NO07G01320.2, NO07G01320.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01320.2
Unique NameNO07G01320.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1678
Alignment locationchr7:417003..419065 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:417003..419065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01320.2 vs.
Match: EWM27243.1 (SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gaditana])

HSP 1 Score: 250.8 bits (639), Expect = 6.700e-63
Identity = 161/372 (43.28%), Postives = 216/372 (58.06%), Query Frame = 0 
Query:    1 MAVRKDMILQGLSGLEARRIYQRIIRFHIFFDYVLTQQVPPTFDQHTGLGSLRSALATLFGFYKEEIIRQTRKENTSIKDTYLTVDEFLAYHILLQAHDVLLFNKGAAADGERVNGWEKVFLQVHRLLGYARRTIASRKEGEERVGMERGCQGALTQTRFALQVAKALAGGNNARFFRLCREGPQKRQEKDGCKDLLPTLVRCLLHKLLPGVRRRSLEVWSKVMFKKEKMPVGEVGRLLCLEKAENVVGFLTLHRLDVH-----RQGGSPGGGDNQGLDAWDSAAATTPSPSTSMVKKK---C-WYYEPRASSLTYLAVAQTIEDRRHIRGLLCPRQDAWVLEGRELGLE-LGEGEGEAKAAEGLAVLWEWM 363
            MAVRKD+I+QGL+G  A+ IY+RIIRFHI FDY+LT+QVPP FD H GL ++RS LATL  F++         ++ +  + +L  DEFLAY+ LLQ HDVL   +   A     +GW K+FL  +R+L          K  E      R    +L +T++ALQ AKALA GN ARF RLC       +E+D        L RCL+ KL P  RRRS+E+WSKVMF+KEKM V EV RLLC   A+    F+ L  L++             GG  Q  +AW+   +++ +  T   +KK   C  YY+PR + L   ++AQT EDR++I+  LCPRQD+WVL+   +G E L EG+    A E L  LW+ M
Sbjct:    6 MAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHL--DEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVL-----EETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREED---RTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQ--NAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGK---IATEKLQELWKGM 362
The following BLAST results are available for this feature:
BLAST of NO07G01320.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27243.16.700e-6343.28SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01320NO07G01320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01320.2NO07G01320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01320.2.cds1NO07G01320.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.2.cds2NO07G01320.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.2.cds3NO07G01320.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.2.cds4NO07G01320.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01320.2 ID=NO07G01320.2|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp
ATGCTTTTGACCAAACAGCAGTCACCCTACACAGGACCGGTTCTCGCTGC
AGTACAATCTCAACGCCGTGTTTGACTAAGCCTTGTTACAGAATGAAGGG
GACATGTGAGAGCATGTGCAGCCCGCGGGAGCGGGAAGAAAGGCAAGCGC
AGCAGGATATCAGCCCCTTCGAAGCCACGGACGCGACGCGGGCCTTGCGA
CGACATTCGAGAATACTGGATCCTCAGGTGGTTACTTTTGGGAGGAAGCG
GAGGCGATTATTTTCGAGGGAAGGAAAGCACGCCAATGCTCATACTTATT
CATTCAAAATGAAATAGAGGGCCGTGAAGCGATATCGTCGGGCAGCGGAC
GGGCGGGCTGAGACGGCCGCCGATGTGCGTTCTCTCGTTTGGTTGGAAAG
AACCGTGACGCATTTGTGGCAGGTCGTTCGAGGCGTGCTTGCCGAGGCCT
CGGGCCACGAAGAAGAAAAAGGGGAAGGGATCCAGGTCGAGAAAAATGTT
TCATGTTATGTGGAGCTGTACGACTTTGTAAGCGATCGGTTTATGGCTGT
GCGGAAAGACATGATTTTGCAGGGTTTGAGTGGACTGGAAGCAAGGAGGA
TTTATCAGCGCATTATTCGGTTTCATATTTTCTTCGATTACGTTTTGACG
CAGCAGGTGCCTCCCACTTTCGACCAGCATACGGGGCTGGGATCCTTGCG
GTCGGCGCTCGCCACGCTCTTTGGGTTCTACAAGGAGGAAATCATCCGTC
AAACACGAAAAGAAAACACCTCTATCAAGGATACATACCTTACTGTCGAC
GAATTTCTAGCATACCACATCCTCCTTCAAGCCCACGACGTATTGCTGTT
CAACAAGGGCGCTGCTGCTGACGGGGAGCGCGTCAACGGCTGGGAGAAAG
TTTTCCTGCAAGTGCACCGACTTTTAGGGTATGCCAGGAGGACGATTGCA
TCAAGAAAAGAAGGTGAGGAGAGGGTAGGGATGGAACGAGGGTGTCAGGG
GGCGCTTACTCAGACGCGGTTTGCACTGCAAGTGGCCAAAGCACTGGCTG
GAGGAAACAACGCAAGGTTTTTTCGGTTGTGCCGAGAAGGTCCTCAAAAA
AGACAGGAGAAGGATGGATGTAAAGATTTGCTTCCTACTTTGGTGCGGTG
TTTATTGCACAAGCTTCTGCCGGGCGTGCGACGGCGGAGCTTGGAAGTGT
GGAGCAAGGTGATGTTCAAGAAGGAGAAGATGCCGGTGGGGGAAGTGGGA
CGTCTTCTGTGTCTTGAAAAGGCCGAGAACGTGGTTGGGTTTTTGACACT
TCATCGCCTGGATGTGCATAGACAGGGCGGCAGCCCTGGGGGGGGGGATA
ATCAAGGGCTTGATGCCTGGGATTCTGCGGCAGCTACCACACCATCACCA
TCAACGAGCATGGTTAAAAAAAAATGTTGGTACTACGAGCCGCGGGCATC
CTCGTTGACGTATCTAGCTGTAGCCCAAACCATAGAAGACCGACGGCACA
TACGGGGCCTGCTTTGTCCTCGACAAGACGCATGGGTGTTAGAAGGGAGG
GAGCTAGGACTGGAACTTGGAGAGGGAGAGGGAGAGGCGAAGGCCGCCGA
GGGGTTGGCTGTACTGTGGGAATGGATGGGGCTGGTATAATGAAATCAAT
GTAAAGCAATGGCAAGATGATGGGCAGT
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protein sequence of NO07G01320.2

>NO07G01320.2-protein ID=NO07G01320.2-protein|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MAVRKDMILQGLSGLEARRIYQRIIRFHIFFDYVLTQQVPPTFDQHTGLG
SLRSALATLFGFYKEEIIRQTRKENTSIKDTYLTVDEFLAYHILLQAHDV
LLFNKGAAADGERVNGWEKVFLQVHRLLGYARRTIASRKEGEERVGMERG
CQGALTQTRFALQVAKALAGGNNARFFRLCREGPQKRQEKDGCKDLLPTL
VRCLLHKLLPGVRRRSLEVWSKVMFKKEKMPVGEVGRLLCLEKAENVVGF
LTLHRLDVHRQGGSPGGGDNQGLDAWDSAAATTPSPSTSMVKKKCWYYEP
RASSLTYLAVAQTIEDRRHIRGLLCPRQDAWVLEGRELGLELGEGEGEAK
AAEGLAVLWEWMGLV*
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mRNA from alignment at chr7:417003..419065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01320.2 ID=NO07G01320.2|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr7:417003..419065+ (Nannochloropsis oceanica)
ATGCTTTTGACCAAACAGCAGTCACCCTACACAGGACCGGTTCTCGCTGC
AGTACAATCTCAACGCCGTGTTTGACTAAGCCTTGTTACAGAATGAAGGT
AAGTCTAGCGTGAAATAAACAAATACGGTCCTCAAGCAAGCCTCATTCGT
ACCCCATCTCAATCCTACTTTCCAAGGGGACATGTGAGAGCATGTGCAGC
CCGCGGGAGCGGGAAGAAAGGCAAGCGCAGCAGGATATCAGCCCCTTCGA
AGCCACGGACGCGACGCGGGCCTTGCGACGACATTCGAGAATACTGGATC
CTCAGGTGGTTACTTTTGGGAGGAAGCGGAGGCGATTATTTTCGAGGGAA
GGAAAGCACGCCAATGCTCATACTTATTCATTCAAAATGAAATAGAGGGC
CGTGAAGCGATATCGTCGGGCAGCGGACGGGCGGGCTGAGACGGCCGCCG
ATGTGCGTTCTCTCGTTTGGTTGGAAAGAACCGTGACGCATTTGTGGCAG
GTCGTTCGAGGCGTGCTTGCCGAGGCCTCGGGCCACGAAGAAGAAAAAGG
GGAAGGGATCCAGGTCGAGAAAAATGTTTCATGTTATGTGGAGCTGTACG
ACTTTGTAAGCGATCGGTTTATGGCTGTGCGGAAAGACATGATTTTGCAG
GGTTTGAGTGGACTGGAAGCAAGGAGGATTTATCAGCGCATTATTCGGTT
TCATATTTTCTTCGATTACGTTTTGACGCAGCAGGTAAACGAGAAGTTTC
GACGGGGGGGATGTCTTTGTTGCTCCATGCCATTATATGTTATGCTGTGC
GTCTACGCCGAGTTTGTACTGATATTTTCCTACTGTGCGCTCTTCTTCTC
ATTCCTACTAGGTGCCTCCCACTTTCGACCAGCATACGGGGTAAGCAACC
TCTTACGCCGGAAATACGGGAATCTTCTCCCTATTTTCTTTTTTCACGCC
CTTCTTCTCTTGGTACTTGAAACATAGGCTGGGATCCTTGCGGTCGGCGC
TCGCCACGCTCTTTGGGTTCTACAAGGAGGTAAGACGAAAACCAGCACAA
AAGCCATTTTCCATCCGTTTTCCCCACTTCCTTGTCTCACGCACACGACC
CACCACCCTTGTCGTTACCCAGGAAATCATCCGTCAAACACGAAAAGAAA
ACACCTCTATCAAGGATACATACCTTACTGTCGACGAATTTCTAGCATAC
CACATCCTCCTTCAAGCCCACGACGTATTGCTGTTCAACAAGGGCGCTGC
TGCTGACGGGGAGCGCGTCAACGGCTGGGAGAAAGTTTTCCTGCAAGTGC
ACCGACTTTTAGGGTATGCCAGGAGGACGATTGCATCAAGAAAAGAAGGT
GAGGAGAGGGTAGGGATGGAACGAGGGTGTCAGGGGGCGCTTACTCAGAC
GCGGTTTGCACTGCAAGTGGCCAAAGCACTGGCTGGAGGAAACAACGCAA
GGTTTTTTCGGTTGTGCCGAGAAGGTCCTCAAAAAAGACAGGAGAAGGAT
GGATGTAAAGATTTGCTTCCTACTTTGGTGCGGTGTTTATTGCACAAGCT
TCTGCCGGGCGTGCGACGGCGGAGCTTGGAAGTGTGGAGCAAGGTGATGT
TCAAGAAGGAGAAGATGCCGGTGGGGGAAGTGGGACGTCTTCTGTGTCTT
GAAAAGGCCGAGAACGTGGTTGGGTTTTTGACACTTCATCGCCTGGATGT
GCATAGACAGGGCGGCAGCCCTGGGGGGGGGGATAATCAAGGGCTTGATG
CCTGGGATTCTGCGGCAGCTACCACACCATCACCATCAACGAGCATGGTT
AAAAAAAAATGTTGGTACTACGAGCCGCGGGCATCCTCGTTGACGTATCT
AGCTGTAGCCCAAACCATAGAAGACCGACGGCACATACGGGGCCTGCTTT
GTCCTCGACAAGACGCATGGGTGTTAGAAGGGAGGGAGCTAGGACTGGAA
CTTGGAGAGGGAGAGGGAGAGGCGAAGGCCGCCGAGGGGTTGGCTGTACT
GTGGGAATGGATGGGGCTGGTATAATGAAATCAATGTAAAGCAATGGCAA
GATGATGGGCAGT
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Coding sequence (CDS) from alignment at chr7:417003..419065+

>NO07G01320.2 ID=NO07G01320.2|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr7:417003..419065+ (Nannochloropsis oceanica)
ATGGCTGTGCGGAAAGACATGATTTTGCAGGGTTTGAGTGGACTGGAAGC
AAGGAGGATTTATCAGCGCATTATTCGGTTTCATATTTTCTTCGATTACG
TTTTGACGCAGCAGGTGCCTCCCACTTTCGACCAGCATACGGGGCTGGGA
TCCTTGCGGTCGGCGCTCGCCACGCTCTTTGGGTTCTACAAGGAGGAAAT
CATCCGTCAAACACGAAAAGAAAACACCTCTATCAAGGATACATACCTTA
CTGTCGACGAATTTCTAGCATACCACATCCTCCTTCAAGCCCACGACGTA
TTGCTGTTCAACAAGGGCGCTGCTGCTGACGGGGAGCGCGTCAACGGCTG
GGAGAAAGTTTTCCTGCAAGTGCACCGACTTTTAGGGTATGCCAGGAGGA
CGATTGCATCAAGAAAAGAAGGTGAGGAGAGGGTAGGGATGGAACGAGGG
TGTCAGGGGGCGCTTACTCAGACGCGGTTTGCACTGCAAGTGGCCAAAGC
ACTGGCTGGAGGAAACAACGCAAGGTTTTTTCGGTTGTGCCGAGAAGGTC
CTCAAAAAAGACAGGAGAAGGATGGATGTAAAGATTTGCTTCCTACTTTG
GTGCGGTGTTTATTGCACAAGCTTCTGCCGGGCGTGCGACGGCGGAGCTT
GGAAGTGTGGAGCAAGGTGATGTTCAAGAAGGAGAAGATGCCGGTGGGGG
AAGTGGGACGTCTTCTGTGTCTTGAAAAGGCCGAGAACGTGGTTGGGTTT
TTGACACTTCATCGCCTGGATGTGCATAGACAGGGCGGCAGCCCTGGGGG
GGGGGATAATCAAGGGCTTGATGCCTGGGATTCTGCGGCAGCTACCACAC
CATCACCATCAACGAGCATGGTTAAAAAAAAATGTTGGTACTACGAGCCG
CGGGCATCCTCGTTGACGTATCTAGCTGTAGCCCAAACCATAGAAGACCG
ACGGCACATACGGGGCCTGCTTTGTCCTCGACAAGACGCATGGGTGTTAG
AAGGGAGGGAGCTAGGACTGGAACTTGGAGAGGGAGAGGGAGAGGCGAAG
GCCGCCGAGGGGTTGGCTGTACTGTGGGAATGGATGGGGCTGGTATAA
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Synonyms
Publications