NO07G01700.1, NO07G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01700.1
Unique NameNO07G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr7:513107..514168 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:513107..514168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G01700.1 vs.
Match: EWM27148.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 478.0 bits (1229), Expect = 2.500e-131
Identity = 244/313 (77.96%), Postives = 277/313 (88.50%), Query Frame = 0 
Query:   41 PSHSKPSSTRSRHRGGVQSTQMIANFLGGGGEPKGIPRSIKDGINGLRFAMQRVLRDRKSRVEVNLPRGTPLGVEGPGAGSSADDKYEKADRELARLTVELFKPIIENTVVIFSQGRQARRASSIWGTEVVKTMAWDEMTSTAIKRKNKKTKKGAGGFGGEGRGDNSAMSLPPGTEVCIVVAPGPKELSAVKRLSDSVGFDTLIIVLNTPLEQAAPYLPKDEATALLSAFETVFFLNVLNDPSVKTLDNMLLFKSYPGEWLIAQKGALGPPQVLASKAERFTEEERLVALRKGAENNAKPLMEKLTVGLFGGG 354
            P +    S+RS HR  +  + MIANFLGGGGEP+GIPRSIKDGINGLRFAMQR LRDRKSR E+NLPRGTPLGVEGPGAGS+ DDKYEK+DRELARLTVELFKPII+NTVVIFSQGRQARRA+SIWGT +VKTMA DEMTS+AIKRKNKK KKG GGFG    G     +LPPGTEVCIVVAPGPKELSAV+RLS+S+GFDTL+I+LNTPLE+A+P+LPKDEA ALLS FE VFFLNVLND +VKTLDN+LL++SYPGEW IAQKGALGPP++LASK ERFT+EE+L+ALR+GAENNAKPL+EKLT  L+G G
Sbjct:   28 PLNQVSQSSRS-HRRRICPSYMIANFLGGGGEPQGIPRSIKDGINGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAASIWGTALVKTMALDEMTSSAIKRKNKKAKKG-GGFGA-SEGGGEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALREGAENNAKPLLEKLTSSLWGSG 337
The following BLAST results are available for this feature:
BLAST of NO07G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27148.12.500e-13177.96protein of unknown function DUF1995 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01700NO07G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01700.1NO07G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01700.1.cds1NO07G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01700.1 ID=NO07G01700.1|Name=NO07G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGGCCTACTCAAGGCCACTCCTGCTCCTCCTACCCACCCTCGCGCTAAT
CCTCGTCCTTCTCGCCGTCCCCGTCCCCACCTCCGCCTTTCAAATGGGGC
GGCCAGGGCTGCTTCCATGCCCCTCTCATTCCAAACCCTCTAGCACTCGC
AGCAGGCATCGAGGAGGAGTTCAATCTACACAAATGATTGCGAATTTCCT
GGGTGGCGGTGGGGAACCTAAGGGCATCCCTCGTTCTATCAAAGACGGTA
TCAATGGTCTCCGTTTCGCCATGCAGCGTGTCCTTCGCGATAGAAAGTCG
CGGGTAGAAGTGAACTTGCCTCGAGGCACACCGCTTGGAGTCGAAGGTCC
TGGGGCAGGCTCGTCTGCTGACGACAAATATGAGAAAGCTGATCGAGAGC
TGGCACGATTGACTGTGGAGTTGTTTAAACCCATCATTGAGAATACTGTT
GTCATATTCTCGCAAGGCCGGCAAGCACGCCGTGCCTCAAGTATCTGGGG
TACGGAAGTAGTCAAAACCATGGCTTGGGACGAAATGACCTCCACGGCAA
TCAAACGAAAAAATAAAAAGACCAAAAAAGGCGCAGGGGGCTTTGGTGGC
GAGGGGAGAGGAGATAACAGTGCCATGTCATTACCACCAGGCACGGAAGT
GTGCATTGTCGTGGCACCCGGGCCGAAAGAGTTGAGTGCAGTTAAGAGGC
TAAGTGATAGTGTGGGTTTTGACACCTTGATCATTGTCCTTAATACACCG
TTAGAACAAGCTGCACCGTATCTACCCAAGGATGAGGCCACGGCCCTTCT
TTCTGCATTTGAGACTGTCTTCTTCTTAAATGTATTGAATGACCCCTCCG
TCAAAACATTGGACAACATGCTGCTTTTTAAAAGCTACCCGGGTGAGTGG
TTGATTGCACAAAAAGGAGCGCTGGGACCACCGCAGGTACTGGCTTCGAA
AGCTGAAAGGTTTACAGAGGAGGAGAGATTAGTGGCTTTGCGGAAGGGGG
CGGAGAACAACGCGAAGCCCCTAATGGAGAAGTTGACGGTGGGATTGTTT
GGTGGTGGGTGA
back to top

protein sequence of NO07G01700.1

>NO07G01700.1-protein ID=NO07G01700.1-protein|Name=NO07G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MAYSRPLLLLLPTLALILVLLAVPVPTSAFQMGRPGLLPCPSHSKPSSTR
SRHRGGVQSTQMIANFLGGGGEPKGIPRSIKDGINGLRFAMQRVLRDRKS
RVEVNLPRGTPLGVEGPGAGSSADDKYEKADRELARLTVELFKPIIENTV
VIFSQGRQARRASSIWGTEVVKTMAWDEMTSTAIKRKNKKTKKGAGGFGG
EGRGDNSAMSLPPGTEVCIVVAPGPKELSAVKRLSDSVGFDTLIIVLNTP
LEQAAPYLPKDEATALLSAFETVFFLNVLNDPSVKTLDNMLLFKSYPGEW
LIAQKGALGPPQVLASKAERFTEEERLVALRKGAENNAKPLMEKLTVGLF
GGG*
back to top

mRNA from alignment at chr7:513107..514168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01700.1 ID=NO07G01700.1|Name=NO07G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at chr7:513107..514168+ (Nannochloropsis oceanica)
ATGGCCTACTCAAGGCCACTCCTGCTCCTCCTACCCACCCTCGCGCTAAT
CCTCGTCCTTCTCGCCGTCCCCGTCCCCACCTCCGCCTTTCAAATGGGGC
GGCCAGGGCTGCTTCCATGCCCCTCTCATTCCAAACCCTCTAGCACTCGC
AGCAGGCATCGAGGAGGAGTTCAATCTACACAAATGATTGCGAATTTCCT
GGGTGGCGGTGGGGAACCTAAGGGCATCCCTCGTTCTATCAAAGACGGTA
TCAATGGTCTCCGTTTCGCCATGCAGCGTGTCCTTCGCGATAGAAAGTCG
CGGGTAGAAGTGAACTTGCCTCGAGGCACACCGCTTGGAGTCGAAGGTCC
TGGGGCAGGCTCGTCTGCTGACGACAAATATGAGAAAGCTGATCGAGAGC
TGGCACGATTGACTGTGGAGTTGTTTAAACCCATCATTGAGAATACTGTT
GTCATATTCTCGCAAGGCCGGCAAGCACGCCGTGCCTCAAGTATCTGGGG
TACGGAAGTAGTCAAAACCATGGCTTGGGACGAAATGACCTCCACGGCAA
TCAAACGAAAAAATAAAAAGACCAAAAAAGGCGCAGGGGGCTTTGGTGGC
GAGGGGAGAGGAGATAACAGTGCCATGTCATTACCACCAGGCACGGAAGT
GTGCATTGTCGTGGCACCCGGGCCGAAAGAGTTGAGTGCAGTTAAGAGGC
TAAGTGATAGTGTGGGTTTTGACACCTTGATCATTGTCCTTAATACACCG
TTAGAACAAGCTGCACCGTATCTACCCAAGGATGAGGCCACGGCCCTTCT
TTCTGCATTTGAGACTGTCTTCTTCTTAAATGTATTGAATGACCCCTCCG
TCAAAACATTGGACAACATGCTGCTTTTTAAAAGCTACCCGGGTGAGTGG
TTGATTGCACAAAAAGGAGCGCTGGGACCACCGCAGGTACTGGCTTCGAA
AGCTGAAAGGTTTACAGAGGAGGAGAGATTAGTGGCTTTGCGGAAGGGGG
CGGAGAACAACGCGAAGCCCCTAATGGAGAAGTTGACGGTGGGATTGTTT
GGTGGTGGGTGA
back to top

Coding sequence (CDS) from alignment at chr7:513107..514168+

>NO07G01700.1 ID=NO07G01700.1|Name=NO07G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr7:513107..514168+ (Nannochloropsis oceanica)
ATGGCCTACTCAAGGCCACTCCTGCTCCTCCTACCCACCCTCGCGCTAAT
CCTCGTCCTTCTCGCCGTCCCCGTCCCCACCTCCGCCTTTCAAATGGGGC
GGCCAGGGCTGCTTCCATGCCCCTCTCATTCCAAACCCTCTAGCACTCGC
AGCAGGCATCGAGGAGGAGTTCAATCTACACAAATGATTGCGAATTTCCT
GGGTGGCGGTGGGGAACCTAAGGGCATCCCTCGTTCTATCAAAGACGGTA
TCAATGGTCTCCGTTTCGCCATGCAGCGTGTCCTTCGCGATAGAAAGTCG
CGGGTAGAAGTGAACTTGCCTCGAGGCACACCGCTTGGAGTCGAAGGTCC
TGGGGCAGGCTCGTCTGCTGACGACAAATATGAGAAAGCTGATCGAGAGC
TGGCACGATTGACTGTGGAGTTGTTTAAACCCATCATTGAGAATACTGTT
GTCATATTCTCGCAAGGCCGGCAAGCACGCCGTGCCTCAAGTATCTGGGG
TACGGAAGTAGTCAAAACCATGGCTTGGGACGAAATGACCTCCACGGCAA
TCAAACGAAAAAATAAAAAGACCAAAAAAGGCGCAGGGGGCTTTGGTGGC
GAGGGGAGAGGAGATAACAGTGCCATGTCATTACCACCAGGCACGGAAGT
GTGCATTGTCGTGGCACCCGGGCCGAAAGAGTTGAGTGCAGTTAAGAGGC
TAAGTGATAGTGTGGGTTTTGACACCTTGATCATTGTCCTTAATACACCG
TTAGAACAAGCTGCACCGTATCTACCCAAGGATGAGGCCACGGCCCTTCT
TTCTGCATTTGAGACTGTCTTCTTCTTAAATGTATTGAATGACCCCTCCG
TCAAAACATTGGACAACATGCTGCTTTTTAAAAGCTACCCGGGTGAGTGG
TTGATTGCACAAAAAGGAGCGCTGGGACCACCGCAGGTACTGGCTTCGAA
AGCTGAAAGGTTTACAGAGGAGGAGAGATTAGTGGCTTTGCGGAAGGGGG
CGGAGAACAACGCGAAGCCCCTAATGGAGAAGTTGACGGTGGGATTGTTT
GGTGGTGGGTGA
back to top
Synonyms
Publications