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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:478169..479982 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01580.2 vs.
Match: EWM27145.1 (Pleckstrin like protein [Nannochloropsis gaditana]) HSP 1 Score: 215.7 bits (548), Expect = 8.400e-53 Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0
Query: 12 GWLTKQSSWLKDWRRRYFILKGSKLFFAKNEAGSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEGGD-DDDGSDSEE 127
GWLTKQSSWLK+WRRRYFILKGSKLFFAKNE SPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGE GD DDDGSD E+
Sbjct: 23 GWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED 138
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01580.2 ID=NO07G01580.2|Name=NO07G01580.2|organism=Nannochloropsis oceanica|type=mRNA|length=1526bp
CGATGCTGCTTGCTTGTCTTGTGGGTGCGTGCGGGACGGGGGGGGAGCGT
TAGCATCAAGTACCAATACCAGACATCGTCCACGAACAAAAGCATCAAGG
CATATAGAACAAGAAGGATGTGTGTGACCAAGCAAAGCCTCAGCTAACCT
CAAAGCAGCACTAAAGCAAGGATGACCCTCGCTACGCGCAGAGCCTCCTC
TGAAATTTGCCAGCGACGACAAGAGGCCCCGCCGAGCGATATGGGCAAGC
CGTCTTGTTATTCATTGGCCGCTCCCCCACTCACATGCCTCCACACGCAT
ACCAAGCAGTCTCAACGCTCACTACCCTCCTTACTCCTATGTTTCTACAG
GCTCCGCTGGTTGTTTGGATTGCGTAGCTTTGACAGCCGCCGCGTCGTCT
TGCCACCCGTCATAGTCATCGCAGAGAGCGACAGGAACACTTGCGTCTCC
AAATCGAATAGCACTCTTAGTCATGAGGGGCACCTACATAGACCCCAATA
CAAACATCCGCTACGACACCAATAATGCGGACTTTGAAGGTACGTGGGTG
TGCTGGCCAAGCTGTTTTTTTTAAAAGCAAATCAAGGGAAGACGGTGGGG
CTGAATGCCATAAATAGGTCAGAAAACCCACCTCTCTCAAAGAACCTAGG
GTTCTGACCCAGCAGAAACGGCCCAGAGAGTATGCCTATGATCCGTAGTC
CTGCTCTGTCTTGTGCTGTGTAGAAACTGGGTCTGCTGTATGTGGTGGCT
CAGGCTCTGGTTCCTCATTCTTGGTAGCGTTGGAGAGGCCTAGAAAAAAT
TAGTCTGGCAGAATCACAGCCCAAGAAGCCAGGGATATCACGCCACTTCC
ACGACTCAGGCATAACTGGCATCAATATAGGATTGATTGCTGCTTGGCTC
CGGTTTCAGGCTTGCCCCCAAAATATGGCTCAACAGCCTGACTAAGAAGT
GAACCAAGTTGCCAGTGGTTCCTCCGACGTTTGGGACCAGTCCCTCGATG
AAGATTGTCCATAACGAGCTCTTATGCGCACCCGTTTCCATTTACAACAT
ATAACAGGGTGGTTGACAAAGCAGAGCAGCTGGCTGAAGGATTGGAGGAG
ACGATACTTCATCCTCAAGGGTAGCAAACTGTTCTTCGCCAAGAACGAGG
CGGGATCCCCCCACGGGATGATCGACCTTTCGTCGTGCATGACCGTCAAA
TCCGCGGAGCTCAAAGCCCAAAAGCGAAACGCTCTAGAAGTCTCCACCCC
TGAGACCACCTTCTTAATGTACGCGGACACGGAGAAAGAAAAAGATGACT
GGATCGGTGCAGTCGGTCGTGCCATTGTGCGGAGCTCGACCACGTACACG
CAGGAGGTGGGGGAGGGGGGAGATGACGACGACGGGAGTGATAGTGAAGA
GGACTAGGGCGGGGTTGGAACGGAAGGCGGGATGTGTTTTTTGTATAGCT
TACACAACAGCTCTAGCCAATGAGGATGATAAGAAAGAGGAGACAGACAG
AAAGAAAGGAAGCCGATGAAATGTCA back to topprotein sequence of NO07G01580.2 >NO07G01580.2-protein ID=NO07G01580.2-protein|Name=NO07G01580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MRTRFHLQHITGWLTKQSSWLKDWRRRYFILKGSKLFFAKNEAGSPHGMI
DLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRA
IVRSSTTYTQEVGEGGDDDDGSDSEED* back to topmRNA from alignment at chr7:478169..479982- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01580.2 ID=NO07G01580.2|Name=NO07G01580.2|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at chr7:478169..479982- (Nannochloropsis oceanica)
CGATGCTGCTTGCTTGTCTTGTGGGTGCGTGCGGGACGGGGGGGGAGCGT
TAGCATCAAGTACCAATACCAGACATCGTCCACGAACAAAAGCATCAAGG
CATATAGAACAAGAAGGATGTGTGTGACCAAGCAAAGCCTCAGCTAACCT
CAAAGCAGCACTAAAGCAAGGATGACCCTCGCTACGCGCAGAGCCTCCTC
TGAAATTTGCCAGCGACGACAAGAGGCCCCGCCGAGCGATATGGGCAAGC
CGTCTTGTTATTCATTGGCCGCTCCCCCACTCACATGCCTCCACACGCAT
ACCAAGCAGTCTCAACGCTCACTACCCTCCTTACTCCTATGTTTCTACAG
GCTCCGCTGGTTGTTTGGATTGCGTAGCTTTGACAGCCGCCGCGTCGTCT
TGCCACCCGTCATAGTCATCGCAGAGAGCGACAGGAACACTTGCGTCTCC
AAATCGAATAGCACTCTTAGTCATGAGGGGCACCTACATAGACCCCAATA
CAAACATCCGCTACGACACCAATAATGCGGACTTTGAAGGTACGTGGGTG
TGCTGGCCAAGCTGTTTTTTTTAAAAGCAAATCAAGGGAAGACGGTGGGG
CTGAATGCCATAAATAGGTCAGAAAACCCACCTCTCTCAAAGAACCTAGG
GTTCTGACCCAGCAGAAACGGCCCAGAGAGTATGCCTATGATCCGTAGTC
CTGCTCTGTCTTGTGCTGTGTAGAAACTGGGTCTGCTGTATGTGGTGGCT
CAGGCTCTGGTTCCTCATTCTTGGTAGCGTTGGAGAGGCCTAGAAAAAAT
TAGTCTGGCAGAATCACAGCCCAAGAAGCCAGGGATATCACGCCACTTCC
ACGACTCAGGCATAACTGGCATCAATATAGGATTGATTGCTGCTTGGCTC
CGGTTTCAGGCTTGCCCCCAAAATATGGCTCAACAGCCTGACTAAGAAGT
GAACCAAGTTGCCAGTGGTTCCTCCGACGTTTGGGACCAGTCCCTCGATG
AAGATTGTCCATAACGAGCTCTTATGCGCACCCGTTTCCATTTACAACAT
ATAACAGGGTGGTTGACAAAGCAGAGCAGCTGGCTGAAGGATTGGAGGAG
ACGATACTTCATCCTCAAGGGTAGCAAACTGTTCTTCGCCAAGGTGGGAG
GAGGGTGGGGCGGTCGAGCTGCGGAGGGTTTAAGTCGGGTGGAGGGATCA
AAATGAATAGGGGGGGGTGGAATGGAGTGCTTGTATCCCAATTAGCTTTG
CACGTAACCTCTTGGTGCGGTCGATTGGTTCTTGGTGTGGGAATGGCCAG
GGTGTGCACCGCCACACGGTCCACTTCCCACCACCTGTTGAATTATCAGT
CTCCAAGAGGGTTTCCTCCCCCCACAGCACCCGCACTTACCATCATCCAC
TCTCTCCGCTCCCCACTATCTTAATAAACAGAACGAGGCGGGATCCCCCC
ACGGGATGATCGACCTTTCGTCGTGCATGACCGTCAAATCCGCGGAGCTC
AAAGCCCAAAAGCGAAACGCTCTAGAAGTCTCCACCCCTGAGACCACCTT
CTTAATGTACGCGGACACGGAGAAAGAAAAAGATGACTGGATCGGTGCAG
TCGGTCGTGCCATTGTGCGGAGCTCGACCACGTACACGCAGGAGGTGGGG
GAGGGGGGAGATGACGACGACGGGAGTGATAGTGAAGAGGACTAGGGCGG
GGTTGGAACGGAAGGCGGGATGTGTTTTTTGTATAGCTTACACAACAGCT
CTAGCCAATGAGGATGATAAGAAAGAGGAGACAGACAGAAAGAAAGGAAG
CCGATGAAATGTCA back to topCoding sequence (CDS) from alignment at chr7:478169..479982- >NO07G01580.2 ID=NO07G01580.2|Name=NO07G01580.2|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at chr7:478169..479982- (Nannochloropsis oceanica)
ATGCGCACCCGTTTCCATTTACAACATATAACAGGGTGGTTGACAAAGCA
GAGCAGCTGGCTGAAGGATTGGAGGAGACGATACTTCATCCTCAAGGGTA
GCAAACTGTTCTTCGCCAAGAACGAGGCGGGATCCCCCCACGGGATGATC
GACCTTTCGTCGTGCATGACCGTCAAATCCGCGGAGCTCAAAGCCCAAAA
GCGAAACGCTCTAGAAGTCTCCACCCCTGAGACCACCTTCTTAATGTACG
CGGACACGGAGAAAGAAAAAGATGACTGGATCGGTGCAGTCGGTCGTGCC
ATTGTGCGGAGCTCGACCACGTACACGCAGGAGGTGGGGGAGGGGGGAGA
TGACGACGACGGGAGTGATAGTGAAGAGGACTAG back to top
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