NO07G01670.1, NO07G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01670.1
Unique NameNO07G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2774
Alignment locationchr7:506118..509180 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:506118..509180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01670.1 vs.
Match: EWM27180.1 (uracil-dna glycosylase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 1.100e-80
Identity = 166/270 (61.48%), Postives = 186/270 (68.89%), Query Frame = 0 
Query:   40 AFTMVSVKRRKAPVASALIAGMHKKAPATAAFVVRTTATFAQSSGTDSGTSSSTSISTTTSTSSCKSSSASGGGLLEKFGSPEIPLRLILVGHNPSAAAWRDGHYYSNPSNRMWRLLSGAGIIPANYTALDDDKCPATCGIGFTDLGHGIPGTDSSQFRPKVLHMWRESLYQRLRGHSDRAGAPPKIVAFTGKRQFKELFYDSPAYKKKGLISYGLQTMRPEGFPFTVEETQLFVLTSSSGAAAMSNEAREAPYKELAVLLQQFPWGAPP 310
            AF MV V RRK+            +A  T A   R     A         + S   S T +  +C       GGL EK+G PE PLRL+LVGHNPSAAAWRDGHYYSNPSNRMW LL    IIP  YTA DDD+CP+TCGIGFTDLG+G PGTDSS F+  VLH WR SLYQRL  H+ RAGAPPKIVAFTGKRQF+ELF+DS AYK    ISYGLQ+ RP+GFPF  +ET+LFVLTSSSGAAAMSN ARE PY+ELA LL+Q PW  PP
Sbjct:  151 AFIMVGVARRKS------------QALTTTALAFRERRGLA---------TISLHKSKTPAHENC-------GGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSIS-ISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPP 391
The following BLAST results are available for this feature:
BLAST of NO07G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27180.11.100e-8061.48uracil-dna glycosylase superfamily [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01670NO07G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01670.1NO07G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01670.1.cds1NO07G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01670.1.cds2NO07G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01670.1 ID=NO07G01670.1|Name=NO07G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2774bp
CAAAGCACCTCCAATGGTGGCTTTCCTCCGTTCTTGACGCCCTGGGTACC
TTGCGTCGTGTTCGGCCCATGTTTCTTGTTTGTCTCTTGACATAAGCCAT
CCCTTCCCCCATCTTCCAGTGTAAGATATGACCACCCGTGGAAGGCAAGG
CGGACAAAGTATGGTCATCTCATGAAGCTCTTGCTGGGTGGTCACCGTGA
TACGTCATCAATGGGTTCATGGTGGGGAGAGACAGGCAGGCAGTAGGAAG
AGGAGAAGTAGGAGGAGGCCACGTGCGGAAATAAGCATGATCTACTTTGG
ATCGGTCATTTGAGTGAATATTGTACTAAACGTTGAAGCCCAAGGGGTAA
TACCGCACAGAAAGCTACAAAAACTGGTGCTTGTCGAGCAAATGCGTGTA
CTTTGGCATGCAAGCAACCACACACAGACAAAGCAGTTTTCAAGCACTTT
TTTAGATAAATTTACCATTTTTTCCAACAAAATCAAAAACAAATGTGGGT
AACAGTTGCTTGCTTTTTCGGTATTCGAATGATACTTCCAACCAGTCTTT
TATCGCCACCATCGGCATCGACTTCAAGATAAAATCCCCTCCTCCTGGGT
GACAAGAGACCCAAGCTCCAAATCTGGGACACGAACCCTAACCCTAACAG
AGGAAAAGAGTCCGTTTCGGAGGTTCGTTTTTGTTTCTTTTTGGAGACGT
CAACCACTTCCGGGGGCAAACCGTCCATAAAATTGTTATCTATTTGCCTT
CCCCGGTATTTGCCCATCGCGCTCTCGAGAGCGAGAGTAGGAGACCCCAC
CAACATCACCATGATGATCACCCACCCTCCTCTGCACGGCCCGCCACCTC
CCACATTCACCACACCCAATGTGGTCTGTAAGAAAGTGTTCGTGTACATG
CAATCACCACAGCCATCACCACAGCAACCCCAAGAACTGATGGAAGTATA
GAAGCCGGGCGGGTTCACGGAGTTTAAGTGCTCCGTGGGGTGGGCTTATT
TTGGTGCTCACATTAAGATAAAAAAAATGGTATAATCCATAGGCCGCGCA
TCCTCGTTATCGTCCTGCGCCGGCCTGTCTGCTGAGAGGTATACCATCTC
TTCTCCGGGGAAAGAATGGACGGCGTAGTCATTCGAGGCGTCGACGTCCT
TATTCTTGGGGTTGAGGATGGTGCGATCAATGAGAGTTTTCTTCGTTGTA
TTGCGCGCGTTATTGAAGTCCCCGTAGACGTGGTCGAGGAGCCTAATGGG
GTCGTAGTTCAACTCTGACGGAGGGTGCATGAAGGGGGGCAGGACGAACT
CCAGCTGGGGTGGAGGGAAAGGCGGGGTGGAATGGAGGGTGCCTACTGTC
GGAGTGGGTGGGGTTGCCCGTCCTTCCCCTACCGCGAGGAGGAGGTCCGC
CCGCATACCATTGGAGAAGATCCTAAGATCCTGGCCCGCGTCGTGCGCCG
CACGGATACGCACGTTTTCCTCCAGGGTAACGACGCGGACACGTTGCCAG
AGAGGGCTACAAATTGGGGAAGCGCGCACGGTAGCACTTTGGTCGTCGTC
TCGGACCACTAGGAGGATTTTACGTCGATCCCCCGGGGGTTATTCGGTAG
TGTTCACTTCAACACTTCAACTGACGCAGTCGCGTTTTCCATCACTCATT
GACCCAACCCAACCCACGAATCTATCGCACAGACAACGGTGTTTATGCCT
GCAACGCGTGGTGGCTGGTTCTTCTCTGCGTCTTGCGGCTGCCGTTCCGT
GTGTCTGAGCTGCCTCTTCATCGTCAACATTCTGCTTCCCAGAATTACGC
CAGGTGTCGCTGCTTTTACCATGGTTAGTGTCAAGCGCAGAAAGGCTCCT
GTCGCCTCCGCTCTTATAGCTGGCATGCACAAGAAGGCTCCTGCAACTGC
CGCATTCGTCGTGCGCACGACAGCAACATTCGCTCAGAGCAGCGGCACCG
ACAGTGGTACCAGCAGCAGCACCAGCATCAGCACCACCACCAGCACAAGC
AGCTGCAAAAGCAGCAGCGCTAGTGGTGGCGGCTTGCTCGAGAAATTTGG
GTCGCCTGAAATTCCCTTGCGTCTTATACTCGTTGGCCACAATCCATCGG
CCGCAGCGTGGCGCGACGGGCACTACTACTCAAATCCTTCCAATCGTATG
TGGCGTCTACTCAGCGGCGCAGGCATAATACCTGCAAATTATACGGCTCT
AGATGACGACAAATGCCCCGCAACCTGCGGCATAGGTTTCACGGATTTGG
GTCACGGTATACCAGGCACCGACTCTAGCCAGTTCAGACCCAAAGTTCTT
CACATGTGGAGGGAGAGTCTCTATCAACGCTTACGAGGACATTCTGACCG
TGCCGGAGCACCACCAAAAATTGTCGCTTTTACAGGGAAACGTCAATTTA
AAGAGCTCTTCTACGATTCACCTGCATACAAAAAAAAAGGTCTCATTTCG
TATGGTCTTCAAACCATGCGCCCGGAAGGCTTTCCATTCACGGTCGAGGA
GACGCAGTTGTTTGTGTTGACATCGTCGAGTGGAGCGGCGGCCATGAGTA
ATGAGGCTCGAGAGGCGCCGTACAAGGAATTGGCTGTTTTGCTGCAACAG
TTCCCATGGGGTGCCCCGCCGCCCACGAAGACAACAAGGGGGAGAAATTT
GAAATAAGGTGTGTGTAATCGTCGGGTGTATAGCTCGCGATGTTTCCAAA
ATTGAGTTGAATCCTAAAATGCAACACATAAAGTAATTGAAAAAGAAGAT
AGAACGGAGAAAATATAGATATGT
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protein sequence of NO07G01670.1

>NO07G01670.1-protein ID=NO07G01670.1-protein|Name=NO07G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MPATRGGWFFSASCGCRSVCLSCLFIVNILLPRITPGVAAFTMVSVKRRK
APVASALIAGMHKKAPATAAFVVRTTATFAQSSGTDSGTSSSTSISTTTS
TSSCKSSSASGGGLLEKFGSPEIPLRLILVGHNPSAAAWRDGHYYSNPSN
RMWRLLSGAGIIPANYTALDDDKCPATCGIGFTDLGHGIPGTDSSQFRPK
VLHMWRESLYQRLRGHSDRAGAPPKIVAFTGKRQFKELFYDSPAYKKKGL
ISYGLQTMRPEGFPFTVEETQLFVLTSSSGAAAMSNEAREAPYKELAVLL
QQFPWGAPPPTKTTRGRNLK*
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mRNA from alignment at chr7:506118..509180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01670.1 ID=NO07G01670.1|Name=NO07G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3063bp|location=Sequence derived from alignment at chr7:506118..509180+ (Nannochloropsis oceanica)
CAAAGCACCTCCAATGGTGGCTTTCCTCCGTTCTTGACGCCCTGGGTACC
TTGCGTCGTGTTCGGCCCATGTTTCTTGTTTGTCTCTTGACATAAGCCAT
CCCTTCCCCCATCTTCCAGTGTAAGATATGACCACCCGTGGAAGGCAAGG
CGGACAAAGTATGGTCATCTCATGAAGCTCTTGCTGGGTGGTCACCGTGA
TACGTCATCAATGGGTTCATGGTGGGGAGAGACAGGCAGGCAGTAGGAAG
AGGAGAAGTAGGAGGAGGCCACGTGCGGAAATAAGCATGATCTACTTTGG
ATCGGTCATTTGAGTGAATATTGTACTAAACGTTGAAGCCCAAGGGGTAA
TACCGCACAGAAAGCTACAAAAACTGGTGCTTGTCGAGCAAATGCGTGTA
CTTTGGCATGCAAGCAACCACACACAGACAAAGCAGTTTTCAAGCACTTT
TTTAGATAAATTTACCATTTTTTCCAACAAAATCAAAAACAAATGTGGGT
AACAGTTGCTTGCTTTTTCGGTATTCGAATGATACTTCCAACCAGTCTTT
TATCGCCACCATCGGGTACGTCTTTTGGGAGCCCGTACATATGCCACCTG
GAGCATTCTTGACAAACGGAAGAGGCAGCATGCACGCATGTCAATGAAGT
TGTCGCTTTGAAATATACCCCTCTTCCTTGCGCTTGCATTTTTTATTCCT
ACCCAAACACACAGCATCGACTTCAAGATAAAATCCCCTCCTCCTGGGTG
ACAAGAGACCCAAGCTCCAAATCTGGGACACGAACCCTAACCCTAACAGA
GGAAAAGAGTCCGTTTCGGAGGTTCGTTTTTGTTTCTTTTTGGAGACGTC
AACCACTTCCGGGGGCAAACCGTCCATAAAATTGTTATCTATTTGCCTTC
CCCGGTATTTGCCCATCGCGCTCTCGAGAGCGAGAGTAGGAGACCCCACC
AACATCACCATGATGATCACCCACCCTCCTCTGCACGGCCCGCCACCTCC
CACATTCACCACACCCAATGTGGTCTGTAAGAAAGTGTTCGTGTACATGC
AATCACCACAGCCATCACCACAGCAACCCCAAGAACTGATGGAAGTATAG
AAGCCGGGCGGGTTCACGGAGTTTAAGTGCTCCGTGGGGTGGGCTTATTT
TGGTGCTCACATTAAGATAAAAAAAATGGTATAATCCATAGGCCGCGCAT
CCTCGTTATCGTCCTGCGCCGGCCTGTCTGCTGAGAGGTATACCATCTCT
TCTCCGGGGAAAGAATGGACGGCGTAGTCATTCGAGGCGTCGACGTCCTT
ATTCTTGGGGTTGAGGATGGTGCGATCAATGAGAGTTTTCTTCGTTGTAT
TGCGCGCGTTATTGAAGTCCCCGTAGACGTGGTCGAGGAGCCTAATGGGG
TCGTAGTTCAACTCTGACGGAGGGTGCATGAAGGGGGGCAGGACGAACTC
CAGCTGGGGTGGAGGGAAAGGCGGGGTGGAATGGAGGGTGCCTACTGTCG
GAGTGGGTGGGGTTGCCCGTCCTTCCCCTACCGCGAGGAGGAGGTCCGCC
CGCATACCATTGGAGAAGATCCTAAGATCCTGGCCCGCGTCGTGCGCCGC
ACGGATACGCACGTTTTCCTCCAGGGTAACGACGCGGACACGTTGCCAGA
GAGGGCTACAAATTGGGGAAGCGCGCACGGTAGCACTTTGGTCGTCGTCT
CGGACCACTAGGAGGATTTTACGTCGATCCCCCGGGGGTTATTCGGTAGT
GTTCACTTCAACACTTCAACTGACGCAGTCGCGTTTTCCATCACTCATTG
ACCCAACCCAACCCACGAATCTATCGCACAGACAACGGTGTTTATGCCTG
CAACGCGTGGTGGCTGGTTCTTCTCTGCGTCTTGCGGCTGCCGTTCCGTG
TGTCTGAGCTGCCTCTTCATCGTCAACATTCTGCTTCCCAGAATTACGCC
AGGTGTCGCTGCTTTTACCATGGTTAGTGTCAAGCGCAGAAAGGCTCCTG
TCGCCTCCGCTCTTATAGCTGGCATGCACAAGAAGGCTCCTGCAACTGCC
GCATTCGTCGTGCGCACGACAGCAACATTCGCTCAGAGCAGCGGCACCGA
CAGTGGTACCAGCAGCAGCACCAGCATCAGCACCACCACCAGCACAAGCA
GCTGCAAAAGCAGCAGCGCTAGTGGTGGCGGCTTGCTCGAGAAATTTGGG
TCGCCTGAAATTCCCTTGCGTCTTATACTCGTTGGCCACAATCCATCGGC
CGCAGCGTGGCGCGACGGGCACTACTACTCAAATCCTTCCAATCGTATGT
GGCGTCTACTCAGCGGCGCAGGCATAATACCTGCAAATTATACGGCTCTA
GATGACGACAAATGCCCCGCAACCTGCGGCATAGGTTTCACGGATTTGGT
GCGTACTCTTTCTTGTGACATTATGGCTAGCGTTGCTAGTCGATTGCTCT
CTTATCCCCTCGCTCTTCTTCCTCCTTCCCCCCCGTTTTTTTTCGATCGA
CCCTAACGAGATCTTCTTTCATAATTCATAATTAAAAGGGTCACGGTATA
CCAGGCACCGACTCTAGCCAGTTCAGACCCAAAGTTCTTCACATGTGGAG
GGAGAGTCTCTATCAACGCTTACGAGGACATTCTGACCGTGCCGGAGCAC
CACCAAAAATTGTCGCTTTTACAGGGAAACGTCAATTTAAAGAGCTCTTC
TACGATTCACCTGCATACAAAAAAAAAGGTCTCATTTCGTATGGTCTTCA
AACCATGCGCCCGGAAGGCTTTCCATTCACGGTCGAGGAGACGCAGTTGT
TTGTGTTGACATCGTCGAGTGGAGCGGCGGCCATGAGTAATGAGGCTCGA
GAGGCGCCGTACAAGGAATTGGCTGTTTTGCTGCAACAGTTCCCATGGGG
TGCCCCGCCGCCCACGAAGACAACAAGGGGGAGAAATTTGAAATAAGGTG
TGTGTAATCGTCGGGTGTATAGCTCGCGATGTTTCCAAAATTGAGTTGAA
TCCTAAAATGCAACACATAAAGTAATTGAAAAAGAAGATAGAACGGAGAA
AATATAGATATGT
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Coding sequence (CDS) from alignment at chr7:506118..509180+

>NO07G01670.1 ID=NO07G01670.1|Name=NO07G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr7:506118..509180+ (Nannochloropsis oceanica)
ATGCCTGCAACGCGTGGTGGCTGGTTCTTCTCTGCGTCTTGCGGCTGCCG
TTCCGTGTGTCTGAGCTGCCTCTTCATCGTCAACATTCTGCTTCCCAGAA
TTACGCCAGGTGTCGCTGCTTTTACCATGGTTAGTGTCAAGCGCAGAAAG
GCTCCTGTCGCCTCCGCTCTTATAGCTGGCATGCACAAGAAGGCTCCTGC
AACTGCCGCATTCGTCGTGCGCACGACAGCAACATTCGCTCAGAGCAGCG
GCACCGACAGTGGTACCAGCAGCAGCACCAGCATCAGCACCACCACCAGC
ACAAGCAGCTGCAAAAGCAGCAGCGCTAGTGGTGGCGGCTTGCTCGAGAA
ATTTGGGTCGCCTGAAATTCCCTTGCGTCTTATACTCGTTGGCCACAATC
CATCGGCCGCAGCGTGGCGCGACGGGCACTACTACTCAAATCCTTCCAAT
CGTATGTGGCGTCTACTCAGCGGCGCAGGCATAATACCTGCAAATTATAC
GGCTCTAGATGACGACAAATGCCCCGCAACCTGCGGCATAGGTTTCACGG
ATTTGGGTCACGGTATACCAGGCACCGACTCTAGCCAGTTCAGACCCAAA
GTTCTTCACATGTGGAGGGAGAGTCTCTATCAACGCTTACGAGGACATTC
TGACCGTGCCGGAGCACCACCAAAAATTGTCGCTTTTACAGGGAAACGTC
AATTTAAAGAGCTCTTCTACGATTCACCTGCATACAAAAAAAAAGGTCTC
ATTTCGTATGGTCTTCAAACCATGCGCCCGGAAGGCTTTCCATTCACGGT
CGAGGAGACGCAGTTGTTTGTGTTGACATCGTCGAGTGGAGCGGCGGCCA
TGAGTAATGAGGCTCGAGAGGCGCCGTACAAGGAATTGGCTGTTTTGCTG
CAACAGTTCCCATGGGGTGCCCCGCCGCCCACGAAGACAACAAGGGGGAG
AAATTTGAAATAA
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Synonyms
Publications