NO07G01360.1, NO07G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01360.1
Unique NameNO07G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1400
Alignment locationchr7:427304..428703 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:427304..428703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01360.1 vs.
Match: EWM27262.1 (hypothetical protein Naga_100038g25 [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 1.200e-35
Identity = 153/379 (40.37%), Postives = 203/379 (53.56%), Query Frame = 0
Query:    4 QDGSIPATESAFTQALHQPAVVKDQFDLLYASLCQEGNNDDDGSSCSSSP---SVCPPRQRHRRRAASVSIN-----AEESEDEEDKHQRASATAPVKATATKKRQRASDTDVDKPQR-RAPLSPLRPRYDEEELRHSWKPLAPAGDDYMDLSATIS-SAGRRKAAAAAAPARGKGTKATAGAKGRCSGEGELGNFTHSVGPLRGEWLQTRKAVVSERTSVVPKRASTNITAISTGRAISPRTADATPSTTAKASSSRSSIGMHSAARSSGSTGSSNTNTSQHSRATSTFFSPRPRFLGLSPESGGNSGGLGGSGGSVGCKKRPVTGTARATTMGVGSASKSSLTGGTVSSSGGNGMNKGLPSAALFDVLKKSIFSPKA 373
            QD   PA E+AFTQAL QP VVKDQFDLLYAS+   G  DD G+  +      ++    Q H+ + +S  +       +  ++EE+  +  +  APV    +KKR+RAS  D +K +  RA +SP  P YDEE+LR  WKPLAPA DD++D+S +IS   G       A     K  +A    KG    E ++     S G   GEWLQ+R A+VSER S+VPK  +T+          S  TA  TP+   KA   R +  + +      S+GS ++  S  SR+  +FFSPRPRFLGLSPE  G + G  G GGSV  KK    G   +      + SK  L G T ++S      K +P +ALF VLKKSIFS KA
Sbjct:    2 QDLDSPAAENAFTQALQQPNVVKDQFDLLYASIF--GRKDDSGNQITEDDIDGAIVLSSQNHQGKVSSKYLEDNRWMIDRHDEEEEVTRLKTPVAPV----SKKRRRASFVDFEKVEACRALISPRPPNYDEEKLRSVWKPLAPAEDDFLDVSLSISRQRGPNTGYKVAEEKAMKSKQAVRCRKGEGGEESDV-----SCG---GEWLQSRTALVSERNSIVPKHVNTST---------SSDTAHVTPTMPCKA---RGAAPLTAGGTRRLSSGSGSSTGSHQSRSMGSFFSPRPRFLGLSPE--GAAYGTEGRGGSVMEKKS--LGREDSGGKSASAVSKRCLPGCTPAAS--YTQEKPMPPSALFSVLKKSIFSHKA 348          
The following BLAST results are available for this feature:
BLAST of NO07G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27262.11.200e-3540.37hypothetical protein Naga_100038g25 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01360NO07G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01360.1NO07G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01360.1.cds1NO07G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01360.1 ID=NO07G01360.1|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
GTGCGGAACTGGAATATAACGGCTTTTCGACGTGTGCGCAGCATCTCCCG
CCCCCTACCGTCTATCCCACCCTACGTACCAAATGTGCCCCCACGCCTCC
GACTATTCTCTCGCAGCCACAGGCATCATAGCATTGTCACCATGGTGACA
CAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACAGGCCCTGCA
TCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATGCCTCGTTAT
GCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCGTCGTCGCCC
TCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGCTAGCGTCTC
CATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACCAAAGAGCAT
CAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGGCAGAGGGCC
AGCGATACCGACGTCGATAAACCTCAACGCCGCGCTCCTCTATCGCCTCT
GCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGAAGCCTCTAG
CCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATCTCTAGTGCG
GGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGGAAAAGGGAC
CAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAGGGGAGTTGG
GCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGGCTGCAGACC
CGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAAGCGTGCCAG
CACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCCCGCGGACTG
CCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCCCGAAGCAGC
ATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGGCTCCAGCAA
TACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTTTTTCGCCAC
GACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAATAGTGGTGGA
CTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCCAGTAACGGG
GACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTAAAAGCAGCC
TCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATGAACAAGGGG
TTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTATATTTTCACC
GAAAGCTCATTGAAATTGATCTCTAGGGTATGTGAAACATTAGGAAAAAG
GAAGGACAGAGGGAGGAAAGTACGTGCCTCGGGTTGCGTGCATGGCATGT
AAAAAATAAGGACAAAGAAAGGAATTATGGAACGATTTCAAAAATAGTCA
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protein sequence of NO07G01360.1

>NO07G01360.1-protein ID=NO07G01360.1-protein|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MVTQDGSIPATESAFTQALHQPAVVKDQFDLLYASLCQEGNNDDDGSSCS
SSPSVCPPRQRHRRRAASVSINAEESEDEEDKHQRASATAPVKATATKKR
QRASDTDVDKPQRRAPLSPLRPRYDEEELRHSWKPLAPAGDDYMDLSATI
SSAGRRKAAAAAAPARGKGTKATAGAKGRCSGEGELGNFTHSVGPLRGEW
LQTRKAVVSERTSVVPKRASTNITAISTGRAISPRTADATPSTTAKASSS
RSSIGMHSAARSSGSTGSSNTNTSQHSRATSTFFSPRPRFLGLSPESGGN
SGGLGGSGGSVGCKKRPVTGTARATTMGVGSASKSSLTGGTVSSSGGNGM
NKGLPSAALFDVLKKSIFSPKAH*
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mRNA from alignment at chr7:427304..428703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01360.1 ID=NO07G01360.1|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp|location=Sequence derived from alignment at chr7:427304..428703+ (Nannochloropsis oceanica)
GTGCGGAACTGGAATATAACGGCTTTTCGACGTGTGCGCAGCATCTCCCG CCCCCTACCGTCTATCCCACCCTACGTACCAAATGTGCCCCCACGCCTCC GACTATTCTCTCGCAGCCACAGGCATCATAGCATTGTCACCATGGTGACA CAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACAGGCCCTGCA TCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATGCCTCGTTAT GCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCGTCGTCGCCC TCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGCTAGCGTCTC CATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACCAAAGAGCAT CAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGGCAGAGGGCC AGCGATACCGACGTCGATAAACCTCAACGCCGCGCTCCTCTATCGCCTCT GCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGAAGCCTCTAG CCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATCTCTAGTGCG GGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGGAAAAGGGAC CAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAGGGGAGTTGG GCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGGCTGCAGACC CGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAAGCGTGCCAG CACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCCCGCGGACTG CCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCCCGAAGCAGC ATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGGCTCCAGCAA TACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTTTTTCGCCAC GACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAATAGTGGTGGA CTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCCAGTAACGGG GACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTAAAAGCAGCC TCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATGAACAAGGGG TTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTATATTTTCACC GAAAGCTCATTGAAATTGATCTCTAGGGTATGTGAAACATTAGGAAAAAG GAAGGACAGAGGGAGGAAAGTACGTGCCTCGGGTTGCGTGCATGGCATGT AAAAAATAAGGACAAAGAAAGGAATTATGGAACGATTTCAAAAATAGTCA
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Coding sequence (CDS) from alignment at chr7:427304..428703+

>NO07G01360.1 ID=NO07G01360.1|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr7:427304..428703+ (Nannochloropsis oceanica)
ATGGTGACACAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACA
GGCCCTGCATCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATG
CCTCGTTATGCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCG
TCGTCGCCCTCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGC
TAGCGTCTCCATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACC
AAAGAGCATCAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGG
CAGAGGGCCAGCGATACCGACGTCGATAAACCTCAACGCCGCGCTCCTCT
ATCGCCTCTGCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGA
AGCCTCTAGCCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATC
TCTAGTGCGGGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGG
AAAAGGGACCAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAG
GGGAGTTGGGCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGG
CTGCAGACCCGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAA
GCGTGCCAGCACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCC
CGCGGACTGCCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCC
CGAAGCAGCATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGG
CTCCAGCAATACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTT
TTTCGCCACGACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAAT
AGTGGTGGACTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCC
AGTAACGGGGACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTA
AAAGCAGCCTCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATG
AACAAGGGGTTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTAT
ATTTTCACCGAAAGCTCATTGA
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Synonyms
Publications