NO07G01640.1, NO07G01640.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01640.1
Unique Name	NO07G01640.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1836
Alignment location	chr7:499837..502083 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:499837..502083 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO07G01640.1 vs.
Match: EWM27167.1 (glycyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 939.1 bits (2426), Expect = 6.900e-270
Identity = 471/590 (79.83%), Postives = 512/590 (86.78%), Query Frame = 0

Query:   22 MLGFHRRVSIASATVLFMLVSTGSCAASALLKRQHTGFLPGGRGGVLVARTLRTISSSSTHKRNLMSMSSQAPTKKEAAAAPAKMAGGVGSTYNMEDIVNVCKRRGFVFQSSEIYNGFNGFYDYGPLGVELKNNIKQRWWRDMVHSRDDVVGLDSSIISSPRVWEASGHVSGFVDPMVDCKVSKLRYRADQLFYAKVELNDDEGVIGYISLLDCGDLQGEATKLAEKLKRKAGKQGTIKLPLDIKDMTKATEAELVLIPSPATGEAGSLTPPRSFNLMFQTSVGALSDGSSTAYLRPETAQGIFTNFKNVQSTARVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPEEEVWEGFYEGWIETAWGWLTSIGMREDLMDKEVHPKDDLAHYARACTDIVFMFPFGQVELQGVAARGDYDLTQHQTSSGKSMEYFDEAGKRKYLPHVIEPSIGVDRLFLALICSAYAEDEVEGEKRVVMKFHPSMAPIKVGIFPLVKNKPEIMAKARGIHDLLKKRYNVFWDVSGAIGRRYRRMDEAGTPFCITVDFDTLEDNTVTVRERDSTKQTRMNVEELLGFLDREING 612
            M+G  RR S+  A +  ML +T S  ASA    Q+ GFL  G GG +  R  RT    +  +R L+   S+AP  KE           V STYNMEDIVNVCKRRGFVFQSSEIYNGFNGFYDYGPLGVELKNNIKQRWWRDMVHSRDD+VGLDSSII+SPRVWEASGHV+GFVDPMVDC+VSKLRYRADQL++ KVEL +D  VIGYI+LLD GDL GEA KLAEKLK+KAGK+GTIK PLDIKDMTKAT AE+ LIPSPATGE GSLTPPR+FNLMFQTSVGAL+D SSTA+LRPETAQGIFTNFKNVQST RVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPEEEVW  FY  WIETAW WLTSIGMREDLM ++VH K DLAHYA+ACTDIVF FPFGQVELQG+AARGDYDLTQHQTSSGKSMEYFDEA KR+Y+PHVIEPSIGVDRLFLALICSAYAEDE+EGEKRVV+KFHPSMAPIKVG+FPLVKNKPEIM KAR I+D LK+RYNVFWDVSGAIGRRYRRMDEAGTPFCITVDFDTLED++VTVRERDST+QTRM V++LL F D+EING
Sbjct:    1 MVGPKRRTSLVFAVL--MLSTTRSFIASAFSNVQNAGFLGRG-GGQIPGRVFRT----AEQRRGLVRTPSRAPPTKELLVTSPDEDTTV-STYNMEDIVNVCKRRGFVFQSSEIYNGFNGFYDYGPLGVELKNNIKQRWWRDMVHSRDDMVGLDSSIIASPRVWEASGHVAGFVDPMVDCRVSKLRYRADQLYFTKVELQEDGEVIGYIALLDSGDLHGEARKLAEKLKKKAGKEGTIKFPLDIKDMTKATVAEMALIPSPATGEPGSLTPPRAFNLMFQTSVGALADASSTAFLRPETAQGIFTNFKNVQSTGRVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPEEEVWPDFYNKWIETAWQWLTSIGMREDLMGRDVHLKGDLAHYAKACTDIVFRFPFGQVELQGIAARGDYDLTQHQTSSGKSMEYFDEANKRRYVPHVIEPSIGVDRLFLALICSAYAEDEIEGEKRVVLKFHPSMAPIKVGVFPLVKNKPEIMEKARAIYDQLKRRYNVFWDVSGAIGRRYRRMDEAGTPFCITVDFDTLEDDSVTVRERDSTRQTRMKVDDLLAFFDKEING 582

The following BLAST results are available for this feature:

BLAST of NO07G01640.1 vs.

BLAST of NO07G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27167.1	6.900e-270	79.83	glycyl-trna synthetase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01640	NO07G01640	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01640.1	NO07G01640.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01640.1.cds1	NO07G01640.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01640.1.cds2	NO07G01640.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01640.1.cds3	NO07G01640.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01640.1.cds4	NO07G01640.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:499837..502083-
coding sequence from alignment at chr7:499837..502083-

mRNA sequence

>NO07G01640.1 ID=NO07G01640.1|Name=NO07G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp
ATGGGCGAGGTGGACGTTGCCCGCACCTTGCTTTGTGCGTGCTCGATAAG
AAGGTGCCTGGAGATGTTGGGATTCCACAGGCGTGTCTCCATCGCCTCCG
CTACCGTCCTTTTTATGTTGGTTTCAACAGGTTCATGTGCTGCCTCGGCA
CTGCTCAAGCGGCAGCACACCGGCTTCCTACCGGGGGGGAGGGGAGGCGT
GTTGGTCGCCCGTACATTGCGGACTATCAGCAGCAGCAGCACACACAAGC
GAAACCTGATGAGCATGTCTTCCCAAGCGCCAACCAAGAAGGAGGCAGCA
GCAGCCCCTGCCAAGATGGCGGGAGGAGTGGGGTCGACATATAATATGGA
AGACATCGTGAATGTATGCAAGCGACGGGGGTTTGTCTTTCAGTCGTCCG
AAATTTACAATGGCTTTAATGGCTTCTATGACTACGGCCCTTTGGGCGTC
GAACTCAAAAATAACATCAAACAACGCTGGTGGCGTGACATGGTTCACTC
TCGCGACGATGTAGTAGGCCTGGACTCCAGCATTATCTCCTCTCCACGGG
TATGGGAAGCCTCTGGTCATGTCTCGGGTTTCGTGGATCCTATGGTTGAT
TGCAAGGTTTCCAAGCTTCGTTATCGCGCCGACCAGCTTTTCTACGCCAA
AGTTGAGTTGAATGACGATGAAGGGGTGATCGGATACATTTCCCTTCTGG
ACTGTGGGGATTTGCAAGGAGAGGCGACCAAACTGGCCGAAAAACTGAAG
AGGAAGGCTGGGAAGCAGGGCACGATCAAGCTGCCCCTCGATATAAAGGA
CATGACCAAAGCCACCGAAGCCGAACTGGTGCTCATCCCCTCCCCCGCGA
CTGGGGAAGCGGGTTCATTGACTCCTCCTCGATCGTTTAATTTGATGTTC
CAAACATCTGTGGGTGCCCTTTCAGACGGCTCTTCGACAGCGTACCTTCG
TCCGGAGACCGCTCAGGGTATTTTCACTAACTTTAAAAACGTCCAAAGCA
CCGCAAGAGTGAAGGTTCCTTTCGGGATCGCCCAAATAGGCAAGGCCTTT
CGAAATGAAATCACCCCCCGAAATTTTATCTTTCGTTCCAGGGAGTTCGA
GCAGATGGAGATTGAATATTTCATTCCCCCGGAGGAGGAAGTGTGGGAGG
GTTTTTATGAAGGGTGGATCGAGACGGCGTGGGGGTGGTTGACCAGCATT
GGGATGCGGGAGGACTTGATGGATAAGGAGGTGCACCCGAAGGATGATTT
GGCACATTATGCACGGGCATGCACCGATATTGTGTTTATGTTTCCTTTTG
GCCAGGTGGAATTGCAGGGTGTGGCGGCACGAGGCGATTATGATTTGACG
CAGCATCAAACGAGCAGTGGGAAGAGCATGGAGTATTTCGATGAGGCGGG
AAAAAGGAAGTATTTGCCGCATGTAATTGAGCCGAGTATTGGGGTGGACC
GATTATTCTTGGCGTTGATTTGCTCGGCGTATGCAGAGGATGAGGTTGAG
GGGGAGAAGCGGGTGGTAATGAAATTTCACCCGAGCATGGCGCCCATCAA
GGTGGGCATTTTTCCGTTGGTGAAAAATAAGCCGGAGATTATGGCAAAGG
CGCGGGGGATTCATGACCTATTGAAGAAACGGTACAATGTTTTCTGGGAC
GTGAGTGGGGCGATTGGACGGAGGTACAGGCGGATGGATGAAGCGGGCAC
CCCTTTTTGTATTACAGTTGATTTTGATACGTTGGAAGATAACACGGTGA
CAGTTAGGGAGCGGGACAGCACAAAACAGACCCGAATGAACGTCGAAGAG
TTGCTCGGATTTTTGGATAGGGAGATCAATGGGTAG

protein sequence of NO07G01640.1

>NO07G01640.1-protein ID=NO07G01640.1-protein|Name=NO07G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MGEVDVARTLLCACSIRRCLEMLGFHRRVSIASATVLFMLVSTGSCAASA
LLKRQHTGFLPGGRGGVLVARTLRTISSSSTHKRNLMSMSSQAPTKKEAA
AAPAKMAGGVGSTYNMEDIVNVCKRRGFVFQSSEIYNGFNGFYDYGPLGV
ELKNNIKQRWWRDMVHSRDDVVGLDSSIISSPRVWEASGHVSGFVDPMVD
CKVSKLRYRADQLFYAKVELNDDEGVIGYISLLDCGDLQGEATKLAEKLK
RKAGKQGTIKLPLDIKDMTKATEAELVLIPSPATGEAGSLTPPRSFNLMF
QTSVGALSDGSSTAYLRPETAQGIFTNFKNVQSTARVKVPFGIAQIGKAF
RNEITPRNFIFRSREFEQMEIEYFIPPEEEVWEGFYEGWIETAWGWLTSI
GMREDLMDKEVHPKDDLAHYARACTDIVFMFPFGQVELQGVAARGDYDLT
QHQTSSGKSMEYFDEAGKRKYLPHVIEPSIGVDRLFLALICSAYAEDEVE
GEKRVVMKFHPSMAPIKVGIFPLVKNKPEIMAKARGIHDLLKKRYNVFWD
VSGAIGRRYRRMDEAGTPFCITVDFDTLEDNTVTVRERDSTKQTRMNVEE
LLGFLDREING*

mRNA from alignment at chr7:499837..502083-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G01640.1 ID=NO07G01640.1|Name=NO07G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at chr7:499837..502083- (Nannochloropsis oceanica)
ATGGGCGAGGTGGACGTTGCCCGCACCTTGCTTTGTGCGTGCTCGATAAG
AAGGTAATGTCTGATGAAAGCATTGCCGGTGTCCCATCTCTTTTCCTTCT
CTCCTCCCCCACCACAGGTCCCCCATCCCTTGATTACTTCGGCATCTGAC
GCATGCGCCTCATCCATTCACCACAAAACAGGTGCCTGGAGATGTTGGGA
TTCCACAGGCGTGTCTCCATCGCCTCCGCTACCGTCCTTTTTATGTTGGT
TTCAACAGGTAAGTCTCTGACCGAGAGGCAAGGCAGGTCATGAGTCGGGC
CAACAAAGCAACGTATGTGCTGTGGATACTCGGCGTTTGTGCTGCTTGTT
TGCGCTGTGTATCACCACCTATGGCAGTGGCAGTGTCGAAAAACAGTAAC
TAGGATCTGAACTCACATTCTATCATATTCACCCAGGTTCATGTGCTGCC
TCGGCACTGCTCAAGCGGCAGCACACCGGCTTCCTACCGGGGGGGAGGGG
AGGCGTGTTGGTCGCCCGTACATTGCGGACTATCAGCAGCAGCAGCACAC
ACAAGCGAAACCTGATGAGCATGTCTTCCCAAGCGCCAACCAAGAAGGAG
GCAGCAGCAGCCCCTGCCAAGATGGCGGGAGGAGTGGGGTCGACATATAA
TATGGAAGACATCGTGAATGTATGCAAGCGACGGGGGTTTGTCTTTCAGT
CGTCCGAAATTTACAATGGCTTTAATGGCTTCTATGACTACGGCCCTTTG
GGCGGTACGTACAACCAATAGCTAGCTTTCTTCTGCTGCCACCATTACCT
CCCCCACCATACCATTCACATCACATCCCTGCCTCCCTCCTCTCCCCTGA
CCCCTGTAGTCGAACTCAAAAATAACATCAAACAACGCTGGTGGCGTGAC
ATGGTTCACTCTCGCGACGATGTAGTAGGCCTGGACTCCAGCATTATCTC
CTCTCCACGGGTATGGGAAGCCTCTGGTCATGTCTCGGGTTTCGTGGATC
CTATGGTTGATTGCAAGGTTTCCAAGCTTCGTTATCGCGCCGACCAGCTT
TTCTACGCCAAAGTTGAGTTGAATGACGATGAAGGGGTGATCGGATACAT
TTCCCTTCTGGACTGTGGGGATTTGCAAGGAGAGGCGACCAAACTGGCCG
AAAAACTGAAGAGGAAGGCTGGGAAGCAGGGCACGATCAAGCTGCCCCTC
GATATAAAGGACATGACCAAAGCCACCGAAGCCGAACTGGTGCTCATCCC
CTCCCCCGCGACTGGGGAAGCGGGTTCATTGACTCCTCCTCGATCGTTTA
ATTTGATGTTCCAAACATCTGTGGGTGCCCTTTCAGACGGCTCTTCGACA
GCGTACCTTCGTCCGGAGACCGCTCAGGGTATTTTCACTAACTTTAAAAA
CGTCCAAAGCACCGCAAGAGTGAAGGTTCCTTTCGGGATCGCCCAAATAG
GCAAGGCCTTTCGAAATGAAATCACCCCCCGAAATTTTATCTTTCGTTCC
AGGGAGTTCGAGCAGATGGAGATTGAATATTTCATTCCCCCGGAGGAGGA
AGTGTGGGAGGGTTTTTATGAAGGGTGGATCGAGACGGCGTGGGGGTGGT
TGACCAGCATTGGGATGCGGGAGGACTTGATGGATAAGGAGGTGCACCCG
AAGGATGATTTGGCACATTATGCACGGGCATGCACCGATATTGTGTTTAT
GTTTCCTTTTGGCCAGGTGGAATTGCAGGGTGTGGCGGCACGAGGCGATT
ATGATTTGACGCAGCATCAAACGAGCAGTGGGAAGAGCATGGAGTATTTC
GATGAGGCGGGAAAAAGGAAGTATTTGCCGCATGTAATTGAGCCGAGTAT
TGGGGTGGACCGATTATTCTTGGCGTTGATTTGCTCGGCGTATGCAGAGG
ATGAGGTTGAGGGGGAGAAGCGGGTGGTAATGAAATTTCACCCGAGCATG
GCGCCCATCAAGGTGGGCATTTTTCCGTTGGTGAAAAATAAGCCGGAGAT
TATGGCAAAGGCGCGGGGGATTCATGACCTATTGAAGAAACGGTACAATG
TTTTCTGGGACGTGAGTGGGGCGATTGGACGGAGGTACAGGCGGATGGAT
GAAGCGGGCACCCCTTTTTGTATTACAGTTGATTTTGATACGTTGGAAGA
TAACACGGTGACAGTTAGGGAGCGGGACAGCACAAAACAGACCCGAATGA
ACGTCGAAGAGTTGCTCGGATTTTTGGATAGGGAGATCAATGGGTAG

Coding sequence (CDS) from alignment at chr7:499837..502083-

>NO07G01640.1 ID=NO07G01640.1|Name=NO07G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at chr7:499837..502083- (Nannochloropsis oceanica)
ATGGGCGAGGTGGACGTTGCCCGCACCTTGCTTTGTGCGTGCTCGATAAG
AAGGTGCCTGGAGATGTTGGGATTCCACAGGCGTGTCTCCATCGCCTCCG
CTACCGTCCTTTTTATGTTGGTTTCAACAGGTTCATGTGCTGCCTCGGCA
CTGCTCAAGCGGCAGCACACCGGCTTCCTACCGGGGGGGAGGGGAGGCGT
GTTGGTCGCCCGTACATTGCGGACTATCAGCAGCAGCAGCACACACAAGC
GAAACCTGATGAGCATGTCTTCCCAAGCGCCAACCAAGAAGGAGGCAGCA
GCAGCCCCTGCCAAGATGGCGGGAGGAGTGGGGTCGACATATAATATGGA
AGACATCGTGAATGTATGCAAGCGACGGGGGTTTGTCTTTCAGTCGTCCG
AAATTTACAATGGCTTTAATGGCTTCTATGACTACGGCCCTTTGGGCGTC
GAACTCAAAAATAACATCAAACAACGCTGGTGGCGTGACATGGTTCACTC
TCGCGACGATGTAGTAGGCCTGGACTCCAGCATTATCTCCTCTCCACGGG
TATGGGAAGCCTCTGGTCATGTCTCGGGTTTCGTGGATCCTATGGTTGAT
TGCAAGGTTTCCAAGCTTCGTTATCGCGCCGACCAGCTTTTCTACGCCAA
AGTTGAGTTGAATGACGATGAAGGGGTGATCGGATACATTTCCCTTCTGG
ACTGTGGGGATTTGCAAGGAGAGGCGACCAAACTGGCCGAAAAACTGAAG
AGGAAGGCTGGGAAGCAGGGCACGATCAAGCTGCCCCTCGATATAAAGGA
CATGACCAAAGCCACCGAAGCCGAACTGGTGCTCATCCCCTCCCCCGCGA
CTGGGGAAGCGGGTTCATTGACTCCTCCTCGATCGTTTAATTTGATGTTC
CAAACATCTGTGGGTGCCCTTTCAGACGGCTCTTCGACAGCGTACCTTCG
TCCGGAGACCGCTCAGGGTATTTTCACTAACTTTAAAAACGTCCAAAGCA
CCGCAAGAGTGAAGGTTCCTTTCGGGATCGCCCAAATAGGCAAGGCCTTT
CGAAATGAAATCACCCCCCGAAATTTTATCTTTCGTTCCAGGGAGTTCGA
GCAGATGGAGATTGAATATTTCATTCCCCCGGAGGAGGAAGTGTGGGAGG
GTTTTTATGAAGGGTGGATCGAGACGGCGTGGGGGTGGTTGACCAGCATT
GGGATGCGGGAGGACTTGATGGATAAGGAGGTGCACCCGAAGGATGATTT
GGCACATTATGCACGGGCATGCACCGATATTGTGTTTATGTTTCCTTTTG
GCCAGGTGGAATTGCAGGGTGTGGCGGCACGAGGCGATTATGATTTGACG
CAGCATCAAACGAGCAGTGGGAAGAGCATGGAGTATTTCGATGAGGCGGG
AAAAAGGAAGTATTTGCCGCATGTAATTGAGCCGAGTATTGGGGTGGACC
GATTATTCTTGGCGTTGATTTGCTCGGCGTATGCAGAGGATGAGGTTGAG
GGGGAGAAGCGGGTGGTAATGAAATTTCACCCGAGCATGGCGCCCATCAA
GGTGGGCATTTTTCCGTTGGTGAAAAATAAGCCGGAGATTATGGCAAAGG
CGCGGGGGATTCATGACCTATTGAAGAAACGGTACAATGTTTTCTGGGAC
GTGAGTGGGGCGATTGGACGGAGGTACAGGCGGATGGATGAAGCGGGCAC
CCCTTTTTGTATTACAGTTGATTTTGATACGTTGGAAGATAACACGGTGA
CAGTTAGGGAGCGGGACAGCACAAAACAGACCCGAATGAACGTCGAAGAG
TTGCTCGGATTTTTGGATAGGGAGATCAATGGGTAG

Synonyms

Publications