NO07G01730.1, NO07G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01730.1
Unique NameNO07G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1067
Alignment locationchr7:521068..522134 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:521068..522134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01730.1 vs.
Match: EWM21429.1 (hypothetical protein Naga_100147g10 [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 3.800e-22
Identity = 67/139 (48.20%), Postives = 86/139 (61.87%), Query Frame = 0 
Query:    6 LPALLVLALCATNAAAAGYIKTFNASNYALTTYDAAAEKPLRVRPNTVYTIDKFLD-EDFHLV-IQCPQPKNNRMRKKGFITYLSYYQGIDESAVEVYEDGSDI--AQAEMYSIID-AGYGSLLVLFCNNGKLTLNYNY 140
            L  LL+L LC T  AA GY++T +A+ Y    ++A+   PLRV+P  VY      D +D H V IQCPQPK  + +KKGF+TYLSY     ++ V VY+ G D    Q  MYS  D  GYGSLL LFC+NG LT+ +NY
Sbjct:   65 LATLLLLGLCTTQVAARGYMRTMDAAAYVRDDFNASVAMPLRVKPGRVYEFSTPADTDDDHFVNIQCPQPK--KTQKKGFLTYLSYVNSFPDTPVYVYQLGDDYNDNQGAMYSARDEPGYGSLLPLFCSNGVLTVAFNY 201
The following BLAST results are available for this feature:
BLAST of NO07G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21429.13.800e-2248.20hypothetical protein Naga_100147g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01730NO07G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01730.1NO07G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01730.1.cds1NO07G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01730.1 ID=NO07G01730.1|Name=NO07G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp
GTTTCTAAAAAAACTGTCGTGTGCTTTTCGTTTGGTTATTTGGTTCCCTG
TCAATCTGATAGCAAATTGGTTGCCTCTTTTGGTTATATTCCCTTTGAAC
ACCACACAGACACAGTCTCACAGACACAGGTGTCAAAGACACCCCCGGAC
ACTCACTGGGTGGCCAGATCCATCGATACTCACACACATCCACGCCCATA
CGGATGTTCCGCATGATCTTTCCCCTCCCCCCTAATCCATCCGCCTTCAC
ACAATCACTATCTATGCTATTATCTCTCCTCCTTCACATCACACGTATTT
CGTACAGAGGCAACACACAACCAAGTCAGCAATGTTCATCAAGAAGCTGC
CTGCGCTCCTTGTGCTTGCTTTATGCGCCACCAATGCCGCTGCCGCCGGT
TACATCAAGACGTTTAACGCCTCCAACTACGCCCTGACAACATATGATGC
CGCCGCTGAAAAGCCCCTCCGGGTGAGGCCCAACACCGTGTACACGATCG
ACAAGTTCCTCGACGAAGACTTCCACCTCGTTATTCAGTGTCCTCAGCCC
AAGAATAACCGCATGAGGAAGAAGGGTTTCATCACCTATTTGAGCTATTA
CCAAGGCATTGACGAAAGTGCCGTCGAGGTCTATGAGGACGGCAGCGACA
TCGCACAAGCTGAGATGTATAGCATCATTGATGCTGGGTACGGGTCTTTG
CTTGTACTGTTCTGCAACAATGGCAAGCTTACCTTGAACTACAACTATGC
CGCCTAATGAGAGAACGGGATGCTGAATAATATAATTGAATCAACGGACC
AGCTTCTCATTCCAATCTCCATGTTTTTGCTGTTATGTGTCGTGTTGTGT
TGCGGGGATGTGAGTGTCTTATGTGTCGTGTTGTGTTGCGGGGATGTGTG
TGTCTCTCGCGGCGTCCTGTTAATTCTATTTCTGCGCGGGAATGTGAGCA
TATAATTCAGGGACCGGTGAGAGCCCGGCAACCCCATCAGAAGCCTTGAT
GGATGAACAATCAGATTGTAACGAGTGGCGAAGTTGTGAAAGAATTAAAA
AGAAGGTGCCGAAGATG
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protein sequence of NO07G01730.1

>NO07G01730.1-protein ID=NO07G01730.1-protein|Name=NO07G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MFIKKLPALLVLALCATNAAAAGYIKTFNASNYALTTYDAAAEKPLRVRP
NTVYTIDKFLDEDFHLVIQCPQPKNNRMRKKGFITYLSYYQGIDESAVEV
YEDGSDIAQAEMYSIIDAGYGSLLVLFCNNGKLTLNYNYAA*
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mRNA from alignment at chr7:521068..522134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01730.1 ID=NO07G01730.1|Name=NO07G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1067bp|location=Sequence derived from alignment at chr7:521068..522134- (Nannochloropsis oceanica)
GTTTCTAAAAAAACTGTCGTGTGCTTTTCGTTTGGTTATTTGGTTCCCTG
TCAATCTGATAGCAAATTGGTTGCCTCTTTTGGTTATATTCCCTTTGAAC
ACCACACAGACACAGTCTCACAGACACAGGTGTCAAAGACACCCCCGGAC
ACTCACTGGGTGGCCAGATCCATCGATACTCACACACATCCACGCCCATA
CGGATGTTCCGCATGATCTTTCCCCTCCCCCCTAATCCATCCGCCTTCAC
ACAATCACTATCTATGCTATTATCTCTCCTCCTTCACATCACACGTATTT
CGTACAGAGGCAACACACAACCAAGTCAGCAATGTTCATCAAGAAGCTGC
CTGCGCTCCTTGTGCTTGCTTTATGCGCCACCAATGCCGCTGCCGCCGGT
TACATCAAGACGTTTAACGCCTCCAACTACGCCCTGACAACATATGATGC
CGCCGCTGAAAAGCCCCTCCGGGTGAGGCCCAACACCGTGTACACGATCG
ACAAGTTCCTCGACGAAGACTTCCACCTCGTTATTCAGTGTCCTCAGCCC
AAGAATAACCGCATGAGGAAGAAGGGTTTCATCACCTATTTGAGCTATTA
CCAAGGCATTGACGAAAGTGCCGTCGAGGTCTATGAGGACGGCAGCGACA
TCGCACAAGCTGAGATGTATAGCATCATTGATGCTGGGTACGGGTCTTTG
CTTGTACTGTTCTGCAACAATGGCAAGCTTACCTTGAACTACAACTATGC
CGCCTAATGAGAGAACGGGATGCTGAATAATATAATTGAATCAACGGACC
AGCTTCTCATTCCAATCTCCATGTTTTTGCTGTTATGTGTCGTGTTGTGT
TGCGGGGATGTGAGTGTCTTATGTGTCGTGTTGTGTTGCGGGGATGTGTG
TGTCTCTCGCGGCGTCCTGTTAATTCTATTTCTGCGCGGGAATGTGAGCA
TATAATTCAGGGACCGGTGAGAGCCCGGCAACCCCATCAGAAGCCTTGAT
GGATGAACAATCAGATTGTAACGAGTGGCGAAGTTGTGAAAGAATTAAAA
AGAAGGTGCCGAAGATG
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Coding sequence (CDS) from alignment at chr7:521068..522134-

>NO07G01730.1 ID=NO07G01730.1|Name=NO07G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr7:521068..522134- (Nannochloropsis oceanica)
ATGTTCATCAAGAAGCTGCCTGCGCTCCTTGTGCTTGCTTTATGCGCCAC
CAATGCCGCTGCCGCCGGTTACATCAAGACGTTTAACGCCTCCAACTACG
CCCTGACAACATATGATGCCGCCGCTGAAAAGCCCCTCCGGGTGAGGCCC
AACACCGTGTACACGATCGACAAGTTCCTCGACGAAGACTTCCACCTCGT
TATTCAGTGTCCTCAGCCCAAGAATAACCGCATGAGGAAGAAGGGTTTCA
TCACCTATTTGAGCTATTACCAAGGCATTGACGAAAGTGCCGTCGAGGTC
TATGAGGACGGCAGCGACATCGCACAAGCTGAGATGTATAGCATCATTGA
TGCTGGGTACGGGTCTTTGCTTGTACTGTTCTGCAACAATGGCAAGCTTA
CCTTGAACTACAACTATGCCGCCTAA
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Synonyms
Publications