NO07G01650.1, NO07G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01650.1
Unique NameNO07G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1227
Alignment locationchr7:501884..503397 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:501884..503397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01650.1 vs.
Match: EWM27147.1 (thioredoxin m [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 1.600e-65
Identity = 133/176 (75.57%), Postives = 149/176 (84.66%), Query Frame = 0 
Query:    2 MQLKNKQALGVC-LLLVAALAQAFMPATLSGMQRVHRHSRPRGGPVMMAGDSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELTKMVNHYCFGAPLDGATAAADEEIKDV 177
            + L  KQ L V  LL++ AL QAF+P ++S ++ V   S P+G P+MMAG+SGVLKV+GEELEK LAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEP IASALKVYGLPTIFFIREGQL+HR+EGAMPASELTK+VNHYCFGAP        +EEIKDV
Sbjct:    6 LPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAP--------EEEIKDV 173
The following BLAST results are available for this feature:
BLAST of NO07G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27147.11.600e-6575.57thioredoxin m [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01650NO07G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01650.1NO07G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01650.1.cds1NO07G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01650.1.cds2NO07G01650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01650.1.cds3NO07G01650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01650.1 ID=NO07G01650.1|Name=NO07G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
TCCCAACATCTCCAGGCACCTGTTTTGTGGTGAATGGATGAGGCGCATGC
GTCAGATGCCGAAGTAATCAAGGGATGGGGGACCTGTGGTGGGGGAGGAG
AGAAGGAAAAGAGATGGGACACCGGCAATGCTTTCATCAGACATTACCTT
CTTATCGAGCACGCACAAAGCAAGGTGCGGGCAACGTCCACCTCGCCCAT
CAAGTCTTTCTCCCACTGTTGCTCACTCAAGCGAACACGCACAGGTCTCC
CTCCTTCGACTTCTCCCAATCAGCACTGAAAGTCGCTTGCCACCATGATG
CAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCCTGGTGGCCGC
CTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATGCAGCGAGTGC
ATCGTCATAGCCGTCCTCGAGGCGGGCCTGTGATGATGGCTGGGGACAGC
GGCGTGCTCAAGGTAACAGGGGAAGAACTCGAGAAAGCCCTGGCGGAGGT
GGGCAGCCCCGTCCTCCTCGACGTCTACGCGCAGTGGTGCGGTCCTTGCC
AAATCCTTGCTGGCGAGTTGGATAAGGTCAAGGGGCTGTACAAGGACAAG
CTGCGAGTATTAAAGGTGGACTCGGATGAGGAGCCTGCGATTGCCTCTGC
GCTCAAGGTGTATGGCCTTCCCACAATATTCTTCATCCGCGAGGGACAGT
TGGTCCATCGTATGGAGGGTGCTATGCCGGCGTCGGAGCTGACCAAGATG
GTGAATCATTATTGCTTTGGTGCACCTTTGGATGGTGCAACAGCGGCAGC
GGATGAGGAAATCAAGGATGTTTGAGAAAGGAGGGGAAGAGGGGAAAGGC
CGAAAGAAGGTACCGAAAGATGCCATGCATGCACGGACGCAAGTAAGCAA
GAAATAGATTTATCGAGCAGAGAAGGAGGCAGAAGAGGAATGAGCAAAGG
TCTGCGACGTTACAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTTGCT
GTTGTGGTGATGGAAGGATGCATGTTGTGTCGTTGTATATATTGAAGGGA
GGGTGCCCTAGGGGGGTAAGGGGGTAAGAGTGGATTGTTCGAGTACCTTT
TATTTGTCATGCCTCTGTTGCAGATGGTGCGATGGTGACGTGGAGACGCG
TCTGGACACGAGGAAAGGGGATCGTTAAGACAAGGAGAAGAAAAGTGGCA
CACCAAATGATGGATGAACGCTTGGCC
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protein sequence of NO07G01650.1

>NO07G01650.1-protein ID=NO07G01650.1-protein|Name=NO07G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MMQLKNKQALGVCLLLVAALAQAFMPATLSGMQRVHRHSRPRGGPVMMAG
DSGVLKVTGEELEKALAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYK
DKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELT
KMVNHYCFGAPLDGATAAADEEIKDV*
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mRNA from alignment at chr7:501884..503397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01650.1 ID=NO07G01650.1|Name=NO07G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1514bp|location=Sequence derived from alignment at chr7:501884..503397+ (Nannochloropsis oceanica)
TCCCAACATCTCCAGGCACCTGTTTTGTGGTGAATGGATGAGGCGCATGC
GTCAGATGCCGAAGTAATCAAGGGATGGGGGACCTGTGGTGGGGGAGGAG
AGAAGGAAAAGAGATGGGACACCGGCAATGCTTTCATCAGACATTACCTT
CTTATCGAGCACGCACAAAGCAAGGTGCGGGCAACGTCCACCTCGCCCAT
CAAGTCTTTCTCCCACTGTTGCTCACTCAAGCGAACACGCACAGGTCTCC
CTCCTTCGACTTCTCCCAATCAGCACTGAAAGTCGCTTGCCACCATGATG
CAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCCTGGTGGCCGC
CTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATGCAGCGAGGTA
TGTGGAGCGGTGATGTGCAGACGGAGCGAACGGGATATCGGTAGAGATGG
AATGCGAGGCAGAGAGAGCACTGCATTTGATTCAGAGAGAGCACAGCATT
TGATTCTACCTACCCACCCTTCGCTCTTACTCATTTCCACATTCCTACAT
CCCAAAACACAGTGCATCGTCATAGCCGTCCTCGAGGCGGGCCTGTGATG
ATGGCTGGGGACAGCGGCGTGCTCAAGGTAACAGGGGAAGAACTCGAGAA
AGCCCTGGCGGAGGTGGGCAGCCCCGTCCTCCTCGACGTCTACGCGCAGT
GGTGCGGTCCTTGCCAAATCCTTGCTGGCGAGTTGGATAAGGTCAAGGGG
CTGTACAAGGACAAGCTGCGAGTATTAAAGGTGGACTCGGATGAGGAGCC
TGCGATTGCCTCTGCGCTCAAGGTGTATGGGTAAGAAAGGATAAGGATAT
CCTCTCACTTACCCTTCCTTCCTTGTTTCCTCCTTCCTCTCCTCCTCACC
TAATTTATCCTCCCTAACCTCCATACCCCTTTTTCCCGTTTCCATCCAAA
AGCCTTCCCACAATATTCTTCATCCGCGAGGGACAGTTGGTCCATCGTAT
GGAGGGTGCTATGCCGGCGTCGGAGCTGACCAAGATGGTGAATCATTATT
GCTTTGGTGCACCTTTGGATGGTGCAACAGCGGCAGCGGATGAGGAAATC
AAGGATGTTTGAGAAAGGAGGGGAAGAGGGGAAAGGCCGAAAGAAGGTAC
CGAAAGATGCCATGCATGCACGGACGCAAGTAAGCAAGAAATAGATTTAT
CGAGCAGAGAAGGAGGCAGAAGAGGAATGAGCAAAGGTCTGCGACGTTAC
AGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTTGCTGTTGTGGTGATGG
AAGGATGCATGTTGTGTCGTTGTATATATTGAAGGGAGGGTGCCCTAGGG
GGGTAAGGGGGTAAGAGTGGATTGTTCGAGTACCTTTTATTTGTCATGCC
TCTGTTGCAGATGGTGCGATGGTGACGTGGAGACGCGTCTGGACACGAGG
AAAGGGGATCGTTAAGACAAGGAGAAGAAAAGTGGCACACCAAATGATGG
ATGAACGCTTGGCC
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Coding sequence (CDS) from alignment at chr7:501884..503397+

>NO07G01650.1 ID=NO07G01650.1|Name=NO07G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr7:501884..503397+ (Nannochloropsis oceanica)
ATGATGCAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCCTGGT
GGCCGCCTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATGCAGC
GAGTGCATCGTCATAGCCGTCCTCGAGGCGGGCCTGTGATGATGGCTGGG
GACAGCGGCGTGCTCAAGGTAACAGGGGAAGAACTCGAGAAAGCCCTGGC
GGAGGTGGGCAGCCCCGTCCTCCTCGACGTCTACGCGCAGTGGTGCGGTC
CTTGCCAAATCCTTGCTGGCGAGTTGGATAAGGTCAAGGGGCTGTACAAG
GACAAGCTGCGAGTATTAAAGGTGGACTCGGATGAGGAGCCTGCGATTGC
CTCTGCGCTCAAGGTGTATGGCCTTCCCACAATATTCTTCATCCGCGAGG
GACAGTTGGTCCATCGTATGGAGGGTGCTATGCCGGCGTCGGAGCTGACC
AAGATGGTGAATCATTATTGCTTTGGTGCACCTTTGGATGGTGCAACAGC
GGCAGCGGATGAGGAAATCAAGGATGTTTGA
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Synonyms
Publications