NO07G01380.1, NO07G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01380.1
Unique NameNO07G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1674
Alignment locationchr7:428808..430576 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:428808..430576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01380.1 vs.
Match: EWM27254.1 (Heat shock protein DnaJ [Nannochloropsis gaditana])

HSP 1 Score: 474.2 bits (1219), Expect = 5.700e-130
Identity = 286/592 (48.31%), Postives = 373/592 (63.01%), Query Frame = 0 
Query:    1 MLFYKSALLSRRVVAASSGGAQGVRKRALLSSSASRSEDERQRGRRDEQPP---LPETEDPFVILNVKVDATEAEIKTSFYQLAKQVHPDA-------AAQTHRTDALKAAADFHKLMRAYETLMDPTKRAEYILKRRHYSRNGTSASAAAAAAAAAVAGFSDQSSRDPNPVDAFNASLRKGRRRSARRRAGMYNAIHEGEHD--CEDENEEGRRRAGIAHAAARGAKPWDALTLSDPGLFGQLQESFHDALIYSYLGPRVAENTIPWAFEGEERRSRGRVTEERGAEIGKEGQESLHPHILEMTSGQQLLGFVDAAPLSIDSLLEA------------GREGKKEGEKEKQGVEEEEGLSLRSQLSGLISATDRKNYMPLRLVWQGRCLARSTRLRDPVEGEDVVVVQTYL----EGEVQHQHQHQQQEQRGK-------CYVIRGLESKRLLSSHQVRDAATGGLTHVLVSHRTPLVSHLHLLQAEGGVECRVTKGDLQSYIPSEYWRFPPRSQDHDVGSWYIERADPTAPGRNGGRSVAATRIEKLLPPAVIVLVCAFKTLDKEVIEEEKRQRSSKLKETVKGWVGKML 558
            M   +SA L RR +         VR R   SSSAS S     + R +   P   +P+T+DPF+IL V +DA+E+EIK +FYQLAK+VHPDA         +  R +A  AAADF KL+RAYE L DPT+RAEYILK  H  R   S    AA  +           + P+PVD FNASLR+GRRR A      +      + +   EDE  +G + AG      + A+ WDA++L +PGL G+LQESF +A+I++YLGP VA+NTIPWAFE EERR+RG    +     G+ G ++LHPHILEMTSGQQLLG+V++AP+S ++ LE             G +   +GE E +G    +GL LRSQLSG++S  D++N+  LR++WQG+CL R  R  D  + EDVV+++ +     E         Q  EQ G         YV+RGL ++RLLSSH VR AA+G ++HVLVSHRTPLVSH HLLQAEGGVECRV+KGDL++YIPSEYWRFPPRS DHDVGSWYIER    +P     R++ A    K+LPP V++LVCAFKTLDKE  E  K    S+L+ET++GWV +++
Sbjct:    1 MTAVQSAYLVRRFIVTGQW-LPSVRSRVFFSSSASSSSSWSDKERSNRSVPSLGVPDTDDPFLILGVSIDASESEIKNNFYQLAKRVHPDAVLRQSRDGVKNGRREASNAAADFQKLVRAYEILSDPTRRAEYILKNPHRPRGCGSGGVGAAPPS--------WGGKGPSPVDVFNASLRQGRRRRAGLGDDRFAKWTRSKENTGSEDEELKGTQGAG-PGGGGKAARSWDAVSLLNPGLLGRLQESFQEAMIHAYLGPYVADNTIPWAFEAEERRARGSRGRDE-TRRGRAGHQALHPHILEMTSGQQLLGYVESAPVSFEAFLEGMAVQEKRLVSRPGADMASKGEGEGEG--GADGLCLRSQLSGMVSLPDKENFASLRVMWQGQCLGRGMRFWDSDKKEDVVLIEAFALRDNEAPRPGWFGPQAPEQTGNEDMMGVGSYVVRGLGARRLLSSHPVRHAASGAVSHVLVSHRTPLVSHFHLLQAEGGVECRVSKGDLKAYIPSEYWRFPPRSPDHDVGSWYIERTGLASPETE--RTLRAKLRGKMLPPVVMMLVCAFKTLDKEEQEVGKGGGPSRLQETLRGWVQRIM 577
The following BLAST results are available for this feature:
BLAST of NO07G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27254.15.700e-13048.31Heat shock protein DnaJ [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01380NO07G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01380.1NO07G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01380.1.cds1NO07G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01380.1.cds2NO07G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01380.1 ID=NO07G01380.1|Name=NO07G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ATGCTCTTTTATAAGTCGGCCTTGTTGTCTCGGCGTGTCGTTGCAGCCAG
CAGTGGGGGCGCCCAAGGTGTACGGAAACGCGCTCTATTATCCTCGTCCG
CCTCCCGGTCGGAGGACGAAAGGCAGCGGGGTCGGCGCGATGAGCAACCA
CCCCTGCCCGAGACGGAAGACCCCTTCGTCATTCTAAACGTAAAGGTTGA
TGCCACGGAAGCGGAAATCAAGACCAGCTTTTATCAGTTGGCCAAGCAGG
TGCATCCGGACGCGGCTGCCCAAACCCACCGAACGGATGCTTTGAAAGCA
GCCGCGGACTTCCATAAGCTTATGCGTGCCTATGAGACCTTGATGGACCC
AACCAAGCGCGCAGAGTACATCCTTAAGCGTCGACATTACTCCCGCAATG
GGACCTCAGCATCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGTAGCAGGT
TTCTCCGACCAGAGCAGCCGAGATCCTAATCCTGTGGATGCCTTCAACGC
CTCTCTTCGCAAGGGCCGTCGTCGCAGCGCCCGGCGCCGGGCAGGGATGT
ACAATGCTATTCATGAGGGTGAACACGATTGCGAGGATGAGAACGAGGAA
GGAAGAAGAAGAGCAGGAATTGCCCATGCTGCCGCGAGAGGGGCCAAACC
ATGGGATGCCTTGACTCTGTCGGACCCGGGGTTGTTTGGTCAGCTGCAGG
AATCTTTTCACGATGCATTAATTTACTCTTACCTCGGGCCGAGGGTCGCG
GAGAACACAATCCCTTGGGCCTTTGAAGGCGAGGAGAGACGGTCGCGTGG
GAGAGTAACAGAGGAGAGAGGGGCGGAGATAGGGAAGGAGGGACAGGAAA
GTTTACATCCGCACATATTAGAGATGACTAGTGGGCAACAGTTGTTGGGT
TTTGTTGACGCTGCGCCGCTTTCTATAGACAGTTTGTTAGAGGCGGGAAG
AGAGGGGAAGAAGGAGGGAGAGAAAGAAAAGCAGGGAGTGGAGGAAGAGG
AAGGGCTGTCGTTGCGGTCGCAGCTAAGTGGCTTGATTTCAGCGACTGAT
AGAAAGAATTACATGCCCTTGAGGCTCGTGTGGCAAGGACGGTGCTTGGC
GCGAAGCACACGTCTGCGGGATCCGGTCGAAGGAGAGGATGTGGTGGTAG
TTCAGACGTACCTGGAAGGAGAGGTGCAGCACCAGCACCAGCACCAGCAA
CAAGAGCAACGAGGAAAGTGCTATGTCATTCGAGGCCTGGAATCGAAGCG
GCTACTTTCCAGTCATCAAGTCCGCGATGCCGCCACTGGAGGCTTGACCC
ACGTCCTCGTCTCGCACCGAACCCCTCTAGTCTCTCACTTGCACCTGCTC
CAAGCGGAGGGAGGGGTGGAATGTCGAGTTACCAAAGGCGACCTACAGTC
CTATATTCCTTCAGAATATTGGCGGTTTCCCCCTCGGAGTCAGGATCACG
ATGTGGGGAGTTGGTACATAGAGCGAGCCGACCCGACAGCGCCGGGGAGG
AATGGCGGGAGGAGCGTAGCGGCGACGAGGATAGAGAAACTGTTGCCGCC
GGCGGTGATTGTCTTGGTGTGTGCATTCAAGACGCTTGACAAGGAGGTGA
TAGAGGAGGAGAAGCGGCAGCGGTCGTCGAAGTTGAAGGAGACAGTGAAG
GGATGGGTGGGTAAGATGTTGTAA
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protein sequence of NO07G01380.1

>NO07G01380.1-protein ID=NO07G01380.1-protein|Name=NO07G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MLFYKSALLSRRVVAASSGGAQGVRKRALLSSSASRSEDERQRGRRDEQP
PLPETEDPFVILNVKVDATEAEIKTSFYQLAKQVHPDAAAQTHRTDALKA
AADFHKLMRAYETLMDPTKRAEYILKRRHYSRNGTSASAAAAAAAAAVAG
FSDQSSRDPNPVDAFNASLRKGRRRSARRRAGMYNAIHEGEHDCEDENEE
GRRRAGIAHAAARGAKPWDALTLSDPGLFGQLQESFHDALIYSYLGPRVA
ENTIPWAFEGEERRSRGRVTEERGAEIGKEGQESLHPHILEMTSGQQLLG
FVDAAPLSIDSLLEAGREGKKEGEKEKQGVEEEEGLSLRSQLSGLISATD
RKNYMPLRLVWQGRCLARSTRLRDPVEGEDVVVVQTYLEGEVQHQHQHQQ
QEQRGKCYVIRGLESKRLLSSHQVRDAATGGLTHVLVSHRTPLVSHLHLL
QAEGGVECRVTKGDLQSYIPSEYWRFPPRSQDHDVGSWYIERADPTAPGR
NGGRSVAATRIEKLLPPAVIVLVCAFKTLDKEVIEEEKRQRSSKLKETVK
GWVGKML*
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mRNA from alignment at chr7:428808..430576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01380.1 ID=NO07G01380.1|Name=NO07G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1769bp|location=Sequence derived from alignment at chr7:428808..430576- (Nannochloropsis oceanica)
ATGCTCTTTTATAAGTCGGCCTTGTTGTCTCGGCGTGTCGTTGCAGCCAG
CAGTGGGGGCGCCCAAGGTGTACGGAAACGCGCTCTATTATCCTCGTCCG
CCTCCCGGTCGGAGGACGAAAGGCAGCGGGGTCGGCGCGATGAGCAACCA
CCCCTGCCCGAGACGGAAGACCCCTTCGTCATTCTAAACGTAAAGGTTGA
TGCCACGGAAGCGGAAATCAAGACCAGCTTTTATCAGTTGGCCAAGCAGG
TGCATCCGGACGCGGCTGCCCAAACCCACCGAACGGATGCTTTGAAAGCA
GCCGCGGACTTCCATAAGCTTGTAAGTGACAGACGGTAGGCATGCCTGGC
TTTGCATATTTGTGTTTTCGTGGTGAATAATTTTGTCGGGCGTCTGTTTT
CTTCCCATACTCATAGATGCGTGCCTATGAGACCTTGATGGACCCAACCA
AGCGCGCAGAGTACATCCTTAAGCGTCGACATTACTCCCGCAATGGGACC
TCAGCATCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGTAGCAGGTTTCTC
CGACCAGAGCAGCCGAGATCCTAATCCTGTGGATGCCTTCAACGCCTCTC
TTCGCAAGGGCCGTCGTCGCAGCGCCCGGCGCCGGGCAGGGATGTACAAT
GCTATTCATGAGGGTGAACACGATTGCGAGGATGAGAACGAGGAAGGAAG
AAGAAGAGCAGGAATTGCCCATGCTGCCGCGAGAGGGGCCAAACCATGGG
ATGCCTTGACTCTGTCGGACCCGGGGTTGTTTGGTCAGCTGCAGGAATCT
TTTCACGATGCATTAATTTACTCTTACCTCGGGCCGAGGGTCGCGGAGAA
CACAATCCCTTGGGCCTTTGAAGGCGAGGAGAGACGGTCGCGTGGGAGAG
TAACAGAGGAGAGAGGGGCGGAGATAGGGAAGGAGGGACAGGAAAGTTTA
CATCCGCACATATTAGAGATGACTAGTGGGCAACAGTTGTTGGGTTTTGT
TGACGCTGCGCCGCTTTCTATAGACAGTTTGTTAGAGGCGGGAAGAGAGG
GGAAGAAGGAGGGAGAGAAAGAAAAGCAGGGAGTGGAGGAAGAGGAAGGG
CTGTCGTTGCGGTCGCAGCTAAGTGGCTTGATTTCAGCGACTGATAGAAA
GAATTACATGCCCTTGAGGCTCGTGTGGCAAGGACGGTGCTTGGCGCGAA
GCACACGTCTGCGGGATCCGGTCGAAGGAGAGGATGTGGTGGTAGTTCAG
ACGTACCTGGAAGGAGAGGTGCAGCACCAGCACCAGCACCAGCAACAAGA
GCAACGAGGAAAGTGCTATGTCATTCGAGGCCTGGAATCGAAGCGGCTAC
TTTCCAGTCATCAAGTCCGCGATGCCGCCACTGGAGGCTTGACCCACGTC
CTCGTCTCGCACCGAACCCCTCTAGTCTCTCACTTGCACCTGCTCCAAGC
GGAGGGAGGGGTGGAATGTCGAGTTACCAAAGGCGACCTACAGTCCTATA
TTCCTTCAGAATATTGGCGGTTTCCCCCTCGGAGTCAGGATCACGATGTG
GGGAGTTGGTACATAGAGCGAGCCGACCCGACAGCGCCGGGGAGGAATGG
CGGGAGGAGCGTAGCGGCGACGAGGATAGAGAAACTGTTGCCGCCGGCGG
TGATTGTCTTGGTGTGTGCATTCAAGACGCTTGACAAGGAGGTGATAGAG
GAGGAGAAGCGGCAGCGGTCGTCGAAGTTGAAGGAGACAGTGAAGGGATG
GGTGGGTAAGATGTTGTAA
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Coding sequence (CDS) from alignment at chr7:428808..430576-

>NO07G01380.1 ID=NO07G01380.1|Name=NO07G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr7:428808..430576- (Nannochloropsis oceanica)
ATGCTCTTTTATAAGTCGGCCTTGTTGTCTCGGCGTGTCGTTGCAGCCAG
CAGTGGGGGCGCCCAAGGTGTACGGAAACGCGCTCTATTATCCTCGTCCG
CCTCCCGGTCGGAGGACGAAAGGCAGCGGGGTCGGCGCGATGAGCAACCA
CCCCTGCCCGAGACGGAAGACCCCTTCGTCATTCTAAACGTAAAGGTTGA
TGCCACGGAAGCGGAAATCAAGACCAGCTTTTATCAGTTGGCCAAGCAGG
TGCATCCGGACGCGGCTGCCCAAACCCACCGAACGGATGCTTTGAAAGCA
GCCGCGGACTTCCATAAGCTTATGCGTGCCTATGAGACCTTGATGGACCC
AACCAAGCGCGCAGAGTACATCCTTAAGCGTCGACATTACTCCCGCAATG
GGACCTCAGCATCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGTAGCAGGT
TTCTCCGACCAGAGCAGCCGAGATCCTAATCCTGTGGATGCCTTCAACGC
CTCTCTTCGCAAGGGCCGTCGTCGCAGCGCCCGGCGCCGGGCAGGGATGT
ACAATGCTATTCATGAGGGTGAACACGATTGCGAGGATGAGAACGAGGAA
GGAAGAAGAAGAGCAGGAATTGCCCATGCTGCCGCGAGAGGGGCCAAACC
ATGGGATGCCTTGACTCTGTCGGACCCGGGGTTGTTTGGTCAGCTGCAGG
AATCTTTTCACGATGCATTAATTTACTCTTACCTCGGGCCGAGGGTCGCG
GAGAACACAATCCCTTGGGCCTTTGAAGGCGAGGAGAGACGGTCGCGTGG
GAGAGTAACAGAGGAGAGAGGGGCGGAGATAGGGAAGGAGGGACAGGAAA
GTTTACATCCGCACATATTAGAGATGACTAGTGGGCAACAGTTGTTGGGT
TTTGTTGACGCTGCGCCGCTTTCTATAGACAGTTTGTTAGAGGCGGGAAG
AGAGGGGAAGAAGGAGGGAGAGAAAGAAAAGCAGGGAGTGGAGGAAGAGG
AAGGGCTGTCGTTGCGGTCGCAGCTAAGTGGCTTGATTTCAGCGACTGAT
AGAAAGAATTACATGCCCTTGAGGCTCGTGTGGCAAGGACGGTGCTTGGC
GCGAAGCACACGTCTGCGGGATCCGGTCGAAGGAGAGGATGTGGTGGTAG
TTCAGACGTACCTGGAAGGAGAGGTGCAGCACCAGCACCAGCACCAGCAA
CAAGAGCAACGAGGAAAGTGCTATGTCATTCGAGGCCTGGAATCGAAGCG
GCTACTTTCCAGTCATCAAGTCCGCGATGCCGCCACTGGAGGCTTGACCC
ACGTCCTCGTCTCGCACCGAACCCCTCTAGTCTCTCACTTGCACCTGCTC
CAAGCGGAGGGAGGGGTGGAATGTCGAGTTACCAAAGGCGACCTACAGTC
CTATATTCCTTCAGAATATTGGCGGTTTCCCCCTCGGAGTCAGGATCACG
ATGTGGGGAGTTGGTACATAGAGCGAGCCGACCCGACAGCGCCGGGGAGG
AATGGCGGGAGGAGCGTAGCGGCGACGAGGATAGAGAAACTGTTGCCGCC
GGCGGTGATTGTCTTGGTGTGTGCATTCAAGACGCTTGACAAGGAGGTGA
TAGAGGAGGAGAAGCGGCAGCGGTCGTCGAAGTTGAAGGAGACAGTGAAG
GGATGGGTGGGTAAGATGTTGTAA
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Synonyms
Publications