NO07G01740.1, NO07G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01740.1
Unique NameNO07G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr7:522963..524974 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:522963..524974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G01740.1 vs.
Match: EWM27216.1 (dimethyladenosine transferase [Nannochloropsis gaditana])

HSP 1 Score: 533.5 bits (1373), Expect = 6.800e-148
Identity = 304/456 (66.67%), Postives = 343/456 (75.22%), Query Frame = 0 
Query:   44 MAAPRRTIRRPV-LSSFASMTVLMAAAVALGMQVAHATITMARKSSSSMDRIGVRQC------------SCWLSGFVVRSGRSLSHT-----PRVFRTNTVRLRQVIQQWSSSDGATPSSSTTTAPSSATSPAAFSDEPTRPPTLPSQEFKPKQSLGQNFLSDQNYVLKIVTALVDSSPGGRRVVELGPGPGALTRVLHRRYPEMLAVEIDSRAIAVLNEALPDLCVVQSDVLQVDWTVLAELRGGPLSVIGNLPYHITSQILFCLLDNHRAVRQAVVTMQLEVAQRITAPTRCKDYGILSVLFQLYTKPRINFKLPPTVFYPQPKVTSALVTLDFLQPAEGKPLFDVDPAALKQVLNLSFQQRRKMLRQSLKGLLAARDVTLDEEWATKRPEELEPAHFVKLTKLLFGPAT----AGSNNSRFSAANQGQRGQTRVWRRARHGGLEEDEKEEEEE 478
            MAAP R  RR   LS  A+M+ ++AAA     Q A      A+ ++ +  RI +R+C             C   G  V +G    H      P +     V   ++   WSS DG   S S TTA +S  +P     +PTRPPTLPSQEF+PKQSLGQNFLSDQNYVLKIV +LVD SPGGRRVVELGPGPGALTRVLHRRYP+MLAVEID RA+A+LNEALP L VVQSDVLQVDWT LAELRGGPLSVIGNLPYHITSQILFCLLDNHR VRQAVVTMQLEVAQRI APTRCKDYGILSVLFQLYT+PRINFKLPPTVFYPQPKVTSALVTLDFLQP  G+P+FDV+P ALKQVLNLSFQQRRKMLRQSLKGLLA+R +TLDEEWATKRPEELEPA FV+LT+LLFG AT     GS ++  S     ++ QTRVWRRARHGG +E ++ +E +
Sbjct:    2 MAAPSRLPRRVASLSWGATMSAILAAAATFWTQKAVGATYSAKWNNINRPRI-MRECFLLPKCIARGDPRCSPPGLTVFTGLKRGHDYSNNYPCLTNETIVCEDKLKSSWSSVDGGNGSPSPTTASASGLAPPT---DPTRPPTLPSQEFRPKQSLGQNFLSDQNYVLKIVQSLVDKSPGGRRVVELGPGPGALTRVLHRRYPDMLAVEIDPRAVALLNEALPSLNVVQSDVLQVDWTALAELRGGPLSVIGNLPYHITSQILFCLLDNHRTVRQAVVTMQLEVAQRIVAPTRCKDYGILSVLFQLYTRPRINFKLPPTVFYPQPKVTSALVTLDFLQPVHGQPIFDVEPGALKQVLNLSFQQRRKMLRQSLKGLLASRGLTLDEEWATKRPEELEPAQFVELTRLLFGSATEKHHKGSEDNIESEERHLKQEQTRVWRRARHGGFDETDEGDEND 453
The following BLAST results are available for this feature:
BLAST of NO07G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27216.16.800e-14866.67dimethyladenosine transferase [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01740NO07G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01740.1NO07G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01740.1.cds1NO07G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01740.1.cds2NO07G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01740.1 ID=NO07G01740.1|Name=NO07G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp
CATGTATTCATTGTTTATTGATTGATTTATTGATTGACTAATCGATTAAT
TGATTGATTGATCTATGAGTTAAGTTTTCATCAGTCAACGACGAACCTCC
CCAGCAGTTCGTTCCATTTGTCCTTGACTTCGCATTTCTTTATTCTGAGG
GCTGCACTTGGGGACAGTTCTTTCGGCCTGGTATCGTAAGAGCTCGCAGT
ACGTTCTAAGCCTTGAACATCACGGAAACCACCGGTAAAAAGTTGACATG
AGTGCTGCTTGAGCGCGACGAACAACGTCCAGCACTGCGGTCTTAAGTTG
AATGGATGGGTATGAAGCGGAAGGCAAAGATAGTGATCTTTACACGAAGA
CAAGAGATAGAGAAAACAATCACACACGTCCCCCTCTACCCACTTTGCTA
CACAGACAGCATTGGCGGCATCACCGGCCCCAGGATGGCCGCGCCCCGAC
GCACAATACGAAGACCTGTCTTGAGCTCGTTTGCAAGCATGACTGTTCTC
ATGGCCGCTGCGGTCGCACTGGGCATGCAGGTAGCCCACGCCACCATCAC
CATGGCAAGAAAGAGTAGCAGCAGTATGGACAGGATAGGAGTTAGACAAT
GCTCGTGTTGGCTGTCCGGCTTTGTGGTGAGGAGCGGCCGCAGCCTCAGC
CACACCCCACGTGTATTCCGCACCAACACTGTCCGCCTAAGACAAGTCAT
ACAACAATGGTCCTCGTCCGATGGAGCCACTCCCAGCTCCAGCACCACAA
CCGCTCCCTCCTCAGCCACCAGCCCTGCGGCTTTCTCCGACGAGCCCACC
CGCCCCCCCACCCTCCCCTCCCAAGAGTTCAAACCAAAGCAATCCCTCGG
TCAAAATTTTCTGTCTGATCAAAATTATGTTTTGAAAATCGTGACTGCCT
TGGTAGATTCTAGCCCGGGAGGGAGACGAGTGGTGGAATTGGGGCCTGGT
CCTGGTGCCTTGACAAGGGTGCTGCATCGACGGTACCCCGAAATGCTAGC
CGTGGAAATCGACTCTCGCGCCATAGCTGTTTTGAACGAGGCCTTGCCAG
ACTTGTGTGTGGTACAATCGGATGTTCTACAAGTGGATTGGACAGTTTTG
GCGGAGCTGAGGGGAGGGCCCTTGTCGGTGATAGGAAATTTACCTTACCA
CATCACGAGCCAAATTTTGTTTTGTTTGCTGGACAACCATCGAGCGGTGC
GTCAAGCCGTGGTCACCATGCAGCTGGAGGTAGCACAGCGGATTACGGCA
CCCACTCGATGCAAAGACTATGGGATATTGTCGGTGCTTTTCCAGTTGTA
CACAAAGCCGCGAATTAATTTCAAGCTTCCCCCCACAGTCTTCTATCCCC
AGCCCAAAGTGACCTCAGCGTTGGTGACGCTCGATTTCTTGCAGCCTGCC
GAGGGCAAGCCGCTTTTCGACGTGGACCCCGCGGCACTAAAACAGGTGTT
AAATTTAAGTTTCCAACAGCGGCGCAAGATGTTGCGACAGAGCTTGAAGG
GCTTGCTTGCTGCCCGGGATGTCACATTAGATGAGGAGTGGGCAACGAAG
CGACCCGAGGAATTAGAGCCCGCCCACTTTGTTAAATTGACCAAATTATT
ATTTGGCCCTGCCACAGCAGGTAGCAATAACAGCCGCTTCAGCGCCGCGA
ATCAGGGTCAGAGGGGGCAGACTCGCGTGTGGCGACGAGCGCGCCATGGG
GGCTTGGAGGAGGACGAGAAGGAGGAGGAGGAGGAGGAGGAGTAGAAGTA
GTAGTAGTAGTAGTAGTAGT
back to top

protein sequence of NO07G01740.1

>NO07G01740.1-protein ID=NO07G01740.1-protein|Name=NO07G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MGMKRKAKIVIFTRRQEIEKTITHVPLYPLCYTDSIGGITGPRMAAPRRT
IRRPVLSSFASMTVLMAAAVALGMQVAHATITMARKSSSSMDRIGVRQCS
CWLSGFVVRSGRSLSHTPRVFRTNTVRLRQVIQQWSSSDGATPSSSTTTA
PSSATSPAAFSDEPTRPPTLPSQEFKPKQSLGQNFLSDQNYVLKIVTALV
DSSPGGRRVVELGPGPGALTRVLHRRYPEMLAVEIDSRAIAVLNEALPDL
CVVQSDVLQVDWTVLAELRGGPLSVIGNLPYHITSQILFCLLDNHRAVRQ
AVVTMQLEVAQRITAPTRCKDYGILSVLFQLYTKPRINFKLPPTVFYPQP
KVTSALVTLDFLQPAEGKPLFDVDPAALKQVLNLSFQQRRKMLRQSLKGL
LAARDVTLDEEWATKRPEELEPAHFVKLTKLLFGPATAGSNNSRFSAANQ
GQRGQTRVWRRARHGGLEEDEKEEEEEEE*
back to top

mRNA from alignment at chr7:522963..524974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01740.1 ID=NO07G01740.1|Name=NO07G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at chr7:522963..524974- (Nannochloropsis oceanica)
CATGTATTCATTGTTTATTGATTGATTTATTGATTGACTAATCGATTAAT
TGATTGATTGATCTATGAGTTAAGTTTTCATCAGTCAACGACGAACCTCC
CCAGCAGTTCGTTCCATTTGTCCTTGACTTCGCATTTCTTTATTCTGAGG
GCTGCACTTGGGGACAGTTCTTTCGGCCTGGTATCGTAAGAGCTCGCAGT
ACGTTCTAAGCCTTGAACATCACGGAAACCACCGGTAAAAAGTTGACATG
AGTGCTGCTTGAGCGCGACGAACAACGTCCAGCACTGCGGTCTTAAGTTG
AATGGATGGGTATGAAGCGGAAGGCAAAGATAGTGATCTTTACACGAAGA
CAAGAGATAGAGAAAACAATCACACACGTCCCCCTCTACCCACTTTGCTA
CACAGACAGCATTGGCGGCATCACCGGCCCCAGGATGGCCGCGCCCCGAC
GCACAATACGAAGACCTGTCTTGAGCTCGTTTGCAAGCATGACTGTTCTC
ATGGCCGCTGCGGTCGCACTGGGCATGCAGGTAGCCCACGCCACCATCAC
CATGGCAAGAAAGAGTAGCAGCAGTATGGACAGGATAGGAGTTAGACAAT
GCTCGTGTTGGCTGTCCGGCTTTGTGGTGAGGAGCGGCCGCAGCCTCAGC
CACACCCCACGTGTATTCCGCACCAACACTGTCCGCCTAAGACAAGGTCA
GTAAGGGGGGAGAGGACAAAACATGCCAGTGCGCAAAAAGTGCTCGCCTA
TGCAATGATTATGAATAACAATTATCCCTGTCTGTAACAAGACCAAAAGT
CTATGAGGATGATCCAATTTAAGGTAACCGAATGAGCCAAGGCACCACCC
CTAACCAACCCTCCTCAACGCACGCAACAATTTTTGTCCACTCCCTTCTT
CTCATTCACCGCTCTACATACGCCAATATACCACGCAGTCATACAACAAT
GGTCCTCGTCCGATGGAGCCACTCCCAGCTCCAGCACCACAACCGCTCCC
TCCTCAGCCACCAGCCCTGCGGCTTTCTCCGACGAGCCCACCCGCCCCCC
CACCCTCCCCTCCCAAGAGTTCAAACCAAAGCAATCCCTCGGTCAAAATT
TTCTGTCTGATCAAAATTATGTTTTGAAAATCGTGACTGCCTTGGTAGAT
TCTAGCCCGGGAGGGAGACGAGTGGTGGAATTGGGGCCTGGTCCTGGTGC
CTTGACAAGGGTGCTGCATCGACGGTACCCCGAAATGCTAGCCGTGGAAA
TCGACTCTCGCGCCATAGCTGTTTTGAACGAGGCCTTGCCAGACTTGTGT
GTGGTACAATCGGATGTTCTACAAGTGGATTGGACAGTTTTGGCGGAGCT
GAGGGGAGGGCCCTTGTCGGTGATAGGAAATTTACCTTACCACATCACGA
GCCAAATTTTGTTTTGTTTGCTGGACAACCATCGAGCGGTGCGTCAAGCC
GTGGTCACCATGCAGCTGGAGGTAGCACAGCGGATTACGGCACCCACTCG
ATGCAAAGACTATGGGATATTGTCGGTGCTTTTCCAGTTGTACACAAAGC
CGCGAATTAATTTCAAGCTTCCCCCCACAGTCTTCTATCCCCAGCCCAAA
GTGACCTCAGCGTTGGTGACGCTCGATTTCTTGCAGCCTGCCGAGGGCAA
GCCGCTTTTCGACGTGGACCCCGCGGCACTAAAACAGGTGTTAAATTTAA
GTTTCCAACAGCGGCGCAAGATGTTGCGACAGAGCTTGAAGGGCTTGCTT
GCTGCCCGGGATGTCACATTAGATGAGGAGTGGGCAACGAAGCGACCCGA
GGAATTAGAGCCCGCCCACTTTGTTAAATTGACCAAATTATTATTTGGCC
CTGCCACAGCAGGTAGCAATAACAGCCGCTTCAGCGCCGCGAATCAGGGT
CAGAGGGGGCAGACTCGCGTGTGGCGACGAGCGCGCCATGGGGGCTTGGA
GGAGGACGAGAAGGAGGAGGAGGAGGAGGAGGAGTAGAAGTAGTAGTAGT
AGTAGTAGTAGT
back to top

Coding sequence (CDS) from alignment at chr7:522963..524974-

>NO07G01740.1 ID=NO07G01740.1|Name=NO07G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr7:522963..524974- (Nannochloropsis oceanica)
ATGGGTATGAAGCGGAAGGCAAAGATAGTGATCTTTACACGAAGACAAGA
GATAGAGAAAACAATCACACACGTCCCCCTCTACCCACTTTGCTACACAG
ACAGCATTGGCGGCATCACCGGCCCCAGGATGGCCGCGCCCCGACGCACA
ATACGAAGACCTGTCTTGAGCTCGTTTGCAAGCATGACTGTTCTCATGGC
CGCTGCGGTCGCACTGGGCATGCAGGTAGCCCACGCCACCATCACCATGG
CAAGAAAGAGTAGCAGCAGTATGGACAGGATAGGAGTTAGACAATGCTCG
TGTTGGCTGTCCGGCTTTGTGGTGAGGAGCGGCCGCAGCCTCAGCCACAC
CCCACGTGTATTCCGCACCAACACTGTCCGCCTAAGACAAGTCATACAAC
AATGGTCCTCGTCCGATGGAGCCACTCCCAGCTCCAGCACCACAACCGCT
CCCTCCTCAGCCACCAGCCCTGCGGCTTTCTCCGACGAGCCCACCCGCCC
CCCCACCCTCCCCTCCCAAGAGTTCAAACCAAAGCAATCCCTCGGTCAAA
ATTTTCTGTCTGATCAAAATTATGTTTTGAAAATCGTGACTGCCTTGGTA
GATTCTAGCCCGGGAGGGAGACGAGTGGTGGAATTGGGGCCTGGTCCTGG
TGCCTTGACAAGGGTGCTGCATCGACGGTACCCCGAAATGCTAGCCGTGG
AAATCGACTCTCGCGCCATAGCTGTTTTGAACGAGGCCTTGCCAGACTTG
TGTGTGGTACAATCGGATGTTCTACAAGTGGATTGGACAGTTTTGGCGGA
GCTGAGGGGAGGGCCCTTGTCGGTGATAGGAAATTTACCTTACCACATCA
CGAGCCAAATTTTGTTTTGTTTGCTGGACAACCATCGAGCGGTGCGTCAA
GCCGTGGTCACCATGCAGCTGGAGGTAGCACAGCGGATTACGGCACCCAC
TCGATGCAAAGACTATGGGATATTGTCGGTGCTTTTCCAGTTGTACACAA
AGCCGCGAATTAATTTCAAGCTTCCCCCCACAGTCTTCTATCCCCAGCCC
AAAGTGACCTCAGCGTTGGTGACGCTCGATTTCTTGCAGCCTGCCGAGGG
CAAGCCGCTTTTCGACGTGGACCCCGCGGCACTAAAACAGGTGTTAAATT
TAAGTTTCCAACAGCGGCGCAAGATGTTGCGACAGAGCTTGAAGGGCTTG
CTTGCTGCCCGGGATGTCACATTAGATGAGGAGTGGGCAACGAAGCGACC
CGAGGAATTAGAGCCCGCCCACTTTGTTAAATTGACCAAATTATTATTTG
GCCCTGCCACAGCAGGTAGCAATAACAGCCGCTTCAGCGCCGCGAATCAG
GGTCAGAGGGGGCAGACTCGCGTGTGGCGACGAGCGCGCCATGGGGGCTT
GGAGGAGGACGAGAAGGAGGAGGAGGAGGAGGAGGAGTAG
back to top
Synonyms
Publications