NO07G01250.1, NO07G01250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01250.1
Unique Name	NO07G01250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1624
Alignment location	chr7:397170..399397 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:397170..399397 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO07G01250.1 vs.
Match: EWM27250.1 (ser thr kinase [Nannochloropsis gaditana])

HSP 1 Score: 353.6 bits (906), Expect = 1.100e-93
Identity = 210/348 (60.34%), Postives = 235/348 (67.53%), Query Frame = 0

Query:    1 MFLCCCFPPPFEAPPPAQQLPSSPSSSPAPATTAPSASASNAAAPASPDLPSSPPTSTLPGKAQGLLEDEEPSFTILSDEELEAIVAEGEENGTDAPPRPTAAATAVPAAAAFAPPAAADAAAAAAAAAAAATPQDTPDEEAGQNEWECHHTDSVVLTYPEGEPEGDPVKVNEYVLEGHLGAGAFGNVKKAKREVGEPPFQTFAIKIMSRHRLRRYKTSVMSGVEGQMMVKTGIDMMENEIRIMRHLYHRNVVLLFEVIDDPVEDSIFMIMEYLEGGPSMDYDKSTKRFTSPLTGGVLPPPLAAKLFFGLVAGLQYLHAHGICHRDIKPENLLLTDGTKLRITDFGCA 349
            M  CCC PP FE P P           P PA +A  ++ +          P  PPT T  G+A       E SF++LS+EEL A VA GE NG       T+A           P A AD            T ++   EE   ++W+CH TD   LTYP G+ E DP+KVNEY ++G LGAGAFGNVK+A+REVG PP+QT+AIKIMSRHRLRR+K+SVMS     M VKTGIDMM NEIRIMRHLYHRNVVLLFEVI+DP EDSIFMIMEYLEGG SMDYDK TKRF SPLTGGVLPPP A KLFFGLVAGLQYLH  GICHRDIKPENLLLTDGTKLRITDFGCA
Sbjct:    1 MVFCCCLPPSFEPPCP-----------PPPAYSATQSAQAEG--------PPVPPTDTA-GRAV------EHSFSVLSEEELGAAVAGGEGNGNGHHHDSTSAR----------PHADADGLVHVDGENVCETDEEEDGEE---HDWDCHMTDLAALTYPPGQAEADPIKVNEYAVDGFLGAGAFGNVKRARREVGPPPYQTYAIKIMSRHRLRRFKSSVMSVGGSHMEVKTGIDMMRNEIRIMRHLYHRNVVLLFEVINDPSEDSIFMIMEYLEGGISMDYDKKTKRFRSPLTGGVLPPPTACKLFFGLVAGLQYLHGKGICHRDIKPENLLLTDGTKLRITDFGCA 309

The following BLAST results are available for this feature:

BLAST of NO07G01250.1 vs.

BLAST of NO07G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27250.1	1.100e-93	60.34	ser thr kinase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01250	NO07G01250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01250.1	NO07G01250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01250.1.cds1	NO07G01250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01250.1.cds2	NO07G01250.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01250.1.cds3	NO07G01250.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01250.1.cds4	NO07G01250.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01250.1.cds5	NO07G01250.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:397170..399397-
coding sequence from alignment at chr7:397170..399397-

mRNA sequence

>NO07G01250.1 ID=NO07G01250.1|Name=NO07G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1624bp
CAATAGCACCACCATGTTTCTCTGTTGTTGTTTTCCACCCCCATTCGAGG
CCCCTCCTCCTGCACAGCAGCTTCCCTCTTCTCCCTCCTCCTCGCCCGCC
CCAGCTACTACTGCTCCTTCTGCTTCTGCTTCTAATGCCGCAGCCCCAGC
CTCCCCTGATCTACCGTCGTCGCCACCGACAAGCACCCTCCCGGGTAAGG
CCCAGGGACTATTGGAAGACGAAGAGCCCAGCTTTACAATCCTGAGTGAC
GAAGAACTGGAGGCCATTGTCGCAGAAGGCGAAGAGAACGGCACCGACGC
TCCACCACGTCCTACGGCCGCCGCAACCGCTGTTCCCGCGGCTGCTGCCT
TTGCCCCCCCTGCCGCTGCTGATGCTGCGGCCGCTGCTGCTGCTGCTGCT
GCTGCTGCCACTCCACAGGACACCCCGGACGAGGAAGCGGGACAAAATGA
GTGGGAGTGTCACCACACGGACTCGGTAGTGTTGACGTATCCGGAAGGAG
AACCAGAGGGCGACCCCGTGAAAGTGAATGAATATGTCTTGGAAGGACAT
TTGGGAGCCGGAGCGTTTGGGAACGTGAAGAAGGCCAAGAGGGAGGTGGG
TGAGCCACCCTTCCAGACATTTGCGATCAAGATTATGAGCCGGCATCGAT
TGAGGCGATATAAGACGAGCGTGATGTCCGGGGTGGAGGGACAAATGATG
GTCAAGACAGGGATTGATATGATGGAAAATGAGATCAGAATCATGCGGCA
TCTTTACCACCGGAACGTAGTCTTGCTCTTCGAAGTCATCGACGACCCCG
TCGAGGACAGCATTTTTATGATCATGGAGTACCTCGAGGGCGGCCCCTCC
ATGGACTACGACAAGAGCACCAAACGCTTCACCAGTCCCTTGACCGGCGG
CGTCCTCCCTCCCCCCCTCGCTGCCAAGCTCTTCTTCGGCCTCGTGGCGG
GATTGCAGTACTTGCACGCGCATGGCATCTGTCATCGTGACATCAAGCCT
GAAAACCTCCTCCTCACGGACGGAACCAAGCTCCGCATCACCGATTTCGG
GTGTGCCATGCTCATGGGCGAGTTCCCCGTCAAATCGAAGGACGAGAACG
AGAGCGAGGAGGAGGTGGAGGAGGGAATGGCGGGTTTGCTTGTTGACACG
GCGGGGACGTACACCTTCTTGGCTCCAGAATGCTGCACGGGGGAGGCCTT
CAGCCCCTGGCCGGTGGATGTGTGGGCGGCGGGAGTGACGCTGTACGTGT
TTCTGTTCGGTCGACTGCCCTTTCAGAAGGAGGGCCTGGGGCCCTTGTTC
GAAGCCATCCAAGAAGAGGTGGTGATGTTCCCGCCCAGAAAGGAAGAAGG
GGAGGAAGGGGAGGGGGGGAAGGAGGGGGAGGAGGGAGGGAAGGAGGTGT
TGGTTTTGGAGGAGGGGGTGAGAGATGTGCTGGAGGGTTTGTTCAAGAAG
GATCCTCAGGAAAGATGGACTTTGGGGATGCTGAAAGGACACGCGTGGTT
GGAGAGGGCACAAAAGGAGGATGAGGATGAGGATCGGAGGAGGGACGAGG
AGGAGGAAAAGGCAAGGCGGGAGAAGGAGGAGAAAGAGGAGGAGGGAGTG
AAGGAGGGTGGGAGGGGGGAGTGA

protein sequence of NO07G01250.1

>NO07G01250.1-protein ID=NO07G01250.1-protein|Name=NO07G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MFLCCCFPPPFEAPPPAQQLPSSPSSSPAPATTAPSASASNAAAPASPDL
PSSPPTSTLPGKAQGLLEDEEPSFTILSDEELEAIVAEGEENGTDAPPRP
TAAATAVPAAAAFAPPAAADAAAAAAAAAAAATPQDTPDEEAGQNEWECH
HTDSVVLTYPEGEPEGDPVKVNEYVLEGHLGAGAFGNVKKAKREVGEPPF
QTFAIKIMSRHRLRRYKTSVMSGVEGQMMVKTGIDMMENEIRIMRHLYHR
NVVLLFEVIDDPVEDSIFMIMEYLEGGPSMDYDKSTKRFTSPLTGGVLPP
PLAAKLFFGLVAGLQYLHAHGICHRDIKPENLLLTDGTKLRITDFGCAML
MGEFPVKSKDENESEEEVEEGMAGLLVDTAGTYTFLAPECCTGEAFSPWP
VDVWAAGVTLYVFLFGRLPFQKEGLGPLFEAIQEEVVMFPPRKEEGEEGE
GGKEGEEGGKEVLVLEEGVRDVLEGLFKKDPQERWTLGMLKGHAWLERAQ
KEDEDEDRRRDEEEEKARREKEEKEEEGVKEGGRGE*

mRNA from alignment at chr7:397170..399397-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G01250.1 ID=NO07G01250.1|Name=NO07G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2228bp|location=Sequence derived from alignment at chr7:397170..399397- (Nannochloropsis oceanica)
CAATAGCACCACCATGTTTCTCTGTTGTTGTTTTCCACCCCCATTCGAGG
CCCCTCCTCCTGCACAGCAGCTTCCCTCTTCTCCCTCCTCCTCGCCCGCC
CCAGCTACTACTGCTCCTTCTGCTTCTGCTTCTAATGCCGCAGCCCCAGC
CTCCCCTGATCTACCGTCGTCGCCACCGACAAGCACCCTCCCGGGTAAGG
CCCAGGGACTATTGGAAGACGAAGAGCCCAGCTTTACAATCCTGAGGTGA
GTTGGGATGCAGCCCATTTGCCCCCGTCCCTCCCTTCCTCGCGCCATTCC
TTTCCTCTCCTCATATAATCGTTTCAACGACCGTGCAGTGACGAAGAACT
GGAGGCCATTGTCGCAGAAGGCGAAGAGAACGGCACCGACGCTCCACCAC
GTCCTACGGCCGCCGCAACCGCTGTTCCCGCGGCTGCTGCCTTTGCCCCC
CCTGCCGCTGCTGATGCTGCGGCCGCTGCTGCTGCTGCTGCTGCTGCTGC
CACTCCACAGGACACCCCGGACGAGGAAGCGGGACAAAATGAGTGGGAGT
GTCACCACACGGACTCGGTAGTGTTGACGTATCCGGAAGGAGAACCAGAG
GGCGACCCCGTGAAAGTGAATGAATATGTCTTGGAAGGACATTTGGGAGC
CGGAGCGTTTGGGAACGTGAAGAAGGCCAAGAGGGAGGTGGGTGAGCCAC
CCTTCCAGACATTTGCGATCAAGATTATGAGCCGGCATCGATTGAGGCGA
TATAAGACGAGCGTGATGTCCGGGGTGGAGGGACAAATGATGGTCAAGAC
AGGGATTGATATGGTGAGTTGAAAGAGCAGGGAGGGAGGGAGGGAATCGA
TGATGGGCTTCACTCTTTTGGCTGCAGTAATGAGCCTTCTTTCGTTTCTT
TGCATCGAAAGTAGAACACAGGATCCTCGCTCCCTCCCTATTTCTATAAC
CCTCCCTCCCTCCCTCCTTCCTTCCGCCCCATTGCCGCAGATGGAAAATG
AGATCAGAATCATGCGGCATCTTTACCACCGGAACGTAGTCTTGCTCTTC
GAAGTCATCGACGACCCCGTCGAGGACAGCATTTTTATGATCATGGAGGT
AAGCCCGTCTTCCATCCCTCCTTCCCTCCTTCCTCCCGCCTTTGCGGTTG
GCCTCTCTACCGACAACAAGTGAAGAATGAAGAATTCAGAGACATACACG
CACCCAGCTCCCTCCCTGCCCCCGTTCCTCATTCCGGTCCTCCCTCAGTA
CCTCGAGGGCGGCCCCTCCATGGACTACGACAAGAGCACCAAACGCTTCA
CCAGTCCCTTGACCGGCGGCGTCCTCCCTCCCCCCCTCGCTGCCAAGCTC
TTCTTCGGCCTCGTGGCGGGATTGCAGTACTTGCACGCGCATGGCATCTG
TCATCGTGACATCAAGGTATGCATGTCTTGGCCCTTCCTTCCCTCCCTCC
CTCTCTCCCCTCCCTCCCCTTCCTATCCTCCCTTTCCTTCCTCCCTCCAC
CCTTTTCCCCCTCCCTCCCCCTCTCCCCTCCCTTCTTCCCCCCCTCCCTC
CCTCCCCCCTCACCGACGGGATCGCCTTCCCTTCTTCCCTCTCTCCTTCA
GCCTGAAAACCTCCTCCTCACGGACGGAACCAAGCTCCGCATCACCGATT
TCGGGTGTGCCATGCTCATGGGCGAGTTCCCCGTCAAATCGAAGGACGAG
AACGAGAGCGAGGAGGAGGTGGAGGAGGGAATGGCGGGTTTGCTTGTTGA
CACGGCGGGGACGTACACCTTCTTGGCTCCAGAATGCTGCACGGGGGAGG
CCTTCAGCCCCTGGCCGGTGGATGTGTGGGCGGCGGGAGTGACGCTGTAC
GTGTTTCTGTTCGGTCGACTGCCCTTTCAGAAGGAGGGCCTGGGGCCCTT
GTTCGAAGCCATCCAAGAAGAGGTGGTGATGTTCCCGCCCAGAAAGGAAG
AAGGGGAGGAAGGGGAGGGGGGGAAGGAGGGGGAGGAGGGAGGGAAGGAG
GTGTTGGTTTTGGAGGAGGGGGTGAGAGATGTGCTGGAGGGTTTGTTCAA
GAAGGATCCTCAGGAAAGATGGACTTTGGGGATGCTGAAAGGACACGCGT
GGTTGGAGAGGGCACAAAAGGAGGATGAGGATGAGGATCGGAGGAGGGAC
GAGGAGGAGGAAAAGGCAAGGCGGGAGAAGGAGGAGAAAGAGGAGGAGGG
AGTGAAGGAGGGTGGGAGGGGGGAGTGA

Coding sequence (CDS) from alignment at chr7:397170..399397-

>NO07G01250.1 ID=NO07G01250.1|Name=NO07G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr7:397170..399397- (Nannochloropsis oceanica)
ATGTTTCTCTGTTGTTGTTTTCCACCCCCATTCGAGGCCCCTCCTCCTGC
ACAGCAGCTTCCCTCTTCTCCCTCCTCCTCGCCCGCCCCAGCTACTACTG
CTCCTTCTGCTTCTGCTTCTAATGCCGCAGCCCCAGCCTCCCCTGATCTA
CCGTCGTCGCCACCGACAAGCACCCTCCCGGGTAAGGCCCAGGGACTATT
GGAAGACGAAGAGCCCAGCTTTACAATCCTGAGTGACGAAGAACTGGAGG
CCATTGTCGCAGAAGGCGAAGAGAACGGCACCGACGCTCCACCACGTCCT
ACGGCCGCCGCAACCGCTGTTCCCGCGGCTGCTGCCTTTGCCCCCCCTGC
CGCTGCTGATGCTGCGGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACTC
CACAGGACACCCCGGACGAGGAAGCGGGACAAAATGAGTGGGAGTGTCAC
CACACGGACTCGGTAGTGTTGACGTATCCGGAAGGAGAACCAGAGGGCGA
CCCCGTGAAAGTGAATGAATATGTCTTGGAAGGACATTTGGGAGCCGGAG
CGTTTGGGAACGTGAAGAAGGCCAAGAGGGAGGTGGGTGAGCCACCCTTC
CAGACATTTGCGATCAAGATTATGAGCCGGCATCGATTGAGGCGATATAA
GACGAGCGTGATGTCCGGGGTGGAGGGACAAATGATGGTCAAGACAGGGA
TTGATATGATGGAAAATGAGATCAGAATCATGCGGCATCTTTACCACCGG
AACGTAGTCTTGCTCTTCGAAGTCATCGACGACCCCGTCGAGGACAGCAT
TTTTATGATCATGGAGTACCTCGAGGGCGGCCCCTCCATGGACTACGACA
AGAGCACCAAACGCTTCACCAGTCCCTTGACCGGCGGCGTCCTCCCTCCC
CCCCTCGCTGCCAAGCTCTTCTTCGGCCTCGTGGCGGGATTGCAGTACTT
GCACGCGCATGGCATCTGTCATCGTGACATCAAGCCTGAAAACCTCCTCC
TCACGGACGGAACCAAGCTCCGCATCACCGATTTCGGGTGTGCCATGCTC
ATGGGCGAGTTCCCCGTCAAATCGAAGGACGAGAACGAGAGCGAGGAGGA
GGTGGAGGAGGGAATGGCGGGTTTGCTTGTTGACACGGCGGGGACGTACA
CCTTCTTGGCTCCAGAATGCTGCACGGGGGAGGCCTTCAGCCCCTGGCCG
GTGGATGTGTGGGCGGCGGGAGTGACGCTGTACGTGTTTCTGTTCGGTCG
ACTGCCCTTTCAGAAGGAGGGCCTGGGGCCCTTGTTCGAAGCCATCCAAG
AAGAGGTGGTGATGTTCCCGCCCAGAAAGGAAGAAGGGGAGGAAGGGGAG
GGGGGGAAGGAGGGGGAGGAGGGAGGGAAGGAGGTGTTGGTTTTGGAGGA
GGGGGTGAGAGATGTGCTGGAGGGTTTGTTCAAGAAGGATCCTCAGGAAA
GATGGACTTTGGGGATGCTGAAAGGACACGCGTGGTTGGAGAGGGCACAA
AAGGAGGATGAGGATGAGGATCGGAGGAGGGACGAGGAGGAGGAAAAGGC
AAGGCGGGAGAAGGAGGAGAAAGAGGAGGAGGGAGTGAAGGAGGGTGGGA
GGGGGGAGTGA

Synonyms

Publications