAAGCGCTGTTTGGTTGATACCATT
GAGTGTATTGTTGGTCTATTTAAAGATGAGCTGTTGACTAGCCGAGGGGG
ATGGTATTATAGCAGCTGGGGTGAGAAGCATGACAGGGGGATTAACTTGT
GA back to topCoding sequence (CDS) from alignment at chr7:538218..540669+ >NO07G01800.1 ID=NO07G01800.1|Name=NO07G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=2370bp|location=Sequence derived from alignment at chr7:538218..540669+ (Nannochloropsis oceanica) ATGGACCGCCTCGCGCACGACCCCCTTGAAGGAGGAAGAGGAGAAGGTAA TGGGGAAGGGGGTTTAAATTCGCTCGTGGCTTTTGCATCTTTTGCGGCTC GCAATGATGACTTGCCCTTGCCCACGCAGCAAAACCTCCCGCCTCCACTG CCTCCTGTCGCCCGTATGGCTCCCTTGATTCCTCAACTGTCATGCCCGTC GCGATCAAATAAAAAGAAAAGGGGACGCTCGACCTCGCCCATGAGTGGCA AGCATGATGGTCGCCAGTTATCGAATCTCGAAAGTGGCGGTGGTGGGGGC AGTGTGCTGAGGCCGCCGAAACACCTATATTGTGCTCCTCCTTCGTCCGG GGGAAGGGAATCTACCACTTTTGACACTAGCAGCAGCAGCTGGGGCCTGA CCAGCAACAATACCTCTCTTACAATGTTGCTACATTCGCTGTCCATGCCA GCGCTGCGTCGCTTCGCAATGGCTGAATTCTTTTATTCAACGGTGGATCG AGCTTATTTCAATCAAAATACATTTCAAGAGAGCTTGGACGCTGTAGGGC TTAGCCACGTGCAGAAATTGACGCGCACAGAATGGAATAGGGTTAGAGCA TTTATTGGAAGACGTCGGCGAATGAGCCCGGCGCTCTTTACGCAAGAGCG GCAGAGATTGAGGGAGTATCGGCAGGTGGTGCGGGATATTCAGCAAGGGC GAATTGTGGAGCCACCTCCGGAATTCACTTTCGAAGTGCCTACCCCCTTG GTGGTGGGACAAGCGGTGACAGCCTACCATGAGAAAGCAAAGCTACTGGC TTGTGGGCACATTCTCACTTGCGATTACGAAAGAGGCCAGTACCGCGTTC AATTTGAGCGACCCGAGCTGAGCTCTCTAATTTGTCAGGACTCTGATATA GCTTCTAACGGGGCATCCTCTCTTTTGTTGATTGGCGAGCCCTCCCGAAA ACAACGGCTCCAAGATAACGATATTAGTATTCATGCTAGTATTTCTGGGT TTCATCACTTACCTTCACCCATTAATTTGTCCTCGCTGCTGCTTCATCAT CGTCACTCCGCTACTTTGAGAACTATGGAGATGGAGGAGCAGGAGGAGGA AGGAGAGGAGAGGATGGAAAACAGCGAGAACGATATGCAGCAGCAGGTAC CAAAACAGCAACAACAAGCGCAACTAATGATTTTTACCCTCAAAATGCTC GATCGGAAGGATATTTTGGTGGCTGCGCTTCAAAAACTCAACCAGCAGGG AGAAGCAGAAGTTGCAGCAGCAACTACGTCAGCAGCCTCACCGTCGAGGA GCAGCGGCGACGACAAAAGCATCAGCAGCAACAACAGTAGCAGTGGTAGC AGCGGCAGCAACAGCGGTGGATTGCTCTTATATAAAACTGGGAGCCAGTC AAGGGTTGACTTGTCGGGGTTTGAATTTACTTCTACTTTCAAGCAGAAAT ATGCACGGGCGATTGATGCGTTGCAGCATACAAATGTCTTGTTGTCCTCC GCTCTTGAGGGCCTGCAGAAGTTGACGCAGCACCAGCGGCAGGTAGTTGC TGATAAGCAATCAACAGAGGGAGAGATGTATTGCTTGCAGCTGTATAATG GAATGCTCGTCTCAAGGGTGGTGCGAGAGACGGTGGAAGGCGCGCGGGCC GAGGGGCAGAAGGCATGCAAACGACACATAGCTGCCAAGTACGGATATTT GTTGTCTTTATCAATCGGTAAATATGCTGATAATAATTATACTAATACTG CTGCTGCTGCTGCTGCTGCTGTAAGTGGTAAAAAGCAGGTGACTTTGGAG GAGGGGGGGTTGGTCCAAGGAGTGATAGAGGCAGGAGCGACCCTTCTAAT GGTGATCCGGCGGTGTGCGGAGGAGCGCCATAAATGTTTAAGCAGGTTCA ATGAAGGCGAGAGTGAGGACGAGGAAGACGAAGAGGAAGAGGTGGAGGAG GAGGTGGAGAAAGAGAAGGAGGAGAAGGAGGAGGACAAGGAGGACAAGGA GGACGAGGAGGACGAGGAGGCGGACGACGACGACGAGGAGGGAGGCGCTT CTACTGTTACTGCTGCCATGCATCCGATAAGCGCGATGGAGGTGGAACAA TGTATGGGGTTGGCATTGCTGGAGCTGAAACGGCAGTTAGTGCTGATAGA CGGTGCTGGAAGGGACTCCAGTGAGGAGGAAAGGAAGGAGGAAGATGGGG ATGAAGGGAAGGAGGAAGAGGAGGAGGAGGCTTTTCTTCAGGAAAAGCGC TGTTTGGTTGATACCATTGAGTGTATTGTTGGTCTATTTAAAGATGAGCT GTTGACTAGCCGAGGGGGATGGTATTATAGCAGCTGGGGTGAGAAGCATG ACAGGGGGATTAACTTGTGA back to top
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