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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:454100..455719 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01480.1 vs.
Match: XP_005853599.1 (sugar transporter [Nannochloropsis gaditana CCMP526]; XP_005855265.1 sugar transporter [Nannochloropsis gaditana CCMP526]; EKU21090.1 sugar transporter [Nannochloropsis gaditana CCMP526]; EKU22760.1 sugar transporter [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 839.0 bits (2166), Expect = 8.500e-240 Identity = 446/539 (82.75%), Postives = 481/539 (89.24%), Query Frame = 0
Query: 1 MTLASVSPRLWASAFTIGLSSLLFGYSLACLNTVITCPSKPCPKGSILTDLDLSLEEEQLATAMTILGAMIGGLFASYPNDHWGRRKSLLVNNVFFIVGGVLTAITSLDSILVGRFLLGLGTGVESMVAPVLLSEIASNQTRGAITSLHQLNITLGILISNLIGYGFVPNISGGWRYVQLFVVLPAGLQLILFWLVPESPRWLLRADRREEARDVLSHLRIRKTGDAAAQAAGAAAVEAELVALEKELGSTMKQPTAGWKETFSYGTAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGVENAFLGTVLVGVLNVFITMVSGYLVDKAGRKVLLTGGTWIMLISLLLLGGILLAENVPALAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSKAYSIFVTSNWTANLLISLVTLSLIDTLGEAVAPAGALKAKQQQMGVALLYFCFAGMCVLCLLFLYGMVPETKHEAKDGLEEHHHHACSEFAAGDADMMTEVVHCSEGHGLGDSQNTAGREEGGLGEGGKVAVTQPVSMV 540
MTL SV+PRLWASAFTIGLSSLLFGYSLACLNTVITC S PCPKGSILT+L+LSLEE+QLATAMTI+GAM+GGLFASYPNDH+GRRKSLL NN+FF++GGVLTAI SLDSILVGRFLLGLGTGVESMVAPVLLSEIASN+TRGAITSLHQLNITLGILISNLIGYGFVPN+ GGWRYVQLFVVLPA LQ++LFWLVPESPRWLLRADRRE+AR VLSHLRI K GDAAAQAAGA VEAELVALE+ELGS+MKQPTAGWKETFSYG AMRIGMLMMFFSAMTGINTVIFYSTTIFALAGVENAFLGTVLVG+LNV ITMVSGYLVDKAGRKVLLTGGTWIML+SLLLLG ILLA+ VP +AISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSKAYSIFVTSNWTANL+ISLVTLSLID LG+++A AG+ KQ+Q+GVALLY CFAGMCVLCLLFLY +VPETKH+ ++ HH SEFA D D++TEVVHC E HG EG + A QPVSMV
Sbjct: 11 MTLGSVTPRLWASAFTIGLSSLLFGYSLACLNTVITCSSTPCPKGSILTNLNLSLEEQQLATAMTIIGAMLGGLFASYPNDHFGRRKSLLFNNIFFLIGGVLTAIASLDSILVGRFLLGLGTGVESMVAPVLLSEIASNETRGAITSLHQLNITLGILISNLIGYGFVPNVDGGWRYVQLFVVLPAALQVLLFWLVPESPRWLLRADRREDARSVLSHLRICKKGDAAAQAAGAELVEAELVALEQELGSSMKQPTAGWKETFSYGKAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGVENAFLGTVLVGILNVIITMVSGYLVDKAGRKVLLTGGTWIMLVSLLLLGSILLADGVPPVAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSKAYSIFVTSNWTANLVISLVTLSLIDALGKSLASAGSSVEKQEQLGVALLYMCFAGMCVLCLLFLYFLVPETKHQHEEKAAHHHRRVSSEFAVADVDIITEVVHCVEAHG-----------EGPVDAPADAAGKQPVSMV 538
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01480.1 ID=NO07G01480.1|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp ATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCAAGCGCATTTACTAT TGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGCGTGCCTCAACACGG TCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCTCAATCCTCACCGAC CTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACGGCCATGACAATCCT TGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCCCAATGACCACTGGG GTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTTTCATCGTCGGCGGT GTGCTCACCGCCATCACCAGTTTAGACTCCATCCTCGTCGGCCGGTTCTT GCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGCCCCTGTGTTGCTTT CAGAGATTGCATCCAACCAGACCCGTGGGGCAATTACCAGCTTGCATCAA TTGAATATCACCTTGGGAATTTTGATTTCAAACTTGATCGGCTACGGCTT TGTCCCAAACATCTCAGGGGGATGGAGATATGTCCAGCTCTTCGTTGTTC TACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCGTACCTGAGTCGCCT CGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCACGAGACGTCCTGAG CCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGCGCAGGCCGCGGGGG CCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGAAAGAGCTTGGTTCA ACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACCTTTAGCTACGGGAC TGCCATGAGGATTGGTATGTTGATGATGTTCTTTAGTGCAATGACAGGGA TTAACACTGTCATTTTCTATTCGACCACGATCTTTGCGTTGGCGGGGGTC GAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTGCTGAATGTTTTTAT CACTATGGTCTCCGGATATTTGGTTGATAAGGCGGGAAGGAAGGTGCTAT TGACCGGAGGGACGTGGATCATGCTTATTAGTTTGTTGTTGCTGGGTGGG ATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATCTCGATCGTTGCTGT CGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAATTGGGATTGGGGCAG TGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCAAGATCCGGTCGAAG GCATATTCCATTTTTGTGACGAGCAATTGGACGGCTAATCTCCTTATTTC TCTTGTGACCTTGTCATTGATTGATACGCTGGGGGAGGCGGTCGCCCCTG CGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGGTGGCGTTGTTGTAT TTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTGTTTTTGTACGGGAT GGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCTGGAGGAGCACCATC ACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCGATATGATGACGGAG GTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGATAGTCAAAATACGGC GGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAAGGTTGCTGTGACGC AGCCCGTATCGATGGTTTAG back to topprotein sequence of NO07G01480.1 >NO07G01480.1-protein ID=NO07G01480.1-protein|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp MTLASVSPRLWASAFTIGLSSLLFGYSLACLNTVITCPSKPCPKGSILTD LDLSLEEEQLATAMTILGAMIGGLFASYPNDHWGRRKSLLVNNVFFIVGG VLTAITSLDSILVGRFLLGLGTGVESMVAPVLLSEIASNQTRGAITSLHQ LNITLGILISNLIGYGFVPNISGGWRYVQLFVVLPAGLQLILFWLVPESP RWLLRADRREEARDVLSHLRIRKTGDAAAQAAGAAAVEAELVALEKELGS TMKQPTAGWKETFSYGTAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGV ENAFLGTVLVGVLNVFITMVSGYLVDKAGRKVLLTGGTWIMLISLLLLGG ILLAENVPALAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSK AYSIFVTSNWTANLLISLVTLSLIDTLGEAVAPAGALKAKQQQMGVALLY FCFAGMCVLCLLFLYGMVPETKHEAKDGLEEHHHHACSEFAAGDADMMTE VVHCSEGHGLGDSQNTAGREEGGLGEGGKVAVTQPVSMV* back to topmRNA from alignment at chr7:454100..455719- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01480.1 ID=NO07G01480.1|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp|location=Sequence derived from alignment at chr7:454100..455719- (Nannochloropsis oceanica) ATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCAAGCGCATTTACTAT
TGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGCGTGCCTCAACACGG
TCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCTCAATCCTCACCGAC
CTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACGGCCATGACAATCCT
TGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCCCAATGACCACTGGG
GTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTTTCATCGTCGGCGGT
GTGCTCACCGCCATCACCAGTTTAGACTCCATCCTCGTCGGCCGGTTCTT
GCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGCCCCTGTGTTGCTTT
CAGAGATTGCATCCAACCAGACCCGTGGGGCAATTACCAGCTTGCATCAA
TTGAATATCACCTTGGGAATTTTGATTTCAAACTTGATCGGCTACGGCTT
TGTCCCAAACATCTCAGGGGGATGGAGATATGTCCAGCTCTTCGTTGTTC
TACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCGTACCTGAGTCGCCT
CGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCACGAGACGTCCTGAG
CCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGCGCAGGCCGCGGGGG
CCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGAAAGAGCTTGGTTCA
ACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACCTTTAGCTACGGGAC
TGCCATGAGGATTGGTATGTTGATGATGTTCTTTAGTGCAATGACAGGGA
TTAACACTGTCATTTTCTATTCGACCACGATCTTTGCGTTGGCGGGGGTC
GAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTGCTGAATGTTTTTAT
CACTATGGTCTCCGGATATTTGGTTGATAAGGCGGGAAGGAAGGTGCTAT
TGACCGGAGGGACGTGGATCATGCTTATTAGTTTGTTGTTGCTGGGTGGG
ATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATCTCGATCGTTGCTGT
CGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAATTGGGATTGGGGCAG
TGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCAAGATCCGGTCGAAG
GCATATTCCATTTTTGTGACGAGCAATTGGACGGCTAATCTCCTTATTTC
TCTTGTGACCTTGTCATTGATTGATACGCTGGGGGAGGCGGTCGCCCCTG
CGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGGTGGCGTTGTTGTAT
TTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTGTTTTTGTACGGGAT
GGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCTGGAGGAGCACCATC
ACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCGATATGATGACGGAG
GTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGATAGTCAAAATACGGC
GGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAAGGTTGCTGTGACGC
AGCCCGTATCGATGGTTTAG back to topCoding sequence (CDS) from alignment at chr7:454100..455719- >NO07G01480.1 ID=NO07G01480.1|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr7:454100..455719- (Nannochloropsis oceanica) ATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCAAGCGCATTTACTAT TGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGCGTGCCTCAACACGG TCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCTCAATCCTCACCGAC CTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACGGCCATGACAATCCT TGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCCCAATGACCACTGGG GTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTTTCATCGTCGGCGGT GTGCTCACCGCCATCACCAGTTTAGACTCCATCCTCGTCGGCCGGTTCTT GCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGCCCCTGTGTTGCTTT CAGAGATTGCATCCAACCAGACCCGTGGGGCAATTACCAGCTTGCATCAA TTGAATATCACCTTGGGAATTTTGATTTCAAACTTGATCGGCTACGGCTT TGTCCCAAACATCTCAGGGGGATGGAGATATGTCCAGCTCTTCGTTGTTC TACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCGTACCTGAGTCGCCT CGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCACGAGACGTCCTGAG CCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGCGCAGGCCGCGGGGG CCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGAAAGAGCTTGGTTCA ACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACCTTTAGCTACGGGAC TGCCATGAGGATTGGTATGTTGATGATGTTCTTTAGTGCAATGACAGGGA TTAACACTGTCATTTTCTATTCGACCACGATCTTTGCGTTGGCGGGGGTC GAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTGCTGAATGTTTTTAT CACTATGGTCTCCGGATATTTGGTTGATAAGGCGGGAAGGAAGGTGCTAT TGACCGGAGGGACGTGGATCATGCTTATTAGTTTGTTGTTGCTGGGTGGG ATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATCTCGATCGTTGCTGT CGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAATTGGGATTGGGGCAG TGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCAAGATCCGGTCGAAG GCATATTCCATTTTTGTGACGAGCAATTGGACGGCTAATCTCCTTATTTC TCTTGTGACCTTGTCATTGATTGATACGCTGGGGGAGGCGGTCGCCCCTG CGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGGTGGCGTTGTTGTAT TTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTGTTTTTGTACGGGAT GGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCTGGAGGAGCACCATC ACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCGATATGATGACGGAG GTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGATAGTCAAAATACGGC GGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAAGGTTGCTGTGACGC AGCCCGTATCGATGGTTTAG back to top
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