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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:427304..428703 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01360.1 vs.
Match: EWM27262.1 (hypothetical protein Naga_100038g25 [Nannochloropsis gaditana]) HSP 1 Score: 160.2 bits (404), Expect = 1.200e-35 Identity = 153/379 (40.37%), Postives = 203/379 (53.56%), Query Frame = 0
Query: 4 QDGSIPATESAFTQALHQPAVVKDQFDLLYASLCQEGNNDDDGSSCSSSP---SVCPPRQRHRRRAASVSIN-----AEESEDEEDKHQRASATAPVKATATKKRQRASDTDVDKPQR-RAPLSPLRPRYDEEELRHSWKPLAPAGDDYMDLSATIS-SAGRRKAAAAAAPARGKGTKATAGAKGRCSGEGELGNFTHSVGPLRGEWLQTRKAVVSERTSVVPKRASTNITAISTGRAISPRTADATPSTTAKASSSRSSIGMHSAARSSGSTGSSNTNTSQHSRATSTFFSPRPRFLGLSPESGGNSGGLGGSGGSVGCKKRPVTGTARATTMGVGSASKSSLTGGTVSSSGGNGMNKGLPSAALFDVLKKSIFSPKA 373
QD PA E+AFTQAL QP VVKDQFDLLYAS+ G DD G+ + ++ Q H+ + +S + + ++EE+ + + APV +KKR+RAS D +K + RA +SP P YDEE+LR WKPLAPA DD++D+S +IS G A K +A KG E ++ S G GEWLQ+R A+VSER S+VPK +T+ S TA TP+ KA R + + + S+GS ++ S SR+ +FFSPRPRFLGLSPE G + G G GGSV KK G + + SK L G T ++S K +P +ALF VLKKSIFS KA
Sbjct: 2 QDLDSPAAENAFTQALQQPNVVKDQFDLLYASIF--GRKDDSGNQITEDDIDGAIVLSSQNHQGKVSSKYLEDNRWMIDRHDEEEEVTRLKTPVAPV----SKKRRRASFVDFEKVEACRALISPRPPNYDEEKLRSVWKPLAPAEDDFLDVSLSISRQRGPNTGYKVAEEKAMKSKQAVRCRKGEGGEESDV-----SCG---GEWLQSRTALVSERNSIVPKHVNTST---------SSDTAHVTPTMPCKA---RGAAPLTAGGTRRLSSGSGSSTGSHQSRSMGSFFSPRPRFLGLSPE--GAAYGTEGRGGSVMEKKS--LGREDSGGKSASAVSKRCLPGCTPAAS--YTQEKPMPPSALFSVLKKSIFSHKA 348
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01360.1 ID=NO07G01360.1|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp GTGCGGAACTGGAATATAACGGCTTTTCGACGTGTGCGCAGCATCTCCCG CCCCCTACCGTCTATCCCACCCTACGTACCAAATGTGCCCCCACGCCTCC GACTATTCTCTCGCAGCCACAGGCATCATAGCATTGTCACCATGGTGACA CAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACAGGCCCTGCA TCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATGCCTCGTTAT GCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCGTCGTCGCCC TCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGCTAGCGTCTC CATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACCAAAGAGCAT CAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGGCAGAGGGCC AGCGATACCGACGTCGATAAACCTCAACGCCGCGCTCCTCTATCGCCTCT GCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGAAGCCTCTAG CCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATCTCTAGTGCG GGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGGAAAAGGGAC CAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAGGGGAGTTGG GCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGGCTGCAGACC CGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAAGCGTGCCAG CACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCCCGCGGACTG CCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCCCGAAGCAGC ATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGGCTCCAGCAA TACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTTTTTCGCCAC GACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAATAGTGGTGGA CTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCCAGTAACGGG GACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTAAAAGCAGCC TCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATGAACAAGGGG TTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTATATTTTCACC GAAAGCTCATTGAAATTGATCTCTAGGGTATGTGAAACATTAGGAAAAAG GAAGGACAGAGGGAGGAAAGTACGTGCCTCGGGTTGCGTGCATGGCATGT AAAAAATAAGGACAAAGAAAGGAATTATGGAACGATTTCAAAAATAGTCA back to topprotein sequence of NO07G01360.1 >NO07G01360.1-protein ID=NO07G01360.1-protein|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp MVTQDGSIPATESAFTQALHQPAVVKDQFDLLYASLCQEGNNDDDGSSCS SSPSVCPPRQRHRRRAASVSINAEESEDEEDKHQRASATAPVKATATKKR QRASDTDVDKPQRRAPLSPLRPRYDEEELRHSWKPLAPAGDDYMDLSATI SSAGRRKAAAAAAPARGKGTKATAGAKGRCSGEGELGNFTHSVGPLRGEW LQTRKAVVSERTSVVPKRASTNITAISTGRAISPRTADATPSTTAKASSS RSSIGMHSAARSSGSTGSSNTNTSQHSRATSTFFSPRPRFLGLSPESGGN SGGLGGSGGSVGCKKRPVTGTARATTMGVGSASKSSLTGGTVSSSGGNGM NKGLPSAALFDVLKKSIFSPKAH* back to topmRNA from alignment at chr7:427304..428703+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01360.1 ID=NO07G01360.1|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp|location=Sequence derived from alignment at chr7:427304..428703+ (Nannochloropsis oceanica) GTGCGGAACTGGAATATAACGGCTTTTCGACGTGTGCGCAGCATCTCCCG
CCCCCTACCGTCTATCCCACCCTACGTACCAAATGTGCCCCCACGCCTCC
GACTATTCTCTCGCAGCCACAGGCATCATAGCATTGTCACCATGGTGACA
CAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACAGGCCCTGCA
TCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATGCCTCGTTAT
GCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCGTCGTCGCCC
TCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGCTAGCGTCTC
CATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACCAAAGAGCAT
CAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGGCAGAGGGCC
AGCGATACCGACGTCGATAAACCTCAACGCCGCGCTCCTCTATCGCCTCT
GCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGAAGCCTCTAG
CCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATCTCTAGTGCG
GGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGGAAAAGGGAC
CAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAGGGGAGTTGG
GCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGGCTGCAGACC
CGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAAGCGTGCCAG
CACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCCCGCGGACTG
CCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCCCGAAGCAGC
ATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGGCTCCAGCAA
TACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTTTTTCGCCAC
GACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAATAGTGGTGGA
CTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCCAGTAACGGG
GACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTAAAAGCAGCC
TCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATGAACAAGGGG
TTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTATATTTTCACC
GAAAGCTCATTGAAATTGATCTCTAGGGTATGTGAAACATTAGGAAAAAG
GAAGGACAGAGGGAGGAAAGTACGTGCCTCGGGTTGCGTGCATGGCATGT
AAAAAATAAGGACAAAGAAAGGAATTATGGAACGATTTCAAAAATAGTCA
back to topCoding sequence (CDS) from alignment at chr7:427304..428703+ >NO07G01360.1 ID=NO07G01360.1|Name=NO07G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr7:427304..428703+ (Nannochloropsis oceanica) ATGGTGACACAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACA GGCCCTGCATCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATG CCTCGTTATGCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCG TCGTCGCCCTCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGC TAGCGTCTCCATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACC AAAGAGCATCAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGG CAGAGGGCCAGCGATACCGACGTCGATAAACCTCAACGCCGCGCTCCTCT ATCGCCTCTGCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGA AGCCTCTAGCCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATC TCTAGTGCGGGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGG AAAAGGGACCAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAG GGGAGTTGGGCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGG CTGCAGACCCGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAA GCGTGCCAGCACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCC CGCGGACTGCCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCC CGAAGCAGCATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGG CTCCAGCAATACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTT TTTCGCCACGACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAAT AGTGGTGGACTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCC AGTAACGGGGACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTA AAAGCAGCCTCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATG AACAAGGGGTTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTAT ATTTTCACCGAAAGCTCATTGA back to top
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