NO07G01370.1, NO07G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01370.1
Unique NameNO07G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3574
Alignment locationchr7:428704..432430 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:428704..432430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01370.1 vs.
Match: EWM27269.1 (UPF0103/Mediator of ErbB2-driven cell motility [Nannochloropsis gaditana])

HSP 1 Score: 465.7 bits (1197), Expect = 1.200e-127
Identity = 228/321 (71.03%), Postives = 269/321 (83.80%), Query Frame = 0
Query:   24 MTKDTYVRQASHSGSWYTKSSETLDSQLTCWLSEASTASLLTPRKGSVRALIAPHAGYSFSGPTAAYAYMHLDPTLIRRIFILGPSHHVHLKACALSGASVCATPVGDLTVDEAVRAELLASPLFQRMTQGIDEDEHSIEMHLPYVAHRIRATQGITIVPVMVGALDPAQEAEYGRIFASYLSDPSNFFIISTDFCHWGRRFAYQPYDSSYGTTIADYIEWLDKQGMGLIEEGDPKAFTTYLRKHQNTICGRHPISVFLQAAKAYREREGGSE--EIRVGFVRYAQSSKCVSRQDSSVSYASAVATTVSANG---GNGGKK 340
            M KD Y+R+ASHSGSWYTKS E L  QL+ WL EAS+AS  TP +  V+ALIAPHAGYS+SGPTAA+AYMHLDP++I+R+FILGPSHHV+L+ACA+SGASVC TPVG L+VDEAVRAELLA PLFQ M Q +DEDEHSIEMHLPYVAH +   QG++IVP++VG+LDP QEA YGRI A YLSDP+N FI+STDFCHWGRRF YQP+D +YG  I +YIEWLD+QGM LIE+GDP+AFTTYLR+++NTICGRHP+ VFLQAA+A   REGG E  ++RV FVRYAQSS+C+   DSSVSYASAVATT+ A     GNGG K
Sbjct:    1 MGKDGYIRKASHSGSWYTKSGEVLRKQLSEWLLEASSASSSTPSQRCVKALIAPHAGYSYSGPTAAHAYMHLDPSVIQRVFILGPSHHVYLRACAVSGASVCETPVGPLSVDEAVRAELLADPLFQTMAQRVDEDEHSIEMHLPYVAHLVGEVQGVSIVPILVGSLDPTQEAVYGRILAKYLSDPANLFIVSTDFCHWGRRFQYQPFDRAYGEDIHEYIEWLDRQGMALIEQGDPQAFTTYLRQYRNTICGRHPLGVFLQAAQAL--REGGKEGLDVRVEFVRYAQSSRCMHETDSSVSYASAVATTLMAGNDARGNGGAK 319          
The following BLAST results are available for this feature:
BLAST of NO07G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27269.11.200e-12771.03UPF0103/Mediator of ErbB2-driven cell motility [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01370NO07G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01370.1NO07G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01370.1.cds1NO07G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01370.1.cds2NO07G01370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01370.1 ID=NO07G01370.1|Name=NO07G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3574bp
ACTGGCATTCTCCAAGTCTATTCGTCGTATCTTTGGTTCTGTCGCCCACG
CTTCTCAATAGTGAAGAAATGTTCCTGTTTCTTCACACCGACTCTTCACC
TCCCTTACAACATCTTACCCACCCATCCCTTCACTGTCTCCTTCAACTTC
GACGACCGCTGCCGCTTCTCCTCCTCTATCACCTCCTTGTCAAGCGTCTT
GAATGCACACACCAAGACAATCACCGCCGGCGGCAACAGTTTCTCTATCC
TCGTCGCCGCTACGCTCCTCCCGCCATTCCTCCCCGGCGCTGTCGGGTCG
GCTCGCTCTATGTACCAACTCCCCACATCGTGATCCTGACTCCGAGGGGG
AAACCGCCAATATTCTGAAGGAATATAGGACTGTAGGTCGCCTTTGGTAA
CTCGACATTCCACCCCTCCCTCCGCTTGGAGCAGGTGCAAGTGAGAGACT
AGAGGGGTTCGGTGCGAGACGAGGACGTGGGTCAAGCCTCCAGTGGCGGC
ATCGCGGACTTGATGACTGGAAAGTAGCCGCTTCGATTCCAGGCCTCGAA
TGACATAGCACTTTCCTCGTTGCTCTTGTTGCTGGTGCTGGTGCTGGTGC
TGCACCTCTCCTTCCAGGTACGTCTGAACTACCACCACATCCTCTCCTTC
GACCGGATCCCGCAGACGTGTGCTTCGCGCCAAGCACCGTCCTTGCCACA
CGAGCCTCAAGGGCATGTAATTCTTTCTATCAGTCGCTGAAATCAAGCCA
CTTAGCTGCGACCGCAACGACAGCCCTTCCTCTTCCTCCACTCCCTGCTT
TTCTTTCTCTCCCTCCTTCTTCCCCTCTCTTCCCGCCTCTAACAAACTGT
CTATAGAAAGCGGCGCAGCGTCAACAAAACCCAACAACTGTTGCCCACTA
GTCATCTCTAATATGTGCGGATGTAAACTTTCCTGTCCCTCCTTCCCTAT
CTCCGCCCCTCTCTCCTCTGTTACTCTCCCACGCGACCGTCTCTCCTCGC
CTTCAAAGGCCCAAGGGATTGTGTTCTCCGCGACCCTCGGCCCGAGGTAA
GAGTAAATTAATGCATCGTGAAAAGATTCCTGCAGCTGACCAAACAACCC
CGGGTCCGACAGAGTCAAGGCATCCCATGGTTTGGCCCCTCTCGCGGCAG
CATGGGCAATTCCTGCTCTTCTTCTTCCTTCCTCGTTCTCATCCTCGCAA
TCGTGTTCACCCTCATGAATAGCATTGTACATCCCTGCCCGGCGCCGGGC
GCTGCGACGACGGCCCTTGCGAAGAGAGGCGTTGAAGGCATCCACAGGAT
TAGGATCTCGGCTGCTCTGGTCGGAGAAACCTGCTACTGCCGCCGCTGCT
GCTGCTGCTGCTGCTGATGCTGAGGTCCCATTGCGGGAGTAATGTCGACG
CTTAAGGATGTACTCTGCGCGCTTGGTTGGGTCCATCAAGGTCTCATAGG
CACGCATCTATGAGTATGGGAAGAAAACAGACGCCCGACAAAATTATTCA
CCACGAAAACACAAATATGCAAAGCCAGGCATGCCTACCGTCTGTCACTT
ACAAGCTTATGGAAGTCCGCGGCTGCTTTCAAAGCATCCGTTCGGTGGGT
TTGGGCAGCCGCGTCCGGATGCACCTGCTTGGCCAACTGATAAAAGCTGG
TCTTGATTTCCGCTTCCGTGGCATCAACCTTTACGTTTAGAATGACGAAG
GGGTCTTCCGTCTCGGGCAGGGGTGGTTGCTCATCGCGCCGACCCCGCTG
CCTTTCGTCCTCCGACCGGGAGGCGGACGAGGATAATAGAGCGCGTTTCC
GTACACCTTGGGCGCCCCCACTGCTGGCTGCAACGACACGCCGAGACAAC
AAGGCCGACTTATAAAAGAGCATCGGATGCGTGTATTAAGGTGATAGGGA
GTGGCAAGAGTGGACACGCCGGGCACACGCCAGATGGACGATAGGCCAGG
TCCGAGGATGCTGTTGATCGGAAATCACAATAGTGGTCGTCTCTGCCTCT
TTAAAGTCTACAAGCGCTGGTCTGTCACAGCACTACCGCCCTCCCCTCGC
TCGCGGGCCTAGCCTATTATGTGAGTGCTTTGGGGATGGGTTCGGCTGCT
GGGGTGGCAAAAGTGCACGTGCGGCGTTAATTGGCGATGGTTGGGGGGAG
GAGGTCGCAATGGCAAGTCCTTGTCAACAAGCAGCACAGCCCACCTCCCC
GCACACAGGCACAAGCACAGTGAGGGAGATGACGAAGGACACCTATGTCC
GCCAAGCCAGCCACAGCGGCAGTTGGTACACCAAGTCAAGCGAGACCTTG
GACTCGCAGCTGACGTGCTGGCTAAGTGAAGCAAGTACTGCCTCGTTGTT
AACGCCAAGGAAAGGGAGCGTCCGGGCGCTCATTGCCCCACACGCAGGCT
ACAGTTTCTCGGGCCCGACGGCGGCGTACGCGTACATGCACTTGGACCCT
ACTTTGATCCGCCGCATCTTTATCTTAGGGCCCTCCCACCACGTCCACCT
CAAAGCTTGTGCTCTCTCGGGCGCCTCTGTGTGCGCTACCCCTGTAGGCG
ACCTTACAGTGGACGAGGCTGTTCGAGCCGAGTTGCTGGCGAGTCCTCTG
TTTCAACGCATGACCCAGGGAATAGATGAGGACGAGCATTCGATCGAGAT
GCATTTGCCGTACGTGGCCCATAGGATCAGAGCAACGCAGGGTATTACCA
TTGTGCCGGTAATGGTGGGTGCATTGGACCCTGCGCAGGAGGCGGAGTAC
GGACGCATCTTCGCGTCCTACCTCTCCGATCCCTCCAACTTCTTCATCAT
CAGCACCGACTTCTGCCACTGGGGCCGTCGCTTCGCCTACCAACCGTACG
ACTCATCCTACGGCACCACCATCGCTGACTACATCGAGTGGCTGGATAAG
CAGGGCATGGGCTTGATAGAGGAGGGCGACCCAAAGGCCTTTACCACGTA
CCTCCGCAAGCACCAAAATACCATCTGTGGTCGTCATCCAATCAGTGTTT
TCTTGCAGGCGGCCAAAGCATACAGGGAGAGAGAGGGAGGGAGCGAGGAG
ATACGGGTCGGCTTCGTGAGGTATGCGCAGAGTAGTAAATGTGTGAGTCG
GCAGGATTCGTCTGTGAGCTACGCGAGTGCTGTGGCCACGACAGTATCGG
CGAATGGGGGAAATGGAGGGAAGAAGGGGTAGAGGGAGGGAGAGAGGGAG
GAAAGGAGGGAGGGAGAGGAGAGGGATACTTAGAGGATACCGAAGAAGGG
AGAAGACAGGGGACCGAGAGGACGGAGGGAAGGAGGGAGGTAAGGAGAAG
GGGAGTCGGGGAAGGAAGGATAAAGAAGAGGGGGTTGTGTAGTGAGAATG
TACGCAGGAGCCGGAAGGGACGGAAGGATGGAGGGGAAACGAAGGGAGAT
GAGAGGAGAGAGTTTAGGAAGTGGTGCATGTGAATGAGAGCGAGCAGGAG
CAGTGTGTACAGAGAGAAATGGAAGACAGATACTTGAAGACGACCTTGGC
CCCTCATGCTCCCCTGTCTCCCCCCCCTTTCCTTCCCCATCCTCTTTCGC
TTTGTGAATGATTGTGTGTGTGTG
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protein sequence of NO07G01370.1

>NO07G01370.1-protein ID=NO07G01370.1-protein|Name=NO07G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MASPCQQAAQPTSPHTGTSTVREMTKDTYVRQASHSGSWYTKSSETLDSQ
LTCWLSEASTASLLTPRKGSVRALIAPHAGYSFSGPTAAYAYMHLDPTLI
RRIFILGPSHHVHLKACALSGASVCATPVGDLTVDEAVRAELLASPLFQR
MTQGIDEDEHSIEMHLPYVAHRIRATQGITIVPVMVGALDPAQEAEYGRI
FASYLSDPSNFFIISTDFCHWGRRFAYQPYDSSYGTTIADYIEWLDKQGM
GLIEEGDPKAFTTYLRKHQNTICGRHPISVFLQAAKAYREREGGSEEIRV
GFVRYAQSSKCVSRQDSSVSYASAVATTVSANGGNGGKKG*
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mRNA from alignment at chr7:428704..432430+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01370.1 ID=NO07G01370.1|Name=NO07G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3727bp|location=Sequence derived from alignment at chr7:428704..432430+ (Nannochloropsis oceanica)
ACTGGCATTCTCCAAGTCTATTCGTCGTATCTTTGGTTCTGTCGCCCACG CTTCTCAATAGTGAAGAAATGTTCCTGTTTCTTCACACCGACTCTTCACC TCCCTTACAACATCTTACCCACCCATCCCTTCACTGTCTCCTTCAACTTC GACGACCGCTGCCGCTTCTCCTCCTCTATCACCTCCTTGTCAAGCGTCTT GAATGCACACACCAAGACAATCACCGCCGGCGGCAACAGTTTCTCTATCC TCGTCGCCGCTACGCTCCTCCCGCCATTCCTCCCCGGCGCTGTCGGGTCG GCTCGCTCTATGTACCAACTCCCCACATCGTGATCCTGACTCCGAGGGGG AAACCGCCAATATTCTGAAGGAATATAGGACTGTAGGTCGCCTTTGGTAA CTCGACATTCCACCCCTCCCTCCGCTTGGAGCAGGTGCAAGTGAGAGACT AGAGGGGTTCGGTGCGAGACGAGGACGTGGGTCAAGCCTCCAGTGGCGGC ATCGCGGACTTGATGACTGGAAAGTAGCCGCTTCGATTCCAGGCCTCGAA TGACATAGCACTTTCCTCGTTGCTCTTGTTGCTGGTGCTGGTGCTGGTGC TGCACCTCTCCTTCCAGGTACGTCTGAACTACCACCACATCCTCTCCTTC GACCGGATCCCGCAGACGTGTGCTTCGCGCCAAGCACCGTCCTTGCCACA CGAGCCTCAAGGGCATGTAATTCTTTCTATCAGTCGCTGAAATCAAGCCA CTTAGCTGCGACCGCAACGACAGCCCTTCCTCTTCCTCCACTCCCTGCTT TTCTTTCTCTCCCTCCTTCTTCCCCTCTCTTCCCGCCTCTAACAAACTGT CTATAGAAAGCGGCGCAGCGTCAACAAAACCCAACAACTGTTGCCCACTA GTCATCTCTAATATGTGCGGATGTAAACTTTCCTGTCCCTCCTTCCCTAT CTCCGCCCCTCTCTCCTCTGTTACTCTCCCACGCGACCGTCTCTCCTCGC CTTCAAAGGCCCAAGGGATTGTGTTCTCCGCGACCCTCGGCCCGAGGTAA GAGTAAATTAATGCATCGTGAAAAGATTCCTGCAGCTGACCAAACAACCC CGGGTCCGACAGAGTCAAGGCATCCCATGGTTTGGCCCCTCTCGCGGCAG CATGGGCAATTCCTGCTCTTCTTCTTCCTTCCTCGTTCTCATCCTCGCAA TCGTGTTCACCCTCATGAATAGCATTGTACATCCCTGCCCGGCGCCGGGC GCTGCGACGACGGCCCTTGCGAAGAGAGGCGTTGAAGGCATCCACAGGAT TAGGATCTCGGCTGCTCTGGTCGGAGAAACCTGCTACTGCCGCCGCTGCT GCTGCTGCTGCTGCTGATGCTGAGGTCCCATTGCGGGAGTAATGTCGACG CTTAAGGATGTACTCTGCGCGCTTGGTTGGGTCCATCAAGGTCTCATAGG CACGCATCTATGAGTATGGGAAGAAAACAGACGCCCGACAAAATTATTCA CCACGAAAACACAAATATGCAAAGCCAGGCATGCCTACCGTCTGTCACTT ACAAGCTTATGGAAGTCCGCGGCTGCTTTCAAAGCATCCGTTCGGTGGGT TTGGGCAGCCGCGTCCGGATGCACCTGCTTGGCCAACTGATAAAAGCTGG TCTTGATTTCCGCTTCCGTGGCATCAACCTTTACGTTTAGAATGACGAAG GGGTCTTCCGTCTCGGGCAGGGGTGGTTGCTCATCGCGCCGACCCCGCTG CCTTTCGTCCTCCGACCGGGAGGCGGACGAGGATAATAGAGCGCGTTTCC GTACACCTTGGGCGCCCCCACTGCTGGCTGCAACGACACGCCGAGACAAC AAGGCCGACTTATAAAAGAGCATCGGATGCGTGTATTAAGGTGATAGGGA GTGGCAAGAGTGGACACGCCGGGCACACGCCAGATGGACGATAGGCCAGG TCCGAGGATGCTGTTGATCGGAAATCACAATAGTGGTCGTCTCTGCCTCT TTAAAGTCTACAAGCGCTGGTCTGTCACAGCACTACCGCCCTCCCCTCGC TCGCGGGCCTAGCCTATTATGTGAGTGCTTTGGGGATGGGTTCGGCTGCT GGGGTGGCAAAAGTGCACGTGCGGCGTTAATTGGCGATGGTTGGGGGGAG GAGGTCGCAATGGCAAGTCCTTGTCAACAAGCAGCACAGCCCACCTCCCC GCACACAGGCACAAGCACAGTGAGGGAGATGACGAAGGACACCTATGTCC GCCAAGCCAGCCACAGCGGCAGTTGGTACACCAAGTCAAGCGAGACCTTG GACTCGCAGCTGACGTGCTGGCTAAGTGAAGCAAGTACTGCCTCGTTGTT AACGCCAAGGAAAGGGAGCGTCCGGGCGCTCATTGCCCCACACGCAGGCT ACAGTTTCTCGGGCCCGACGGCGGCGTACGCGTACATGCACTTGGACCCT ACTTTGATCCGCCGCATCTTTATCTTAGGGCCCTCCCACCACGTCCACCT CAAAGCTTGTGCTCTCTCGGGCGCCTCTGTGTGCGCTACCCCTGTAGGCG ACCTTACAGTGGACGAGGCTGTTCGAGCCGAGTTGCTGGCGAGTCCTCTG TTTCAACGCATGACCCAGGGAATAGATGAGGACGAGCATTCGATCGAGAT GCATTTGCCGTACGTGGCCCATAGGATCAGAGCAACGCAGGGTATTACCA TTGTGCCGGTAATGGTGGGTGCATTGGACCCTGCGCAGGAGGCGGAGTAC GGACGGTACGTGTGTTACTATGCCCGAAAATCTAGAGGATATCTGTTGCG ATAGAAAGGGCGTCATTCACCCTCCTTCCCTTACTCCCCTCCCTCTCCCG TCACTCATCCACTCACCTACCCTCCCTCACTCCCGTTCTCCTCTCCTCCC ACCCATAGCATCTTCGCGTCCTACCTCTCCGATCCCTCCAACTTCTTCAT CATCAGCACCGACTTCTGCCACTGGGGCCGTCGCTTCGCCTACCAACCGT ACGACTCATCCTACGGCACCACCATCGCTGACTACATCGAGTGGCTGGAT AAGCAGGGCATGGGCTTGATAGAGGAGGGCGACCCAAAGGCCTTTACCAC GTACCTCCGCAAGCACCAAAATACCATCTGTGGTCGTCATCCAATCAGTG TTTTCTTGCAGGCGGCCAAAGCATACAGGGAGAGAGAGGGAGGGAGCGAG GAGATACGGGTCGGCTTCGTGAGGTATGCGCAGAGTAGTAAATGTGTGAG TCGGCAGGATTCGTCTGTGAGCTACGCGAGTGCTGTGGCCACGACAGTAT CGGCGAATGGGGGAAATGGAGGGAAGAAGGGGTAGAGGGAGGGAGAGAGG GAGGAAAGGAGGGAGGGAGAGGAGAGGGATACTTAGAGGATACCGAAGAA GGGAGAAGACAGGGGACCGAGAGGACGGAGGGAAGGAGGGAGGTAAGGAG AAGGGGAGTCGGGGAAGGAAGGATAAAGAAGAGGGGGTTGTGTAGTGAGA ATGTACGCAGGAGCCGGAAGGGACGGAAGGATGGAGGGGAAACGAAGGGA GATGAGAGGAGAGAGTTTAGGAAGTGGTGCATGTGAATGAGAGCGAGCAG GAGCAGTGTGTACAGAGAGAAATGGAAGACAGATACTTGAAGACGACCTT GGCCCCTCATGCTCCCCTGTCTCCCCCCCCTTTCCTTCCCCATCCTCTTT CGCTTTGTGAATGATTGTGTGTGTGTG
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Coding sequence (CDS) from alignment at chr7:428704..432430+

>NO07G01370.1 ID=NO07G01370.1|Name=NO07G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr7:428704..432430+ (Nannochloropsis oceanica)
ATGGCAAGTCCTTGTCAACAAGCAGCACAGCCCACCTCCCCGCACACAGG
CACAAGCACAGTGAGGGAGATGACGAAGGACACCTATGTCCGCCAAGCCA
GCCACAGCGGCAGTTGGTACACCAAGTCAAGCGAGACCTTGGACTCGCAG
CTGACGTGCTGGCTAAGTGAAGCAAGTACTGCCTCGTTGTTAACGCCAAG
GAAAGGGAGCGTCCGGGCGCTCATTGCCCCACACGCAGGCTACAGTTTCT
CGGGCCCGACGGCGGCGTACGCGTACATGCACTTGGACCCTACTTTGATC
CGCCGCATCTTTATCTTAGGGCCCTCCCACCACGTCCACCTCAAAGCTTG
TGCTCTCTCGGGCGCCTCTGTGTGCGCTACCCCTGTAGGCGACCTTACAG
TGGACGAGGCTGTTCGAGCCGAGTTGCTGGCGAGTCCTCTGTTTCAACGC
ATGACCCAGGGAATAGATGAGGACGAGCATTCGATCGAGATGCATTTGCC
GTACGTGGCCCATAGGATCAGAGCAACGCAGGGTATTACCATTGTGCCGG
TAATGGTGGGTGCATTGGACCCTGCGCAGGAGGCGGAGTACGGACGCATC
TTCGCGTCCTACCTCTCCGATCCCTCCAACTTCTTCATCATCAGCACCGA
CTTCTGCCACTGGGGCCGTCGCTTCGCCTACCAACCGTACGACTCATCCT
ACGGCACCACCATCGCTGACTACATCGAGTGGCTGGATAAGCAGGGCATG
GGCTTGATAGAGGAGGGCGACCCAAAGGCCTTTACCACGTACCTCCGCAA
GCACCAAAATACCATCTGTGGTCGTCATCCAATCAGTGTTTTCTTGCAGG
CGGCCAAAGCATACAGGGAGAGAGAGGGAGGGAGCGAGGAGATACGGGTC
GGCTTCGTGAGGTATGCGCAGAGTAGTAAATGTGTGAGTCGGCAGGATTC
GTCTGTGAGCTACGCGAGTGCTGTGGCCACGACAGTATCGGCGAATGGGG
GAAATGGAGGGAAGAAGGGGTAG
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Synonyms
Publications