NO07G01410.1, NO07G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01410.1
Unique NameNO07G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length976
Alignment locationchr7:434521..435939 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:434521..435939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01410.1 vs.
Match: EWM27240.1 (mitochondrial protein [Nannochloropsis gaditana])

HSP 1 Score: 262.3 bits (669), Expect = 1.200e-66
Identity = 136/192 (70.83%), Postives = 157/192 (81.77%), Query Frame = 0 
Query:    6 PRALLLTAKAARRS---LASATPTAVTLIRALSSASHTNPPPSPDLTPDQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLYRSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIINGAMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKDRTGMI 195
            P A LL + AARRS   L +A  TA    R LSS++H+ PPPSP+LTP Q+RRIGERTK+QL+DHL+LKT+VP  SLDP+AP GPVD + IRRKRLLYRSKQRGWLEVDLLLGSWAAENV +L+  E DEYEK+LN ETIDIFN++NGA+ PP  L+GSKIL RLQEYA SSPFG AS RTYE VKDRTG+I
Sbjct:    4 PCAGLLFSSAARRSIYGLRNAVVTAFFDTRTLSSSAHSKPPPSPELTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSGPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVKDRTGLI 195
The following BLAST results are available for this feature:
BLAST of NO07G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27240.11.200e-6670.83mitochondrial protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01410NO07G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01410.1NO07G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01410.1.cds1NO07G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01410.1.cds2NO07G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01410.1 ID=NO07G01410.1|Name=NO07G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
GTGGTCACAAGCGCTTTCCTGTGGTCTTTATTGAGGTGAAATTCCGTTGC
GCTTCACCTCCTGGCTGCTGTCTGCGTCACCCTCCCTTCTTCCTTTTTAT
TTTATTTATTTATATATTCTCTATTAGGGTTCCGATTACACACATCATCA
CCACTCGGTCTCTTTCCACAAATTCTATGCATACAGGAAACACCTCTAGC
TACCCGGCTCGCAACTGCCCTGCTGCGTACGCATCGTCACGCAATGTTAG
TCATGCAGCCTCGTGCCCTTCTCCTCACTGCCAAGGCGGCGCGTCGTAGT
CTAGCGAGTGCCACACCCACTGCAGTGACCTTAATACGCGCCCTTTCTTC
GGCCTCGCACACGAATCCGCCGCCTTCACCCGACCTGACCCCGGACCAGA
TCCGTCGCATCGGCGAACGTACTAAATCGCAACTCGAAGACCATCTTAAG
CTCAAAACGGAAGTGCCCGCATATAGCCTTGACCCCTCCGCACCCGCAGG
GCCTGTGGACGCTAACCACATCCGCCGTAAGCGCCTCCTTTACCGCAGCA
AACAAAGGGGATGGCTCGAAGTTGACCTCTTGTTGGGGAGCTGGGCGGCG
GAGAATGTTTTTACACTGACGGTGGCCGAATGTGATGAGTATGAGAAGCT
CTTGAATCAAGAAACGATCGATATCTTCAATATCATCAATGGTGCAATGC
CCCCGCCGGTGGAGCTGGAAGGGTCGAAGATTTTGAAGCGGCTGCAGGAG
TATGCCATGAGTAGTCCTTTTGGAAAGGCGAGTGCGAGGACGTACGAGAC
GGTGAAGGATCGAACGGGGATGATCTGAATTGTAAATTTTGAGATTGTAA
GGGAGTTTGAGAAGTAAAGTAGGCGTGTGGGATAGAGTGGAGGAAGGCGA
GTGCTACGAAGGCAAGGGGTTGTGTATGTGAAGAAACAGAATTAAACGCA
GAGACAAAAGTGCGGAGGTGGGTTGA
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protein sequence of NO07G01410.1

>NO07G01410.1-protein ID=NO07G01410.1-protein|Name=NO07G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLVMQPRALLLTAKAARRSLASATPTAVTLIRALSSASHTNPPPSPDLTP
DQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLY
RSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIING
AMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKDRTGMI*
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mRNA from alignment at chr7:434521..435939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01410.1 ID=NO07G01410.1|Name=NO07G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at chr7:434521..435939- (Nannochloropsis oceanica)
GTGGTCACAAGCGCTTTCCTGTGGTCTTTATTGAGGTGAAATTCCGTTGC
GCTTCACCTCCTGGCTGCTGTCTGCGTCACCCTCCCTTCTTCCTTTTTAT
TTTATTTATTTATATATTCTCTATTAGGGTTCCGATTACACACATCATCA
CCACTCGGTCTCTTTCCACAAATTCTATGCATACAGGAAACACCTCTAGC
TACCCGGCTCGCAACTGCCCTGCTGCGTACGCATCGTCACGCAATGTTAG
TCATGCAGCCTCGTGCCCTTCTCCTCACTGCCAAGGCGGCGCGTCGTAGT
CTAGCGAGTGCCACACCCACTGCAGTGACCTTAATACGCGCCCTTTCTTC
GGCCTCGCACACGAATCCGCCGCCTTCACCCGACCTGACCCCGGACCAGG
TATTTGTTTCGAGATGGCAAGCATAGGCTGGTCTCCTATCTCCCTCGGAA
GCTTGAGCGCTCGTCAGAACGATCGGTACAATTACCTGTGCCAGGCGCGG
CACCACTTGTTCCGTGCAACTCTTCTTACAACTTTTCTTCGTCGCTTGAT
CTTTTCTGTTTCAGCAAGTTCACGGGCCGCATTCCCATGGAAACCACACA
GACGTCGCTAGACAGCCCCCTCACCCTCACCTGGCGGCATTCAATCACCC
ACGGCTCCCCCATTCCACCCAATCCTCCCTTCTTGACCTCCAAGCCACAA
CCCCATACATGCGAAAACATCCGATCGAACATCAAAGACCACCTGCGCCT
CAGAACTTGCATCCCCCCAGCCTTGACCCCACCTCCCTTCCTTTCTCCCT
CAAACTCATCCCACCCCCTTCCCTCCTCCTCCCCTTCCACAGATCCGTCG
CATCGGCGAACGTACTAAATCGCAACTCGAAGACCATCTTAAGCTCAAAA
CGGAAGTGCCCGCATATAGCCTTGACCCCTCCGCACCCGCAGGGCCTGTG
GACGCTAACCACATCCGCCGTAAGCGCCTCCTTTACCGCAGCAAACAAAG
GGGATGGCTCGAAGTTGACCTCTTGTTGGGGAGCTGGGCGGCGGAGAATG
TTTTTACACTGACGGTGGCCGAATGTGATGAGTATGAGAAGCTCTTGAAT
CAAGAAACGATCGATATCTTCAATATCATCAATGGTGCAATGCCCCCGCC
GGTGGAGCTGGAAGGGTCGAAGATTTTGAAGCGGCTGCAGGAGTATGCCA
TGAGTAGTCCTTTTGGAAAGGCGAGTGCGAGGACGTACGAGACGGTGAAG
GATCGAACGGGGATGATCTGAATTGTAAATTTTGAGATTGTAAGGGAGTT
TGAGAAGTAAAGTAGGCGTGTGGGATAGAGTGGAGGAAGGCGAGTGCTAC
GAAGGCAAGGGGTTGTGTATGTGAAGAAACAGAATTAAACGCAGAGACAA
AAGTGCGGAGGTGGGTTGA
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Coding sequence (CDS) from alignment at chr7:434521..435939-

>NO07G01410.1 ID=NO07G01410.1|Name=NO07G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr7:434521..435939- (Nannochloropsis oceanica)
ATGTTAGTCATGCAGCCTCGTGCCCTTCTCCTCACTGCCAAGGCGGCGCG
TCGTAGTCTAGCGAGTGCCACACCCACTGCAGTGACCTTAATACGCGCCC
TTTCTTCGGCCTCGCACACGAATCCGCCGCCTTCACCCGACCTGACCCCG
GACCAGATCCGTCGCATCGGCGAACGTACTAAATCGCAACTCGAAGACCA
TCTTAAGCTCAAAACGGAAGTGCCCGCATATAGCCTTGACCCCTCCGCAC
CCGCAGGGCCTGTGGACGCTAACCACATCCGCCGTAAGCGCCTCCTTTAC
CGCAGCAAACAAAGGGGATGGCTCGAAGTTGACCTCTTGTTGGGGAGCTG
GGCGGCGGAGAATGTTTTTACACTGACGGTGGCCGAATGTGATGAGTATG
AGAAGCTCTTGAATCAAGAAACGATCGATATCTTCAATATCATCAATGGT
GCAATGCCCCCGCCGGTGGAGCTGGAAGGGTCGAAGATTTTGAAGCGGCT
GCAGGAGTATGCCATGAGTAGTCCTTTTGGAAAGGCGAGTGCGAGGACGT
ACGAGACGGTGAAGGATCGAACGGGGATGATCTGA
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Synonyms
Publications