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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:503374..506073 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01660.1 vs.
Match: EWM27205.1 (nucleoredoxin [Nannochloropsis gaditana]) HSP 1 Score: 925.6 bits (2391), Expect = 8.200e-266 Identity = 496/640 (77.50%), Postives = 546/640 (85.31%), Query Frame = 0
Query: 1 MKTTSLVLFLGAAVGAVQASGPSFSPATLFNRFSGWGEEEYEYEEEEEGPGLAALALKALVGAGVAAAGGAGVSFARRAIKAKQLQHESAPSRRSSMAGRSSTTSGGSSSTSSFVESGIKGGKSDAKAPRGATTTAPPPPTAAGSASGEQEEVEEPEEVFEVEPVQELDESTLTAAQKEHPMAKLLGPKLVKYDPKDRKLVEVATADVLDGKVTSLFFHAHQVEQMLEKMKAGKVLPGIKDVYAEQQEKGNNFEVVFVPLPDGQEGRFQAYLKDMPWYAVPFNSTEKLRDAYKTFKIQNLPAAVIVDEQADVINEKGFTYMLIDKDGFPWRPKTLTQMMGSTFITNTGKTVPATEVAKKKVLALYFSANWCKPCREFTPKLVEAYERYRAEGKDLEVVFVSMDETEEKFNEYFAEMPWLSLPYTDKTTRSLLMTELEVRGLPSLVLLDETREVITTKGRDFVLKDPEGRNFPWYPQPLNEISYSFDGIAQKPSIVLFMEGAGTVDQTKMIASMQAVAEEYTEKNKLAPEEAAHRFNFFYAQEISTFSKALRSIAGLEQLNPKDKFLKAKAQANKPRLVLLDIAKEVCHVTPEEGAGDVDEAAIRAMLEARVEGTLPMESFRQPEPESADAAAAAAAAAAG 641
M+T SL L LG + AV+AS S SP FNRFS + E EYEEEEEGPGL L LKALVGA VAA GG GVSFARRAIKAKQ Q S P ++ S SST SST SFVESGIKGGKSD K RG TT APP T A SGE+ E +EPEEVF+VEPV ELDES L+ QKEHP AKLLGPKLVKYD K KLVEVATADVLDGKVTSLFFHA QVEQMLEKMKAGKVLPG+K+VYAEQ+ KGNNFEVVF+ LPDGQEGRFQAY+KDMPWYA+PFN+TE+LRDAYK FKIQNLPAAV+VDEQA V+NEKGFTYMLIDK+GFPW PKTL+QM+GSTF++ ++VPA EVAKKKVLALYFSANWCKPC+EFTPKLVEAYE+ RA+GKDLEVVFVSMDETEEKF EYFA+MPWLSLPY DKT RSLLMTELEV+GLP+LVLLDE REVIT+KGRDFVLKDPEG FPWYPQPLNEISYSFDGIAQKPS+VLFMEGA Q KM+A+MQAVAEE+T KNKLAPE+AAHRFNF+YAQEISTFSKALRSIAGLEQLNPKDKFLK+KA+ANKPRLVLLDI KEVCHV+P E AG V+E IR +L+ARVEGTLPME+FRQPEPE +AAA+A+A AG
Sbjct: 1 MRTLSLYLLLGIILHAVEASRFSLSPPAFFNRFSDF---EEEYEEEEEGPGLGGLPLKALVGASVAAVGGVGVSFARRAIKAKQ-QRVSTPKQQRSHLPSSSTV---GSSTPSFVESGIKGGKSDPKIARGTTTMAPPSSTEA-DGSGEEAE-KEPEEVFDVEPVVELDESKLSEGQKEHPYAKLLGPKLVKYDSKQGKLVEVATADVLDGKVTSLFFHAQQVEQMLEKMKAGKVLPGLKEVYAEQRAKGNNFEVVFMSLPDGQEGRFQAYMKDMPWYAMPFNATERLRDAYKAFKIQNLPAAVVVDEQAQVLNEKGFTYMLIDKEGFPWHPKTLSQMLGSTFLSK-DRSVPAAEVAKKKVLALYFSANWCKPCQEFTPKLVEAYEKVRAQGKDLEVVFVSMDETEEKFKEYFAKMPWLSLPYEDKTARSLLMTELEVKGLPTLVLLDEEREVITSKGRDFVLKDPEGAKFPWYPQPLNEISYSFDGIAQKPSLVLFMEGASADAQAKMVAAMQAVAEEFTAKNKLAPEDAAHRFNFYYAQEISTFSKALRSIAGLEQLNPKDKFLKSKAEANKPRLVLLDIGKEVCHVSPAEDAGPVEETTIRELLQARVEGTLPMETFRQPEPE--EAAASASAKGAG 628
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01660.1 ID=NO07G01660.1|Name=NO07G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2551bp CTTGACGACGCTCTTGCTCGTGGGGGAGGGAGCCTCGCTTCTTTCCACCA GCCCGTTTGTTTGCTAGGCGTTGGAAAATGTGTCTCGCGCCAAAAAAGTG AAATTCGCGGCGAGGAATGAAGCAGAGCCTTGCCGTGCCTCGTATTCCCT GTCCCTCATTATATACCAGGTCTCCCTGCTCAAAGAAAAGAGTAAAGAAA GGTTACGATGGAAGTCTATAAATGTATTTAGGGGATACCGCTTATCTGCC CTCATCTTCATGCTTGCCTCCCCCGCGACCCAACACGGCTTGTGGATCAA CCAACTTGGAGTTGCTGTTGCCATGATGAGATACTTTGCGTTCCACCCCT CAACTCCCCGTCCGCATTTCACACTCCACCCTACATAATCACATGGCAGA AAAATGAAGACAACCAGCTTGGTCCTGTTCCTCGGAGCAGCTGTGGGGGC CGTGCAGGCGTCGGGGCCTAGTTTTAGCCCTGCTACTCTTTTCAATCGCT TCTCAGGATGGGGAGAGGAGGAGTACGAGTACGAAGAGGAGGAGGAGGGT CCCGGCCTGGCGGCCTTGGCTCTCAAGGCGTTGGTTGGAGCGGGAGTGGC GGCCGCAGGTGGAGCAGGGGTGTCGTTTGCTCGGCGGGCAATCAAGGCCA AGCAGCTGCAGCATGAGTCAGCTCCCTCGCGGCGCTCGTCCATGGCGGGC CGTAGCAGCACTACCTCAGGAGGGAGCAGCAGCACGTCATCCTTTGTCGA GAGCGGCATAAAGGGAGGCAAAAGCGATGCTAAGGCTCCTCGTGGAGCTA CGACGACAGCACCGCCACCGCCCACGGCCGCAGGTAGTGCCAGCGGGGAG CAGGAGGAAGTAGAGGAGCCTGAAGAGGTTTTCGAGGTCGAGCCGGTGCA GGAGCTGGACGAAAGCACGCTGACAGCGGCACAGAAAGAGCACCCAATGG CCAAATTGCTTGGACCTAAGCTGGTAAAGTACGATCCGAAAGATCGCAAG CTGGTGGAGGTGGCGACCGCGGACGTGTTGGACGGCAAGGTGACCTCGCT TTTCTTCCACGCGCACCAGGTAGAGCAAATGCTTGAGAAAATGAAGGCCG GCAAGGTCCTCCCCGGCATCAAGGACGTCTACGCCGAGCAACAGGAAAAG GGAAACAATTTCGAAGTCGTCTTTGTCCCGTTGCCTGATGGACAGGAAGG GCGTTTTCAGGCATACCTGAAGGATATGCCGTGGTATGCCGTCCCGTTTA ACTCCACCGAAAAGCTACGTGATGCATATAAGACCTTCAAGATCCAGAAC TTGCCGGCTGCAGTGATTGTAGATGAACAAGCGGACGTGATTAACGAGAA AGGATTCACCTACATGCTGATCGACAAGGATGGCTTCCCCTGGCGCCCCA AGACGCTGACCCAAATGATGGGTAGCACCTTTATCACCAACACGGGGAAA ACAGTCCCCGCCACGGAGGTGGCCAAGAAGAAGGTCTTGGCCCTCTATTT CTCTGCGAACTGGTGCAAGCCCTGCCGTGAATTCACTCCCAAGCTGGTCG AAGCTTATGAGCGATACCGTGCCGAAGGAAAAGACCTCGAAGTCGTTTTT GTGTCCATGGACGAGACCGAGGAGAAATTCAACGAATACTTTGCGGAGAT GCCCTGGCTCTCTCTCCCCTACACTGACAAGACCACTCGCTCCCTCCTTA TGACCGAGTTGGAAGTCCGCGGCCTCCCCTCCCTGGTCTTACTCGACGAG ACCCGTGAGGTGATTACCACCAAAGGCCGTGACTTTGTCCTCAAGGACCC CGAAGGTCGCAACTTCCCTTGGTACCCCCAGCCGTTGAACGAGATATCAT ACTCCTTCGATGGGATTGCCCAAAAACCTTCCATCGTTCTTTTCATGGAA GGAGCGGGCACGGTCGATCAAACCAAGATGATTGCGTCGATGCAGGCCGT GGCAGAAGAGTACACAGAGAAGAACAAGCTCGCGCCCGAGGAGGCTGCTC ACAGGTTCAATTTCTTCTATGCTCAAGAGATCTCAACATTCTCCAAGGCG CTCCGTTCCATCGCCGGCCTGGAGCAACTCAACCCGAAGGACAAGTTTTT GAAGGCAAAGGCCCAGGCGAACAAACCGAGGTTGGTGTTGTTGGATATCG CGAAGGAGGTCTGTCATGTGACCCCGGAAGAGGGAGCGGGGGATGTGGAC GAGGCGGCGATTCGGGCGATGCTTGAGGCACGGGTGGAAGGGACGCTCCC GATGGAAAGTTTCCGTCAACCGGAGCCCGAGAGCGCTGATGCGGCAGCTG CGGCTGCGGCGGCTGCGGCAGGAAAGGCATGAAGAGTAAGAGTGAGGGAG GGGATGGGCAGTTAGACGGGAAGAGTGAAGAAGACACACAGGCATGTGAG AGGTAAGCGACAGGCAGCAGCAAGCAAGACATCCAGAAGGACAGAATAAT AACACGTCAATAAAAGTCAGAGAAACCATCAAGGGAAGCAGAAGTAAAGG GAAAAAGCATCAACATTTTCCAAGAAAGGCCAAGCGTTCATCCATCATTT G back to topprotein sequence of NO07G01660.1 >NO07G01660.1-protein ID=NO07G01660.1-protein|Name=NO07G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp MKTTSLVLFLGAAVGAVQASGPSFSPATLFNRFSGWGEEEYEYEEEEEGP GLAALALKALVGAGVAAAGGAGVSFARRAIKAKQLQHESAPSRRSSMAGR SSTTSGGSSSTSSFVESGIKGGKSDAKAPRGATTTAPPPPTAAGSASGEQ EEVEEPEEVFEVEPVQELDESTLTAAQKEHPMAKLLGPKLVKYDPKDRKL VEVATADVLDGKVTSLFFHAHQVEQMLEKMKAGKVLPGIKDVYAEQQEKG NNFEVVFVPLPDGQEGRFQAYLKDMPWYAVPFNSTEKLRDAYKTFKIQNL PAAVIVDEQADVINEKGFTYMLIDKDGFPWRPKTLTQMMGSTFITNTGKT VPATEVAKKKVLALYFSANWCKPCREFTPKLVEAYERYRAEGKDLEVVFV SMDETEEKFNEYFAEMPWLSLPYTDKTTRSLLMTELEVRGLPSLVLLDET REVITTKGRDFVLKDPEGRNFPWYPQPLNEISYSFDGIAQKPSIVLFMEG AGTVDQTKMIASMQAVAEEYTEKNKLAPEEAAHRFNFFYAQEISTFSKAL RSIAGLEQLNPKDKFLKAKAQANKPRLVLLDIAKEVCHVTPEEGAGDVDE AAIRAMLEARVEGTLPMESFRQPEPESADAAAAAAAAAAGKA* back to topmRNA from alignment at chr7:503374..506073- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01660.1 ID=NO07G01660.1|Name=NO07G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp|location=Sequence derived from alignment at chr7:503374..506073- (Nannochloropsis oceanica) CTTGACGACGCTCTTGCTCGTGGGGGAGGGAGCCTCGCTTCTTTCCACCA
GCCCGTTTGTTTGCTAGGCGTTGGAAAATGTGTCTCGCGCCAAAAAAGTG
AAATTCGCGGCGAGGAATGAAGCAGAGCCTTGCCGTGCCTCGTATTCCCT
GTCCCTCATTATATACCAGGTCTCCCTGCTCAAAGAAAAGAGTAAAGAAA
GGTTACGATGGAAGTCTATAAATGTATTTAGGGGATACCGCTTATCTGCC
CTCATCTTCATGCTTGCCTCCCCCGCGACCCAACACGGCTTGTGGATCAA
CCAACTTGGAGTTGCTGTTGCCATGATGAGATACTTTGCGTTCCACCCCT
CAACTCCCCGTCCGCATTTCACACTCCACCCTACATAATCACATGGCAGA
AAAATGAAGACAACCAGCTTGGTCCTGTTCCTCGGAGCAGCTGTGGGGGC
CGTGCAGGCGTCGGGGCCTAGTTTTAGCCCTGCTACTCTTTTCAATCGCT
TCTCAGGATGGGGAGAGGAGGAGTACGAGTACGAAGAGGAGGAGGAGGGT
CCCGGCCTGGCGGCCTTGGCTCTCAAGGCGTTGGTTGGAGCGGGAGTGGC
GGCCGCAGGTGGAGCAGGGGTGTCGTTTGCTCGGCGGGCAATCAAGGCCA
AGCAGCTGCAGCATGAGTCAGCTCCCTCGCGGCGCTCGTCCATGGCGGGC
CGTAGCAGCACTACCTCAGGAGGGAGCAGCAGCACGTCATCCTTTGTCGA
GAGCGGCATAAAGGGAGGCAAAAGCGATGCTAAGGCTCCTCGTGGAGCTA
CGACGACAGCACCGCCACCGCCCACGGCCGCAGGTAGTGCCAGCGGGGAG
CAGGAGGAAGTAGAGGAGCCTGAAGAGGTTTTCGAGGTCGAGCCGGTGCA
GGAGCTGGACGAAAGCACGCTGACAGCGGCACAGAAAGAGCACCCAATGG
CCAAATTGCTTGGACCTAAGCTGGTAAAGTACGATCCGAAAGATCGCAAG
CTGGTGGAGGTGGCGACCGCGGACGTGTTGGACGGCAAGGTGACCTCGCT
TTTCTTCCACGCGCACCAGGTAAAGAGAGAGGGAGGGAAAGAAGGGATTG
AGAATAGGCGAAAGACCCTGCGATTGTGATCTATAACATACACATACTTT
GACAATCCAATTCCTGTCGACATCCTCTTCTCCTTTCTTCTCGTTCTCAC
AAACATACCCACAAACAGGTAGAGCAAATGCTTGAGAAAATGAAGGCCGG
CAAGGTCCTCCCCGGCATCAAGGACGTCTACGCCGAGCAACAGGAAAAGG
GAAACAATTTCGAAGTCGTCTTTGTCCCGTTGCCTGATGGACAGGAAGGG
CGTTTTCAGGCATACCTGAAGGATATGCCGTGGTATGCCGTCCCGTTTAA
CTCCACCGAAAAGCTACGTGATGCATATAAGACCTTCAAGATCCAGAACT
TGCCGGCTGCAGTGATTGTAGATGAACAAGCGGACGTGATTAACGAGAAA
GGATTCACCTACATGCTGATCGACAAGGATGGCTTCCCCTGGCGCCCCAA
GACGCTGACCCAAATGATGGGTAGCACCTTTATCACCAACACGGGGAAAA
CAGTCCCCGCCACGGAGGTGGCCAAGAAGAAGGTCTTGGCCCTCTATTTC
TCTGCGAACTGGTGCAAGCCCTGCCGTGAATTCACTCCCAAGCTGGTCGA
AGCTTATGAGCGATACCGTGCCGAAGGAAAAGACCTCGAAGTCGTTTTTG
TGTCCATGGACGAGACCGAGGAGAAATTCAACGAATACTTTGCGGAGATG
CCCTGGCTCTCTCTCCCCTACACTGACAAGACCACTCGCTCCCTCCTTAT
GACCGAGTTGGAAGTCCGCGGCCTCCCCTCCCTGGTCTTACTCGACGAGA
CCCGTGAGGTGATTACCACCAAAGGCCGTGACTTTGTCCTCAAGGACCCC
GAAGGTCGCAACTTCCCTTGGTACCCCCAGCCGTTGAACGAGATATCATA
CTCCTTCGATGGGATTGCCCAAAAACCTTCCATCGTTCTTTTCATGGAAG
GAGCGGGCACGGTCGATCAAACCAAGATGATTGCGTCGATGCAGGCCGTG
GCAGAAGAGTACACAGAGAAGAACAAGCTCGCGCCCGAGGAGGCTGCTCA
CAGGTTCAATTTCTTCTATGCTCAAGAGATCTCAACATTCTCCAAGGCGC
TCCGTTCCATCGCCGGCCTGGAGCAACTCAACCCGAAGGACAAGTTTTTG
AAGGCAAAGGCCCAGGCGAACAAACCGAGGTTGGTGTTGTTGGATATCGC
GAAGGAGGTCTGTCATGTGACCCCGGAAGAGGGAGCGGGGGATGTGGACG
AGGCGGCGATTCGGGCGATGCTTGAGGCACGGGTGGAAGGGACGCTCCCG
ATGGAAAGTTTCCGTCAACCGGAGCCCGAGAGCGCTGATGCGGCAGCTGC
GGCTGCGGCGGCTGCGGCAGGAAAGGCATGAAGAGTAAGAGTGAGGGAGG
GGATGGGCAGTTAGACGGGAAGAGTGAAGAAGACACACAGGCATGTGAGA
GGTAAGCGACAGGCAGCAGCAAGCAAGACATCCAGAAGGACAGAATAATA
ACACGTCAATAAAAGTCAGAGAAACCATCAAGGGAAGCAGAAGTAAAGGG
AAAAAGCATCAACATTTTCCAAGAAAGGCCAAGCGTTCATCCATCATTTG
back to topCoding sequence (CDS) from alignment at chr7:503374..506073- >NO07G01660.1 ID=NO07G01660.1|Name=NO07G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1929bp|location=Sequence derived from alignment at chr7:503374..506073- (Nannochloropsis oceanica) ATGAAGACAACCAGCTTGGTCCTGTTCCTCGGAGCAGCTGTGGGGGCCGT GCAGGCGTCGGGGCCTAGTTTTAGCCCTGCTACTCTTTTCAATCGCTTCT CAGGATGGGGAGAGGAGGAGTACGAGTACGAAGAGGAGGAGGAGGGTCCC GGCCTGGCGGCCTTGGCTCTCAAGGCGTTGGTTGGAGCGGGAGTGGCGGC CGCAGGTGGAGCAGGGGTGTCGTTTGCTCGGCGGGCAATCAAGGCCAAGC AGCTGCAGCATGAGTCAGCTCCCTCGCGGCGCTCGTCCATGGCGGGCCGT AGCAGCACTACCTCAGGAGGGAGCAGCAGCACGTCATCCTTTGTCGAGAG CGGCATAAAGGGAGGCAAAAGCGATGCTAAGGCTCCTCGTGGAGCTACGA CGACAGCACCGCCACCGCCCACGGCCGCAGGTAGTGCCAGCGGGGAGCAG GAGGAAGTAGAGGAGCCTGAAGAGGTTTTCGAGGTCGAGCCGGTGCAGGA GCTGGACGAAAGCACGCTGACAGCGGCACAGAAAGAGCACCCAATGGCCA AATTGCTTGGACCTAAGCTGGTAAAGTACGATCCGAAAGATCGCAAGCTG GTGGAGGTGGCGACCGCGGACGTGTTGGACGGCAAGGTGACCTCGCTTTT CTTCCACGCGCACCAGGTAGAGCAAATGCTTGAGAAAATGAAGGCCGGCA AGGTCCTCCCCGGCATCAAGGACGTCTACGCCGAGCAACAGGAAAAGGGA AACAATTTCGAAGTCGTCTTTGTCCCGTTGCCTGATGGACAGGAAGGGCG TTTTCAGGCATACCTGAAGGATATGCCGTGGTATGCCGTCCCGTTTAACT CCACCGAAAAGCTACGTGATGCATATAAGACCTTCAAGATCCAGAACTTG CCGGCTGCAGTGATTGTAGATGAACAAGCGGACGTGATTAACGAGAAAGG ATTCACCTACATGCTGATCGACAAGGATGGCTTCCCCTGGCGCCCCAAGA CGCTGACCCAAATGATGGGTAGCACCTTTATCACCAACACGGGGAAAACA GTCCCCGCCACGGAGGTGGCCAAGAAGAAGGTCTTGGCCCTCTATTTCTC TGCGAACTGGTGCAAGCCCTGCCGTGAATTCACTCCCAAGCTGGTCGAAG CTTATGAGCGATACCGTGCCGAAGGAAAAGACCTCGAAGTCGTTTTTGTG TCCATGGACGAGACCGAGGAGAAATTCAACGAATACTTTGCGGAGATGCC CTGGCTCTCTCTCCCCTACACTGACAAGACCACTCGCTCCCTCCTTATGA CCGAGTTGGAAGTCCGCGGCCTCCCCTCCCTGGTCTTACTCGACGAGACC CGTGAGGTGATTACCACCAAAGGCCGTGACTTTGTCCTCAAGGACCCCGA AGGTCGCAACTTCCCTTGGTACCCCCAGCCGTTGAACGAGATATCATACT CCTTCGATGGGATTGCCCAAAAACCTTCCATCGTTCTTTTCATGGAAGGA GCGGGCACGGTCGATCAAACCAAGATGATTGCGTCGATGCAGGCCGTGGC AGAAGAGTACACAGAGAAGAACAAGCTCGCGCCCGAGGAGGCTGCTCACA GGTTCAATTTCTTCTATGCTCAAGAGATCTCAACATTCTCCAAGGCGCTC CGTTCCATCGCCGGCCTGGAGCAACTCAACCCGAAGGACAAGTTTTTGAA GGCAAAGGCCCAGGCGAACAAACCGAGGTTGGTGTTGTTGGATATCGCGA AGGAGGTCTGTCATGTGACCCCGGAAGAGGGAGCGGGGGATGTGGACGAG GCGGCGATTCGGGCGATGCTTGAGGCACGGGTGGAAGGGACGCTCCCGAT GGAAAGTTTCCGTCAACCGGAGCCCGAGAGCGCTGATGCGGCAGCTGCGG CTGCGGCGGCTGCGGCAGGAAAGGCATGA back to top
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