NO07G01480.1, NO07G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01480.1
Unique NameNO07G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1620
Alignment locationchr7:454100..455719 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:454100..455719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01480.1 vs.
Match: XP_005853599.1 (sugar transporter [Nannochloropsis gaditana CCMP526]; XP_005855265.1 sugar transporter [Nannochloropsis gaditana CCMP526]; EKU21090.1 sugar transporter [Nannochloropsis gaditana CCMP526]; EKU22760.1 sugar transporter [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 839.0 bits (2166), Expect = 8.500e-240
Identity = 446/539 (82.75%), Postives = 481/539 (89.24%), Query Frame = 0
Query:    1 MTLASVSPRLWASAFTIGLSSLLFGYSLACLNTVITCPSKPCPKGSILTDLDLSLEEEQLATAMTILGAMIGGLFASYPNDHWGRRKSLLVNNVFFIVGGVLTAITSLDSILVGRFLLGLGTGVESMVAPVLLSEIASNQTRGAITSLHQLNITLGILISNLIGYGFVPNISGGWRYVQLFVVLPAGLQLILFWLVPESPRWLLRADRREEARDVLSHLRIRKTGDAAAQAAGAAAVEAELVALEKELGSTMKQPTAGWKETFSYGTAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGVENAFLGTVLVGVLNVFITMVSGYLVDKAGRKVLLTGGTWIMLISLLLLGGILLAENVPALAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSKAYSIFVTSNWTANLLISLVTLSLIDTLGEAVAPAGALKAKQQQMGVALLYFCFAGMCVLCLLFLYGMVPETKHEAKDGLEEHHHHACSEFAAGDADMMTEVVHCSEGHGLGDSQNTAGREEGGLGEGGKVAVTQPVSMV 540
            MTL SV+PRLWASAFTIGLSSLLFGYSLACLNTVITC S PCPKGSILT+L+LSLEE+QLATAMTI+GAM+GGLFASYPNDH+GRRKSLL NN+FF++GGVLTAI SLDSILVGRFLLGLGTGVESMVAPVLLSEIASN+TRGAITSLHQLNITLGILISNLIGYGFVPN+ GGWRYVQLFVVLPA LQ++LFWLVPESPRWLLRADRRE+AR VLSHLRI K GDAAAQAAGA  VEAELVALE+ELGS+MKQPTAGWKETFSYG AMRIGMLMMFFSAMTGINTVIFYSTTIFALAGVENAFLGTVLVG+LNV ITMVSGYLVDKAGRKVLLTGGTWIML+SLLLLG ILLA+ VP +AISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSKAYSIFVTSNWTANL+ISLVTLSLID LG+++A AG+   KQ+Q+GVALLY CFAGMCVLCLLFLY +VPETKH+ ++    HH    SEFA  D D++TEVVHC E HG           EG +      A  QPVSMV
Sbjct:   11 MTLGSVTPRLWASAFTIGLSSLLFGYSLACLNTVITCSSTPCPKGSILTNLNLSLEEQQLATAMTIIGAMLGGLFASYPNDHFGRRKSLLFNNIFFLIGGVLTAIASLDSILVGRFLLGLGTGVESMVAPVLLSEIASNETRGAITSLHQLNITLGILISNLIGYGFVPNVDGGWRYVQLFVVLPAALQVLLFWLVPESPRWLLRADRREDARSVLSHLRICKKGDAAAQAAGAELVEAELVALEQELGSSMKQPTAGWKETFSYGKAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGVENAFLGTVLVGILNVIITMVSGYLVDKAGRKVLLTGGTWIMLVSLLLLGSILLADGVPPVAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSKAYSIFVTSNWTANLVISLVTLSLIDALGKSLASAGSSVEKQEQLGVALLYMCFAGMCVLCLLFLYFLVPETKHQHEEKAAHHHRRVSSEFAVADVDIITEVVHCVEAHG-----------EGPVDAPADAAGKQPVSMV 538          
The following BLAST results are available for this feature:
BLAST of NO07G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853599.18.500e-24082.75sugar transporter [Nannochloropsis gaditana CCMP52... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01480NO07G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01480.1NO07G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01480.1.cds1NO07G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01480.1 ID=NO07G01480.1|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp
ATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCAAGCGCATTTACTAT
TGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGCGTGCCTCAACACGG
TCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCTCAATCCTCACCGAC
CTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACGGCCATGACAATCCT
TGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCCCAATGACCACTGGG
GTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTTTCATCGTCGGCGGT
GTGCTCACCGCCATCACCAGTTTAGACTCCATCCTCGTCGGCCGGTTCTT
GCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGCCCCTGTGTTGCTTT
CAGAGATTGCATCCAACCAGACCCGTGGGGCAATTACCAGCTTGCATCAA
TTGAATATCACCTTGGGAATTTTGATTTCAAACTTGATCGGCTACGGCTT
TGTCCCAAACATCTCAGGGGGATGGAGATATGTCCAGCTCTTCGTTGTTC
TACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCGTACCTGAGTCGCCT
CGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCACGAGACGTCCTGAG
CCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGCGCAGGCCGCGGGGG
CCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGAAAGAGCTTGGTTCA
ACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACCTTTAGCTACGGGAC
TGCCATGAGGATTGGTATGTTGATGATGTTCTTTAGTGCAATGACAGGGA
TTAACACTGTCATTTTCTATTCGACCACGATCTTTGCGTTGGCGGGGGTC
GAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTGCTGAATGTTTTTAT
CACTATGGTCTCCGGATATTTGGTTGATAAGGCGGGAAGGAAGGTGCTAT
TGACCGGAGGGACGTGGATCATGCTTATTAGTTTGTTGTTGCTGGGTGGG
ATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATCTCGATCGTTGCTGT
CGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAATTGGGATTGGGGCAG
TGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCAAGATCCGGTCGAAG
GCATATTCCATTTTTGTGACGAGCAATTGGACGGCTAATCTCCTTATTTC
TCTTGTGACCTTGTCATTGATTGATACGCTGGGGGAGGCGGTCGCCCCTG
CGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGGTGGCGTTGTTGTAT
TTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTGTTTTTGTACGGGAT
GGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCTGGAGGAGCACCATC
ACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCGATATGATGACGGAG
GTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGATAGTCAAAATACGGC
GGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAAGGTTGCTGTGACGC
AGCCCGTATCGATGGTTTAG
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protein sequence of NO07G01480.1

>NO07G01480.1-protein ID=NO07G01480.1-protein|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MTLASVSPRLWASAFTIGLSSLLFGYSLACLNTVITCPSKPCPKGSILTD
LDLSLEEEQLATAMTILGAMIGGLFASYPNDHWGRRKSLLVNNVFFIVGG
VLTAITSLDSILVGRFLLGLGTGVESMVAPVLLSEIASNQTRGAITSLHQ
LNITLGILISNLIGYGFVPNISGGWRYVQLFVVLPAGLQLILFWLVPESP
RWLLRADRREEARDVLSHLRIRKTGDAAAQAAGAAAVEAELVALEKELGS
TMKQPTAGWKETFSYGTAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGV
ENAFLGTVLVGVLNVFITMVSGYLVDKAGRKVLLTGGTWIMLISLLLLGG
ILLAENVPALAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSK
AYSIFVTSNWTANLLISLVTLSLIDTLGEAVAPAGALKAKQQQMGVALLY
FCFAGMCVLCLLFLYGMVPETKHEAKDGLEEHHHHACSEFAAGDADMMTE
VVHCSEGHGLGDSQNTAGREEGGLGEGGKVAVTQPVSMV*
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mRNA from alignment at chr7:454100..455719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01480.1 ID=NO07G01480.1|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp|location=Sequence derived from alignment at chr7:454100..455719- (Nannochloropsis oceanica)
ATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCAAGCGCATTTACTAT TGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGCGTGCCTCAACACGG TCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCTCAATCCTCACCGAC CTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACGGCCATGACAATCCT TGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCCCAATGACCACTGGG GTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTTTCATCGTCGGCGGT GTGCTCACCGCCATCACCAGTTTAGACTCCATCCTCGTCGGCCGGTTCTT GCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGCCCCTGTGTTGCTTT CAGAGATTGCATCCAACCAGACCCGTGGGGCAATTACCAGCTTGCATCAA TTGAATATCACCTTGGGAATTTTGATTTCAAACTTGATCGGCTACGGCTT TGTCCCAAACATCTCAGGGGGATGGAGATATGTCCAGCTCTTCGTTGTTC TACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCGTACCTGAGTCGCCT CGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCACGAGACGTCCTGAG CCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGCGCAGGCCGCGGGGG CCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGAAAGAGCTTGGTTCA ACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACCTTTAGCTACGGGAC TGCCATGAGGATTGGTATGTTGATGATGTTCTTTAGTGCAATGACAGGGA TTAACACTGTCATTTTCTATTCGACCACGATCTTTGCGTTGGCGGGGGTC GAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTGCTGAATGTTTTTAT CACTATGGTCTCCGGATATTTGGTTGATAAGGCGGGAAGGAAGGTGCTAT TGACCGGAGGGACGTGGATCATGCTTATTAGTTTGTTGTTGCTGGGTGGG ATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATCTCGATCGTTGCTGT CGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAATTGGGATTGGGGCAG TGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCAAGATCCGGTCGAAG GCATATTCCATTTTTGTGACGAGCAATTGGACGGCTAATCTCCTTATTTC TCTTGTGACCTTGTCATTGATTGATACGCTGGGGGAGGCGGTCGCCCCTG CGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGGTGGCGTTGTTGTAT TTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTGTTTTTGTACGGGAT GGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCTGGAGGAGCACCATC ACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCGATATGATGACGGAG GTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGATAGTCAAAATACGGC GGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAAGGTTGCTGTGACGC AGCCCGTATCGATGGTTTAG
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Coding sequence (CDS) from alignment at chr7:454100..455719-

>NO07G01480.1 ID=NO07G01480.1|Name=NO07G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr7:454100..455719- (Nannochloropsis oceanica)
ATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCAAGCGCATTTACTAT
TGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGCGTGCCTCAACACGG
TCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCTCAATCCTCACCGAC
CTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACGGCCATGACAATCCT
TGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCCCAATGACCACTGGG
GTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTTTCATCGTCGGCGGT
GTGCTCACCGCCATCACCAGTTTAGACTCCATCCTCGTCGGCCGGTTCTT
GCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGCCCCTGTGTTGCTTT
CAGAGATTGCATCCAACCAGACCCGTGGGGCAATTACCAGCTTGCATCAA
TTGAATATCACCTTGGGAATTTTGATTTCAAACTTGATCGGCTACGGCTT
TGTCCCAAACATCTCAGGGGGATGGAGATATGTCCAGCTCTTCGTTGTTC
TACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCGTACCTGAGTCGCCT
CGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCACGAGACGTCCTGAG
CCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGCGCAGGCCGCGGGGG
CCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGAAAGAGCTTGGTTCA
ACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACCTTTAGCTACGGGAC
TGCCATGAGGATTGGTATGTTGATGATGTTCTTTAGTGCAATGACAGGGA
TTAACACTGTCATTTTCTATTCGACCACGATCTTTGCGTTGGCGGGGGTC
GAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTGCTGAATGTTTTTAT
CACTATGGTCTCCGGATATTTGGTTGATAAGGCGGGAAGGAAGGTGCTAT
TGACCGGAGGGACGTGGATCATGCTTATTAGTTTGTTGTTGCTGGGTGGG
ATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATCTCGATCGTTGCTGT
CGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAATTGGGATTGGGGCAG
TGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCAAGATCCGGTCGAAG
GCATATTCCATTTTTGTGACGAGCAATTGGACGGCTAATCTCCTTATTTC
TCTTGTGACCTTGTCATTGATTGATACGCTGGGGGAGGCGGTCGCCCCTG
CGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGGTGGCGTTGTTGTAT
TTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTGTTTTTGTACGGGAT
GGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCTGGAGGAGCACCATC
ACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCGATATGATGACGGAG
GTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGATAGTCAAAATACGGC
GGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAAGGTTGCTGTGACGC
AGCCCGTATCGATGGTTTAG
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Synonyms
Publications