NO07G01470.1, NO07G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01470.1
Unique NameNO07G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1284
Alignment locationchr7:451817..453100 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:451817..453100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01470.1 vs.
Match: EWM27271.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 347.1 bits (889), Expect = 8.100e-92
Identity = 176/218 (80.73%), Postives = 192/218 (88.07%), Query Frame = 0 
Query:    1 MAAVTTAAAAAATAAARLTLDSSSRLTGVAKALLAEDWARVDKRVPHLLARLTERGAHQCWHKHGTFKQHLLGVWKILALWEQPQALARCGLFHSAYSNSYVNLAIFKAGVDRGLVQEDCGVEAEELIYKFCVVDRQKIIVDTMFPMDRVPAEGLTVQHIHTGEPVHLSSEMLGQLLVMTMADVADQQYGWQDDLFGDAQWRPRDAFSSATSKSYKET 219
            MAA + A+A AAT+A       SSR T VAKALLAEDWARVD RVPHLLARLTERGAHQCWHKHGTFKQHLLGVWKIL+LWEQPQ LARCGL+HSAYSNSYVNLAIFKAGVDR LVQ+DCG EAEELIYKFCVVDRQKIIVDT+FPM+RVPAEGL V HIHTG+ VHLSS++LGQLLVMTMADVADQQYGWQDDLFGDAQWRP      A+++ ++ET
Sbjct:    1 MAASSAASAVAATSARPYI---SSRFTEVAKALLAEDWARVDTRVPHLLARLTERGAHQCWHKHGTFKQHLLGVWKILSLWEQPQTLARCGLYHSAYSNSYVNLAIFKAGVDRDLVQKDCGKEAEELIYKFCVVDRQKIIVDTLFPMERVPAEGLVVPHIHTGDSVHLSSKVLGQLLVMTMADVADQQYGWQDDLFGDAQWRP----CQASNEDHEET 211
The following BLAST results are available for this feature:
BLAST of NO07G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27271.18.100e-9280.73Tetratricopeptide-like helical [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01470NO07G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01470.1NO07G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01470.1.cds1NO07G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01470.1 ID=NO07G01470.1|Name=NO07G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp
ATGGCCGCTGTCACGACCGCAGCCGCTGCAGCAGCAACTGCAGCAGCTCG
GCTTACTTTGGACTCCTCGTCGCGCCTCACTGGGGTGGCCAAGGCATTGC
TGGCGGAAGACTGGGCGCGGGTCGATAAGCGGGTGCCCCATCTCCTGGCC
CGGCTCACGGAACGTGGCGCCCACCAATGCTGGCATAAGCACGGGACATT
TAAGCAGCACTTGCTGGGCGTCTGGAAGATCTTGGCGCTATGGGAGCAGC
CTCAAGCGTTGGCACGCTGTGGCCTTTTTCATTCTGCCTATTCCAACTCT
TACGTCAACCTGGCCATCTTCAAAGCCGGCGTTGATAGGGGCTTGGTGCA
AGAGGATTGCGGGGTCGAAGCCGAGGAGCTCATATACAAGTTCTGCGTGG
TAGACCGGCAGAAAATAATCGTTGATACCATGTTTCCCATGGATCGGGTA
CCCGCTGAAGGGTTAACAGTGCAACACATTCATACGGGGGAGCCTGTGCA
TTTGTCGAGCGAGATGCTAGGGCAGTTATTGGTTATGACCATGGCAGACG
TGGCCGACCAGCAATACGGGTGGCAAGACGACTTGTTTGGTGATGCACAG
TGGCGGCCTCGTGATGCCTTCAGCAGCGCGACCAGTAAGAGCTACAAGGA
GACCACAGATGGTGTGGTAGAAAGCACTAGCAACAATAGCTACAACAAAA
GCGGCAGTAACAACAGCAACGACAACAATAACAACAACAAGAACAAGATT
AATAGCAACGCAGAGGAGCAAGAAGCTGTCATGCATCCCTACACTCTCTG
GCCTGGTCTCTCGAAGCCCGGTTTATGGATGTACTTCGTCAGCCAGCTCG
CTGCCCTGGCCCGCACGTGTCCCATGCCTGTCCGTCCCCCCGTCTTGGAC
CAGGGACGGTTCCTCCTCGATCGTACCGCGGAACGTCAAGCGCGTGATTT
GTATTGGGAAGTGATTTCGGAAGACCCGCGGGATAAGAGTAAAGTGGACT
GTAACATCGCCAAGCTGACACATGCCCTAGTCCTCAATCCTTATCTAGCC
GAGCCGCACACCTTGCTAGCGCAATGCTATTTGATCAAGGGCGATTTCCC
AGCAGCCTTGACAGCAGCTGATAAGGCAGTTGACTTGTTTCTGCAATGGG
GTACGAATTGGGATAAGCGCGTGTCTTTTGAGGCTTGGATGGCTTGGACT
CGAGTCTTGCTTCAGCATGCAGAGAATCGTACGCCGTGGCATGAAAACTC
GTGGGGGGTGATTAATTTGGGCTTGGTACGGTGA
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protein sequence of NO07G01470.1

>NO07G01470.1-protein ID=NO07G01470.1-protein|Name=NO07G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MAAVTTAAAAAATAAARLTLDSSSRLTGVAKALLAEDWARVDKRVPHLLA
RLTERGAHQCWHKHGTFKQHLLGVWKILALWEQPQALARCGLFHSAYSNS
YVNLAIFKAGVDRGLVQEDCGVEAEELIYKFCVVDRQKIIVDTMFPMDRV
PAEGLTVQHIHTGEPVHLSSEMLGQLLVMTMADVADQQYGWQDDLFGDAQ
WRPRDAFSSATSKSYKETTDGVVESTSNNSYNKSGSNNSNDNNNNNKNKI
NSNAEEQEAVMHPYTLWPGLSKPGLWMYFVSQLAALARTCPMPVRPPVLD
QGRFLLDRTAERQARDLYWEVISEDPRDKSKVDCNIAKLTHALVLNPYLA
EPHTLLAQCYLIKGDFPAALTAADKAVDLFLQWGTNWDKRVSFEAWMAWT
RVLLQHAENRTPWHENSWGVINLGLVR*
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mRNA from alignment at chr7:451817..453100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01470.1 ID=NO07G01470.1|Name=NO07G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp|location=Sequence derived from alignment at chr7:451817..453100+ (Nannochloropsis oceanica)
ATGGCCGCTGTCACGACCGCAGCCGCTGCAGCAGCAACTGCAGCAGCTCG
GCTTACTTTGGACTCCTCGTCGCGCCTCACTGGGGTGGCCAAGGCATTGC
TGGCGGAAGACTGGGCGCGGGTCGATAAGCGGGTGCCCCATCTCCTGGCC
CGGCTCACGGAACGTGGCGCCCACCAATGCTGGCATAAGCACGGGACATT
TAAGCAGCACTTGCTGGGCGTCTGGAAGATCTTGGCGCTATGGGAGCAGC
CTCAAGCGTTGGCACGCTGTGGCCTTTTTCATTCTGCCTATTCCAACTCT
TACGTCAACCTGGCCATCTTCAAAGCCGGCGTTGATAGGGGCTTGGTGCA
AGAGGATTGCGGGGTCGAAGCCGAGGAGCTCATATACAAGTTCTGCGTGG
TAGACCGGCAGAAAATAATCGTTGATACCATGTTTCCCATGGATCGGGTA
CCCGCTGAAGGGTTAACAGTGCAACACATTCATACGGGGGAGCCTGTGCA
TTTGTCGAGCGAGATGCTAGGGCAGTTATTGGTTATGACCATGGCAGACG
TGGCCGACCAGCAATACGGGTGGCAAGACGACTTGTTTGGTGATGCACAG
TGGCGGCCTCGTGATGCCTTCAGCAGCGCGACCAGTAAGAGCTACAAGGA
GACCACAGATGGTGTGGTAGAAAGCACTAGCAACAATAGCTACAACAAAA
GCGGCAGTAACAACAGCAACGACAACAATAACAACAACAAGAACAAGATT
AATAGCAACGCAGAGGAGCAAGAAGCTGTCATGCATCCCTACACTCTCTG
GCCTGGTCTCTCGAAGCCCGGTTTATGGATGTACTTCGTCAGCCAGCTCG
CTGCCCTGGCCCGCACGTGTCCCATGCCTGTCCGTCCCCCCGTCTTGGAC
CAGGGACGGTTCCTCCTCGATCGTACCGCGGAACGTCAAGCGCGTGATTT
GTATTGGGAAGTGATTTCGGAAGACCCGCGGGATAAGAGTAAAGTGGACT
GTAACATCGCCAAGCTGACACATGCCCTAGTCCTCAATCCTTATCTAGCC
GAGCCGCACACCTTGCTAGCGCAATGCTATTTGATCAAGGGCGATTTCCC
AGCAGCCTTGACAGCAGCTGATAAGGCAGTTGACTTGTTTCTGCAATGGG
GTACGAATTGGGATAAGCGCGTGTCTTTTGAGGCTTGGATGGCTTGGACT
CGAGTCTTGCTTCAGCATGCAGAGAATCGTACGCCGTGGCATGAAAACTC
GTGGGGGGTGATTAATTTGGGCTTGGTACGGTGA
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Coding sequence (CDS) from alignment at chr7:451817..453100+

>NO07G01470.1 ID=NO07G01470.1|Name=NO07G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr7:451817..453100+ (Nannochloropsis oceanica)
ATGGCCGCTGTCACGACCGCAGCCGCTGCAGCAGCAACTGCAGCAGCTCG
GCTTACTTTGGACTCCTCGTCGCGCCTCACTGGGGTGGCCAAGGCATTGC
TGGCGGAAGACTGGGCGCGGGTCGATAAGCGGGTGCCCCATCTCCTGGCC
CGGCTCACGGAACGTGGCGCCCACCAATGCTGGCATAAGCACGGGACATT
TAAGCAGCACTTGCTGGGCGTCTGGAAGATCTTGGCGCTATGGGAGCAGC
CTCAAGCGTTGGCACGCTGTGGCCTTTTTCATTCTGCCTATTCCAACTCT
TACGTCAACCTGGCCATCTTCAAAGCCGGCGTTGATAGGGGCTTGGTGCA
AGAGGATTGCGGGGTCGAAGCCGAGGAGCTCATATACAAGTTCTGCGTGG
TAGACCGGCAGAAAATAATCGTTGATACCATGTTTCCCATGGATCGGGTA
CCCGCTGAAGGGTTAACAGTGCAACACATTCATACGGGGGAGCCTGTGCA
TTTGTCGAGCGAGATGCTAGGGCAGTTATTGGTTATGACCATGGCAGACG
TGGCCGACCAGCAATACGGGTGGCAAGACGACTTGTTTGGTGATGCACAG
TGGCGGCCTCGTGATGCCTTCAGCAGCGCGACCAGTAAGAGCTACAAGGA
GACCACAGATGGTGTGGTAGAAAGCACTAGCAACAATAGCTACAACAAAA
GCGGCAGTAACAACAGCAACGACAACAATAACAACAACAAGAACAAGATT
AATAGCAACGCAGAGGAGCAAGAAGCTGTCATGCATCCCTACACTCTCTG
GCCTGGTCTCTCGAAGCCCGGTTTATGGATGTACTTCGTCAGCCAGCTCG
CTGCCCTGGCCCGCACGTGTCCCATGCCTGTCCGTCCCCCCGTCTTGGAC
CAGGGACGGTTCCTCCTCGATCGTACCGCGGAACGTCAAGCGCGTGATTT
GTATTGGGAAGTGATTTCGGAAGACCCGCGGGATAAGAGTAAAGTGGACT
GTAACATCGCCAAGCTGACACATGCCCTAGTCCTCAATCCTTATCTAGCC
GAGCCGCACACCTTGCTAGCGCAATGCTATTTGATCAAGGGCGATTTCCC
AGCAGCCTTGACAGCAGCTGATAAGGCAGTTGACTTGTTTCTGCAATGGG
GTACGAATTGGGATAAGCGCGTGTCTTTTGAGGCTTGGATGGCTTGGACT
CGAGTCTTGCTTCAGCATGCAGAGAATCGTACGCCGTGGCATGAAAACTC
GTGGGGGGTGATTAATTTGGGCTTGGTACGGTGA
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Synonyms
Publications