NO07G01310.1, NO07G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01310.1
Unique NameNO07G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1006
Alignment locationchr7:415351..416920 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:415351..416920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01310.1 vs.
Match: EWM27238.1 (atp synthase subunit delta [Nannochloropsis gaditana])

HSP 1 Score: 297.0 bits (759), Expect = 4.200e-77
Identity = 155/173 (89.60%), Postives = 165/173 (95.38%), Query Frame = 0 
Query:   16 MLAARGIFKAVARRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVAL 189
            ML ARGIF+  ARRGVHTTR+LAST PAAAD ++GDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHE GQAPEK+FVSGGFALTHANSVTDIAVVEAAKL+DID +E+PKIYAEAMKD+NAA EGSKE+VEAQIEVEVAKSLAGALGVAL
Sbjct:    1 MLVARGIFQLAARRGVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDVEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVAL 173
The following BLAST results are available for this feature:
BLAST of NO07G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27238.14.200e-7789.60atp synthase subunit delta [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01310NO07G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01310.1NO07G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01310.1.cds1NO07G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01310.1.cds2NO07G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01310.1.cds3NO07G01310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01310.1.cds4NO07G01310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01310.1 ID=NO07G01310.1|Name=NO07G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp
CACAAGCACAAGCCGTCCTTGAGTTGGATTAACCTACGCCAGCCGGACAG
TGTCCATATCCAAATCTAAGTCCGCAGAGCCACCCTATGCAGGGTGTGAG
ATTGCAGGCAGGAGGACGGGCGCTAGCTCACTACCCCGCACGCTCTGTGT
CCTCCACACACCCTCCGTCATCCAGCTCTCCCTTGTTACTTGTTCGCATC
TGTCACATCACTCATGCGTCTTTACACGACCACATCCCCACATAATCACA
GCGCCAAGATGCTTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGCCGT
GGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGCCCGCGGCTGCGGA
CCCGGCCGCCGGCGACAACCTGATCCTGAACTTCTCTCTTCCGGCTGCCA
GCATCTACCGCAACAAGCCTGTGGCATCTGTCGTCATCCCGGGCCTGGCG
GGCGAGTACGGCGTGACAAAGAACCACTCCCCCGTCATTGCCGAGCTTAA
AGCGGGCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGT
ACTTTGTCAGCGGAGGCTTCGCCCTCACGCACGCCAACTCCGTGACGGAT
ATCGCCGTGGTGGAAGCGGCTAAGCTGGATGACATCGACCAGGACGAGAT
CCCCAAGATCTATGCCGAGGCTATGAAGGACTTTAATGCCGCTCCGGAGG
GCAGCAAGGAACGGGTGGAGGCTCAGATAGAAGTAGAGGTGGCCAAATCA
CTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTAAGGAGCGAGGGAAGGAGG
GATTGAAGGAGAGGGAGGAGGGAGGAGTGGGATGATATAATAGTGAGGAG
GAGCAAAAGGTAGTTCATTTTTTTGGGTGTCGGATGCGTATATTGTGTTG
CTTCCAGTTCGCGAAAGGAGAAGAAGGAGTGGATATTGCTGGAGGAAAAA
AGGAAGAAAAAGAAGAAAAATGAAGATGAAAAAACAAGCGAAAAGAGAGG
TAGAGA
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protein sequence of NO07G01310.1

>NO07G01310.1-protein ID=NO07G01310.1-protein|Name=NO07G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MRLYTTTSPHNHSAKMLAARGIFKAVARRGVHTTRVLASTKPAAADPAAG
DNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVV
QIVHEPGQAPEKYFVSGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIY
AEAMKDFNAAPEGSKERVEAQIEVEVAKSLAGALGVALA*
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mRNA from alignment at chr7:415351..416920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01310.1 ID=NO07G01310.1|Name=NO07G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp|location=Sequence derived from alignment at chr7:415351..416920- (Nannochloropsis oceanica)
CACAAGCACAAGCCGTCCTTGAGTTGGATTAACCTACGCCAGCCGGACAG
TGTCCATATCCAAATCTAAGTCCGCAGAGCCACCCTATGCAGGGTGTGAG
ATTGCAGGCAGGAGGACGGGCGCTAGCTCACTACCCCGCACGCTCTGTGT
CCTCCACACACCCTCCGTCATCCAGCTCTCCCTTGTTACTTGTTCGCATC
TGTCACATCACTCATGCGTCTTTACACGACCACATCCCCACATAATCACA
GCGCCAAGATGCTTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGCCGT
GGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGCGTAAGTAGATAGG
GCGGCTGGGGAGGAGTGATATGATGCGGGCAATTTACAGGCAAGACTGCA
TAGTTGTTATGGACGCTACATACTTGGTCTAGCTAACCATCGCCTCCTAT
CAATACATTTCCAATGACAGCCGCGGCTGCGGACCCGGCCGCCGGCGACA
ACCTGATCCTGAACTTCTCTCTTCCGGCTGCCAGCATCTACCGCAACAAG
CCTGTGGCATCTGTCGTCATCCCGGTACGTGCTTGGCTTTGTTATATGCT
AAGGTTGGGGACATGCTACCCATATTGATATTTTTTTACAATTTATGGCT
GGGAAAGGTTATGAGTGAAAGGCCTTCATGGGTACACATCACTGAGGATG
GTCGGAGGCGGAGGCATTTTCGGGGGCAAGCCGTTTCTGCGCTTGGAACG
TATTCCGTAGAAGGGCGCGATAATCAAACTGGTTGAAAAAAGTAAAATTT
ACAATCTTATTTTTCATCGCCTCTTTCTTAAATACAGGGCCTGGCGGGCG
AGTACGGCGTGACAAAGAACCACTCCCCCGTCATTGCCGAGCTTAAAGCG
GGCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGTACTT
TGTCAGCGGAGGCTTCGCCCTCACGCACGCCAACTCCGTGACGGTAAGTC
ATACGAGAGTGCGGTTTGATAGTTGTTGCCGCTGCTGCGGCGGTGGCAAC
GACTGCTTTGTCTGATTCGTGACATGGAAAGGAAAAGGGTATCCTCGGAT
CGGCCCTATCATTTACGCACTCCGATGCACATTCGCGTCTCAATCCCATC
TTCAACGACAGGATATCGCCGTGGTGGAAGCGGCTAAGCTGGATGACATC
GACCAGGACGAGATCCCCAAGATCTATGCCGAGGCTATGAAGGACTTTAA
TGCCGCTCCGGAGGGCAGCAAGGAACGGGTGGAGGCTCAGATAGAAGTAG
AGGTGGCCAAATCACTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTAAGGA
GCGAGGGAAGGAGGGATTGAAGGAGAGGGAGGAGGGAGGAGTGGGATGAT
ATAATAGTGAGGAGGAGCAAAAGGTAGTTCATTTTTTTGGGTGTCGGATG
CGTATATTGTGTTGCTTCCAGTTCGCGAAAGGAGAAGAAGGAGTGGATAT
TGCTGGAGGAAAAAAGGAAGAAAAAGAAGAAAAATGAAGATGAAAAAACA
AGCGAAAAGAGAGGTAGAGA
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Coding sequence (CDS) from alignment at chr7:415351..416920-

>NO07G01310.1 ID=NO07G01310.1|Name=NO07G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at chr7:415351..416920- (Nannochloropsis oceanica)
ATGCGTCTTTACACGACCACATCCCCACATAATCACAGCGCCAAGATGCT
TGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGCCGTGGTGTGCACACTA
CCCGAGTCCTGGCCTCCACCAAGCCCGCGGCTGCGGACCCGGCCGCCGGC
GACAACCTGATCCTGAACTTCTCTCTTCCGGCTGCCAGCATCTACCGCAA
CAAGCCTGTGGCATCTGTCGTCATCCCGGGCCTGGCGGGCGAGTACGGCG
TGACAAAGAACCACTCCCCCGTCATTGCCGAGCTTAAAGCGGGCGTTGTC
CAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGTACTTTGTCAGCGG
AGGCTTCGCCCTCACGCACGCCAACTCCGTGACGGATATCGCCGTGGTGG
AAGCGGCTAAGCTGGATGACATCGACCAGGACGAGATCCCCAAGATCTAT
GCCGAGGCTATGAAGGACTTTAATGCCGCTCCGGAGGGCAGCAAGGAACG
GGTGGAGGCTCAGATAGAAGTAGAGGTGGCCAAATCACTGGCGGGCGCGT
TGGGTGTGGCGTTGGCTTAA
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Synonyms
Publications