NO07G01440.1, NO07G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01440.1
Unique NameNO07G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1289
Alignment locationchr7:439766..441054 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:439766..441054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01440.1 vs.
Match: EWM27244.1 (Six-bladed beta-propeller TolB-like protein [Nannochloropsis gaditana])

HSP 1 Score: 448.4 bits (1152), Expect = 1.900e-122
Identity = 210/310 (67.74%), Postives = 253/310 (81.61%), Query Frame = 0
Query:    7 LLAGVLLSFMGQTRACLGPPYLYLTMHGGEDDGDVNQVYIYSRDGCPLGEALEEYTELNELRGMTLWGDSILLANANRLDSFIVQYKGACRSMESMKEMRVIVPFGTPGIDHPYGVTTDRIRYLYVSTQGSNSVYRYYLTTGEAAPVSPALASEGVQDDDYPGLFAQFDQDKDGTRNVAWHPDQRLLFVANKDEGVVVLDEDGYELGRLNADKPISVSFCDGRDSIFVSSKGDDSVSEWDPWTFELVGKWTDRKLSHPAGLVCHEGSLFVVSQDENSIVEVDLESGKMWVVVDKLDDKGEQLILSHTNRC 317
            LL G+L +  G   A LGPPYLY+TMHGGED G VNQVYIYSR G  LGEALEE T+LNELRGM LWGDS+LLANANR +SF+ Q++GAC   E MK+MRVIVP  TPGIDHPYGVTTD  R+LYVSTQG+N+VYR+YLTTGE+ P++PALA++G + DD+PGLFAQFD + DGTR + WHP ++LLFVANKD GVV L+EDGY  G L+AD+PI+VS+C  RDSIFVSSKGDDSVSEW+P + + + KWT   L+HPAGL C EGS+FVVSQDE +I+E+DLE GK+ V+V+ L DKGEQ+ILSH   C
Sbjct:    7 LLVGIL-TLSGLINANLGPPYLYVTMHGGEDKGAVNQVYIYSRAGHALGEALEEKTDLNELRGMVLWGDSMLLANANRKNSFVAQFQGACLETEKMKQMRVIVPKDTPGIDHPYGVTTDNSRFLYVSTQGTNAVYRFYLTTGESGPIAPALAAQGAKQDDFPGLFAQFDPESDGTRGITWHPGRKLLFVANKDIGVVALNEDGYVKGILDADEPIAVSYCPARDSIFVSSKGDDSVSEWNPHSLKRMKKWTSHLLAHPAGLACFEGSVFVVSQDEGTILEIDLEGGKVRVLVEDLPDKGEQIILSHAQSC 315          
The following BLAST results are available for this feature:
BLAST of NO07G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27244.11.900e-12267.74Six-bladed beta-propeller TolB-like protein [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01440NO07G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01440.1NO07G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01440.1.cds1NO07G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01440.1 ID=NO07G01440.1|Name=NO07G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp
AGGAGGGCCGCCAACTGGTCCTAGTCAGTATCGAAAGTGGCCGGCACACA
AGCGGCCACCAAAAATGCGGGCGCCATCCTGGCTACTTGCCGGCGTTCTT
CTTTCCTTTATGGGACAGACAAGGGCGTGCTTGGGCCCTCCGTACCTGTA
CTTGACCATGCATGGAGGCGAAGATGATGGAGATGTAAATCAAGTCTACA
TCTACTCGCGAGATGGATGCCCTCTCGGCGAAGCACTAGAGGAATACACG
GAGCTCAACGAGTTACGGGGGATGACCTTGTGGGGGGATTCCATCCTACT
AGCGAATGCTAATCGGCTAGATTCATTTATCGTGCAATACAAGGGGGCCT
GCCGTAGCATGGAGAGCATGAAAGAAATGCGTGTGATCGTGCCATTTGGA
ACGCCCGGGATCGACCATCCTTACGGCGTTACTACTGATCGAATACGTTA
CCTGTATGTGTCAACGCAAGGTAGCAATAGCGTTTATCGATACTATCTTA
CCACGGGAGAAGCAGCACCAGTCTCGCCCGCGTTGGCGTCCGAGGGTGTA
CAAGATGATGACTACCCGGGACTGTTCGCTCAATTTGATCAGGACAAGGA
TGGGACGCGCAATGTGGCGTGGCACCCGGATCAAAGGCTTTTGTTTGTTG
CGAATAAAGACGAAGGGGTGGTAGTGTTGGATGAGGATGGATATGAGCTG
GGAAGATTAAATGCAGATAAGCCGATTTCGGTGTCATTCTGTGACGGGCG
GGATTCAATTTTTGTTAGTAGTAAAGGGGATGACAGTGTGAGTGAGTGGG
ATCCGTGGACGTTTGAATTGGTGGGTAAGTGGACGGATCGGAAGTTAAGC
CACCCAGCGGGATTGGTTTGTCACGAAGGAAGTTTGTTTGTCGTATCGCA
GGATGAAAATTCGATAGTGGAGGTGGATTTGGAGAGTGGGAAGATGTGGG
TAGTGGTTGACAAGCTGGACGATAAGGGGGAGCAGTTGATTTTGAGTCAT
ACCAATCGGTGTTAAGTATAAAAGCAACTGTTTCGAAGAACAGGAGGGTG
AGGAAAAGAAGGAGAGGTGTGATACGTTGGAGGGATTTGAATGAATTGTG
TATGGTAGGATCCAGCATCGGCATGACTGGAAAAAAGGACTGTGTCATGG
CACAGTACATTGAAATGCTACGAAACAGCACTGAAATTTACAGACCGTCG
AGTCATTGAAGTGAGGAGCAGGACTGACAGGAATGATACTTCGATGAGAA
AATGAAAACAATATGAAGGACGAGCCACCTGTAACATTA
back to top

protein sequence of NO07G01440.1

>NO07G01440.1-protein ID=NO07G01440.1-protein|Name=NO07G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MRAPSWLLAGVLLSFMGQTRACLGPPYLYLTMHGGEDDGDVNQVYIYSRD
GCPLGEALEEYTELNELRGMTLWGDSILLANANRLDSFIVQYKGACRSME
SMKEMRVIVPFGTPGIDHPYGVTTDRIRYLYVSTQGSNSVYRYYLTTGEA
APVSPALASEGVQDDDYPGLFAQFDQDKDGTRNVAWHPDQRLLFVANKDE
GVVVLDEDGYELGRLNADKPISVSFCDGRDSIFVSSKGDDSVSEWDPWTF
ELVGKWTDRKLSHPAGLVCHEGSLFVVSQDENSIVEVDLESGKMWVVVDK
LDDKGEQLILSHTNRC*
back to top

mRNA from alignment at chr7:439766..441054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01440.1 ID=NO07G01440.1|Name=NO07G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp|location=Sequence derived from alignment at chr7:439766..441054- (Nannochloropsis oceanica)
AGGAGGGCCGCCAACTGGTCCTAGTCAGTATCGAAAGTGGCCGGCACACA AGCGGCCACCAAAAATGCGGGCGCCATCCTGGCTACTTGCCGGCGTTCTT CTTTCCTTTATGGGACAGACAAGGGCGTGCTTGGGCCCTCCGTACCTGTA CTTGACCATGCATGGAGGCGAAGATGATGGAGATGTAAATCAAGTCTACA TCTACTCGCGAGATGGATGCCCTCTCGGCGAAGCACTAGAGGAATACACG GAGCTCAACGAGTTACGGGGGATGACCTTGTGGGGGGATTCCATCCTACT AGCGAATGCTAATCGGCTAGATTCATTTATCGTGCAATACAAGGGGGCCT GCCGTAGCATGGAGAGCATGAAAGAAATGCGTGTGATCGTGCCATTTGGA ACGCCCGGGATCGACCATCCTTACGGCGTTACTACTGATCGAATACGTTA CCTGTATGTGTCAACGCAAGGTAGCAATAGCGTTTATCGATACTATCTTA CCACGGGAGAAGCAGCACCAGTCTCGCCCGCGTTGGCGTCCGAGGGTGTA CAAGATGATGACTACCCGGGACTGTTCGCTCAATTTGATCAGGACAAGGA TGGGACGCGCAATGTGGCGTGGCACCCGGATCAAAGGCTTTTGTTTGTTG CGAATAAAGACGAAGGGGTGGTAGTGTTGGATGAGGATGGATATGAGCTG GGAAGATTAAATGCAGATAAGCCGATTTCGGTGTCATTCTGTGACGGGCG GGATTCAATTTTTGTTAGTAGTAAAGGGGATGACAGTGTGAGTGAGTGGG ATCCGTGGACGTTTGAATTGGTGGGTAAGTGGACGGATCGGAAGTTAAGC CACCCAGCGGGATTGGTTTGTCACGAAGGAAGTTTGTTTGTCGTATCGCA GGATGAAAATTCGATAGTGGAGGTGGATTTGGAGAGTGGGAAGATGTGGG TAGTGGTTGACAAGCTGGACGATAAGGGGGAGCAGTTGATTTTGAGTCAT ACCAATCGGTGTTAAGTATAAAAGCAACTGTTTCGAAGAACAGGAGGGTG AGGAAAAGAAGGAGAGGTGTGATACGTTGGAGGGATTTGAATGAATTGTG TATGGTAGGATCCAGCATCGGCATGACTGGAAAAAAGGACTGTGTCATGG CACAGTACATTGAAATGCTACGAAACAGCACTGAAATTTACAGACCGTCG AGTCATTGAAGTGAGGAGCAGGACTGACAGGAATGATACTTCGATGAGAA AATGAAAACAATATGAAGGACGAGCCACCTGTAACATTA
back to top

Coding sequence (CDS) from alignment at chr7:439766..441054-

>NO07G01440.1 ID=NO07G01440.1|Name=NO07G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr7:439766..441054- (Nannochloropsis oceanica)
ATGCGGGCGCCATCCTGGCTACTTGCCGGCGTTCTTCTTTCCTTTATGGG
ACAGACAAGGGCGTGCTTGGGCCCTCCGTACCTGTACTTGACCATGCATG
GAGGCGAAGATGATGGAGATGTAAATCAAGTCTACATCTACTCGCGAGAT
GGATGCCCTCTCGGCGAAGCACTAGAGGAATACACGGAGCTCAACGAGTT
ACGGGGGATGACCTTGTGGGGGGATTCCATCCTACTAGCGAATGCTAATC
GGCTAGATTCATTTATCGTGCAATACAAGGGGGCCTGCCGTAGCATGGAG
AGCATGAAAGAAATGCGTGTGATCGTGCCATTTGGAACGCCCGGGATCGA
CCATCCTTACGGCGTTACTACTGATCGAATACGTTACCTGTATGTGTCAA
CGCAAGGTAGCAATAGCGTTTATCGATACTATCTTACCACGGGAGAAGCA
GCACCAGTCTCGCCCGCGTTGGCGTCCGAGGGTGTACAAGATGATGACTA
CCCGGGACTGTTCGCTCAATTTGATCAGGACAAGGATGGGACGCGCAATG
TGGCGTGGCACCCGGATCAAAGGCTTTTGTTTGTTGCGAATAAAGACGAA
GGGGTGGTAGTGTTGGATGAGGATGGATATGAGCTGGGAAGATTAAATGC
AGATAAGCCGATTTCGGTGTCATTCTGTGACGGGCGGGATTCAATTTTTG
TTAGTAGTAAAGGGGATGACAGTGTGAGTGAGTGGGATCCGTGGACGTTT
GAATTGGTGGGTAAGTGGACGGATCGGAAGTTAAGCCACCCAGCGGGATT
GGTTTGTCACGAAGGAAGTTTGTTTGTCGTATCGCAGGATGAAAATTCGA
TAGTGGAGGTGGATTTGGAGAGTGGGAAGATGTGGGTAGTGGTTGACAAG
CTGGACGATAAGGGGGAGCAGTTGATTTTGAGTCATACCAATCGGTGTTA
A
back to top
Synonyms
Publications