NO07G01240.1, NO07G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01240.1
Unique NameNO07G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1449
Alignment locationchr7:395421..396869 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:395421..396869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01240.1 vs.
Match: EWM27237.1 (imidazoleglycerol-phosphate dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 684.1 bits (1764), Expect = 3.100e-193
Identity = 355/476 (74.58%), Postives = 397/476 (83.40%), Query Frame = 0 
Query:    5 VKAVLFDMDGILADVAQSYRAAIVETAAFFQVQVTQEDITREKAKGNANNDWLLTQRLLASQGVTASLEDVTTKFEELYQGTALTEGLWAKERLIVPHGLIAEIGRRCPLGLAVVTGRPRKDCEKFLETHDIAHFFRVCVCMEDGPPKPDPFPVSRACTLLGVAAQDTLMIGDTVDDIRAALAAGSVPIGVLTPEEEARLTLSPSSSNGGGGNGVAALGPHLRAAGAKTVLRPGLAELLDWVPGSTADPTANGIGGVGVGAGADAGEKKRKAAVPVEGSGSGSRRRAATVTRVTKETSISVEIDLDGDGNTVDISTGIGFLDHMLTALGKHARFDLTLKCKGDVHIDDHHTAEDCALALGEAFDQALGPRRGIMRFGTALCPLDEALSRSVVDISSRPHAVVALGLTREKVGGLSCEMIPHVFESFASAARLTLHVDVLRGFNDHHKAESAFKATAVALRLAVTRDSSAFIPSTKG 481
            V+AVLFDMDGILADVAQSYRAAIVETAAF+QV VTQ+DI R+KAKG+ANNDW+LTQRLLAS  V  SLE+VT KFEELYQGT+ +EGLW KERLIVP GL+AEI RRCPLG+AVVTGRPRKDCEKFL+TH + HFFR CVCMEDGPPKPDPFPV +AC +LGV   DTLM+GDTVDD+RAALAAGSVPI VLTPEEEARLTL  +  +  GG+G+   G HL AAGAKTVLRPGLAELL+WVP       ++G   + VGAG     K+RKA+    G G     RAATV+R TKET+IS  IDLDGDGN V++ +GIGFLDHMLTALGKHARF L L C+GD+ +DDHHTAEDCALALGEAFDQALG R+GI RFG+ALCPLDEAL+RSVVDISSRPHA V L L REKVG LSCEMI HV +SFA+AARLTLHVDVLRG NDHHKAESAFKATA+ALR AV RD SAF+PSTKG
Sbjct:    4 VQAVLFDMDGILADVAQSYRAAIVETAAFYQVTVTQDDIARQKAKGDANNDWVLTQRLLASHQVDVSLEEVTAKFEELYQGTSTSEGLWTKERLIVPTGLLAEIARRCPLGMAVVTGRPRKDCEKFLKTHGLVHFFRACVCMEDGPPKPDPFPVRQACAVLGVDPGDTLMVGDTVDDVRAALAAGSVPIAVLTPEEEARLTLIRTGGDTNGGHGI---GSHLVAAGAKTVLRPGLAELLNWVP-----TMSSGADSMVVGAG-----KRRKAS---GGCGVPGPTRAATVSRKTKETAISASIDLDGDGNNVEVHSGIGFLDHMLTALGKHARFHLRLSCQGDLEVDDHHTAEDCALALGEAFDQALGVRKGIARFGSALCPLDEALARSVVDISSRPHAEVHLKLQREKVGQLSCEMITHVLQSFATAARLTLHVDVLRGANDHHKAESAFKATALALRQAVARDDSAFVPSTKG 463
The following BLAST results are available for this feature:
BLAST of NO07G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27237.13.100e-19374.58imidazoleglycerol-phosphate dehydratase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01240NO07G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01240.1NO07G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01240.1.cds1NO07G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01240.1 ID=NO07G01240.1|Name=NO07G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp
ATGCCCTCTCGAGTCAAGGCCGTCCTCTTCGATATGGATGGTATCCTGGC
CGACGTTGCACAATCCTACCGCGCCGCCATCGTGGAGACCGCCGCATTTT
TCCAGGTCCAAGTAACTCAAGAAGACATCACCCGAGAAAAGGCCAAAGGC
AACGCCAATAATGACTGGCTCCTCACTCAACGCCTGCTGGCCAGCCAGGG
CGTGACTGCCAGCCTAGAAGACGTCACAACTAAATTCGAGGAACTCTATC
AAGGGACCGCCTTGACCGAGGGATTATGGGCAAAGGAGCGTCTCATCGTC
CCACATGGGCTGATAGCAGAGATCGGGCGTCGGTGCCCTCTAGGCCTCGC
AGTCGTGACAGGCCGCCCCCGCAAAGACTGCGAAAAATTCCTAGAGACCC
ATGATATTGCCCATTTCTTTCGCGTGTGCGTCTGCATGGAAGACGGGCCG
CCCAAACCTGATCCTTTTCCAGTCTCGCGCGCCTGTACCCTACTAGGTGT
CGCAGCACAAGACACCCTCATGATAGGCGATACAGTCGATGACATCCGCG
CCGCCCTCGCCGCCGGCTCCGTCCCTATTGGTGTGCTTACCCCGGAAGAG
GAAGCCAGGCTGACTCTCTCCCCCTCTTCCTCAAATGGTGGTGGTGGTAA
TGGGGTAGCAGCTCTCGGACCTCATCTGCGCGCAGCAGGCGCCAAGACAG
TCTTACGTCCGGGACTGGCCGAGCTCTTGGATTGGGTGCCAGGTTCTACT
GCTGATCCTACAGCAAATGGAATAGGAGGGGTTGGGGTCGGGGCAGGGGC
AGATGCGGGAGAAAAGAAACGAAAGGCTGCGGTTCCTGTGGAGGGCAGCG
GCAGTGGGAGCAGGCGGCGGGCCGCGACGGTGACAAGGGTGACGAAGGAG
ACGTCCATAAGTGTTGAGATTGATCTGGACGGAGATGGGAATACAGTGGA
TATCTCTACGGGAATTGGGTTTTTGGATCACATGCTGACGGCATTGGGGA
AGCATGCGCGGTTCGATTTGACGTTGAAATGTAAGGGGGATGTGCATATT
GATGACCACCACACAGCGGAGGACTGTGCCTTGGCATTAGGGGAGGCATT
CGACCAGGCCTTGGGGCCAAGAAGGGGCATCATGAGGTTTGGCACGGCGT
TGTGTCCATTGGACGAGGCCTTGAGCAGGAGCGTGGTGGATATCAGTAGC
CGGCCACACGCAGTGGTGGCACTCGGCTTGACACGGGAGAAGGTAGGGGG
GTTGTCGTGCGAGATGATTCCACATGTATTTGAGTCGTTTGCGTCGGCGG
CGAGGTTGACGTTGCATGTGGATGTACTGCGAGGATTTAATGATCACCAT
AAGGCGGAGAGTGCGTTCAAAGCCACGGCGGTGGCGTTACGCTTGGCGGT
GACGAGGGACTCCTCGGCCTTTATCCCGAGTACAAAGGGCGTGTTGTGA
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protein sequence of NO07G01240.1

>NO07G01240.1-protein ID=NO07G01240.1-protein|Name=NO07G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MPSRVKAVLFDMDGILADVAQSYRAAIVETAAFFQVQVTQEDITREKAKG
NANNDWLLTQRLLASQGVTASLEDVTTKFEELYQGTALTEGLWAKERLIV
PHGLIAEIGRRCPLGLAVVTGRPRKDCEKFLETHDIAHFFRVCVCMEDGP
PKPDPFPVSRACTLLGVAAQDTLMIGDTVDDIRAALAAGSVPIGVLTPEE
EARLTLSPSSSNGGGGNGVAALGPHLRAAGAKTVLRPGLAELLDWVPGST
ADPTANGIGGVGVGAGADAGEKKRKAAVPVEGSGSGSRRRAATVTRVTKE
TSISVEIDLDGDGNTVDISTGIGFLDHMLTALGKHARFDLTLKCKGDVHI
DDHHTAEDCALALGEAFDQALGPRRGIMRFGTALCPLDEALSRSVVDISS
RPHAVVALGLTREKVGGLSCEMIPHVFESFASAARLTLHVDVLRGFNDHH
KAESAFKATAVALRLAVTRDSSAFIPSTKGVL*
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mRNA from alignment at chr7:395421..396869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01240.1 ID=NO07G01240.1|Name=NO07G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp|location=Sequence derived from alignment at chr7:395421..396869+ (Nannochloropsis oceanica)
ATGCCCTCTCGAGTCAAGGCCGTCCTCTTCGATATGGATGGTATCCTGGC
CGACGTTGCACAATCCTACCGCGCCGCCATCGTGGAGACCGCCGCATTTT
TCCAGGTCCAAGTAACTCAAGAAGACATCACCCGAGAAAAGGCCAAAGGC
AACGCCAATAATGACTGGCTCCTCACTCAACGCCTGCTGGCCAGCCAGGG
CGTGACTGCCAGCCTAGAAGACGTCACAACTAAATTCGAGGAACTCTATC
AAGGGACCGCCTTGACCGAGGGATTATGGGCAAAGGAGCGTCTCATCGTC
CCACATGGGCTGATAGCAGAGATCGGGCGTCGGTGCCCTCTAGGCCTCGC
AGTCGTGACAGGCCGCCCCCGCAAAGACTGCGAAAAATTCCTAGAGACCC
ATGATATTGCCCATTTCTTTCGCGTGTGCGTCTGCATGGAAGACGGGCCG
CCCAAACCTGATCCTTTTCCAGTCTCGCGCGCCTGTACCCTACTAGGTGT
CGCAGCACAAGACACCCTCATGATAGGCGATACAGTCGATGACATCCGCG
CCGCCCTCGCCGCCGGCTCCGTCCCTATTGGTGTGCTTACCCCGGAAGAG
GAAGCCAGGCTGACTCTCTCCCCCTCTTCCTCAAATGGTGGTGGTGGTAA
TGGGGTAGCAGCTCTCGGACCTCATCTGCGCGCAGCAGGCGCCAAGACAG
TCTTACGTCCGGGACTGGCCGAGCTCTTGGATTGGGTGCCAGGTTCTACT
GCTGATCCTACAGCAAATGGAATAGGAGGGGTTGGGGTCGGGGCAGGGGC
AGATGCGGGAGAAAAGAAACGAAAGGCTGCGGTTCCTGTGGAGGGCAGCG
GCAGTGGGAGCAGGCGGCGGGCCGCGACGGTGACAAGGGTGACGAAGGAG
ACGTCCATAAGTGTTGAGATTGATCTGGACGGAGATGGGAATACAGTGGA
TATCTCTACGGGAATTGGGTTTTTGGATCACATGCTGACGGCATTGGGGA
AGCATGCGCGGTTCGATTTGACGTTGAAATGTAAGGGGGATGTGCATATT
GATGACCACCACACAGCGGAGGACTGTGCCTTGGCATTAGGGGAGGCATT
CGACCAGGCCTTGGGGCCAAGAAGGGGCATCATGAGGTTTGGCACGGCGT
TGTGTCCATTGGACGAGGCCTTGAGCAGGAGCGTGGTGGATATCAGTAGC
CGGCCACACGCAGTGGTGGCACTCGGCTTGACACGGGAGAAGGTAGGGGG
GTTGTCGTGCGAGATGATTCCACATGTATTTGAGTCGTTTGCGTCGGCGG
CGAGGTTGACGTTGCATGTGGATGTACTGCGAGGATTTAATGATCACCAT
AAGGCGGAGAGTGCGTTCAAAGCCACGGCGGTGGCGTTACGCTTGGCGGT
GACGAGGGACTCCTCGGCCTTTATCCCGAGTACAAAGGGCGTGTTGTGA
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Coding sequence (CDS) from alignment at chr7:395421..396869+

>NO07G01240.1 ID=NO07G01240.1|Name=NO07G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr7:395421..396869+ (Nannochloropsis oceanica)
ATGCCCTCTCGAGTCAAGGCCGTCCTCTTCGATATGGATGGTATCCTGGC
CGACGTTGCACAATCCTACCGCGCCGCCATCGTGGAGACCGCCGCATTTT
TCCAGGTCCAAGTAACTCAAGAAGACATCACCCGAGAAAAGGCCAAAGGC
AACGCCAATAATGACTGGCTCCTCACTCAACGCCTGCTGGCCAGCCAGGG
CGTGACTGCCAGCCTAGAAGACGTCACAACTAAATTCGAGGAACTCTATC
AAGGGACCGCCTTGACCGAGGGATTATGGGCAAAGGAGCGTCTCATCGTC
CCACATGGGCTGATAGCAGAGATCGGGCGTCGGTGCCCTCTAGGCCTCGC
AGTCGTGACAGGCCGCCCCCGCAAAGACTGCGAAAAATTCCTAGAGACCC
ATGATATTGCCCATTTCTTTCGCGTGTGCGTCTGCATGGAAGACGGGCCG
CCCAAACCTGATCCTTTTCCAGTCTCGCGCGCCTGTACCCTACTAGGTGT
CGCAGCACAAGACACCCTCATGATAGGCGATACAGTCGATGACATCCGCG
CCGCCCTCGCCGCCGGCTCCGTCCCTATTGGTGTGCTTACCCCGGAAGAG
GAAGCCAGGCTGACTCTCTCCCCCTCTTCCTCAAATGGTGGTGGTGGTAA
TGGGGTAGCAGCTCTCGGACCTCATCTGCGCGCAGCAGGCGCCAAGACAG
TCTTACGTCCGGGACTGGCCGAGCTCTTGGATTGGGTGCCAGGTTCTACT
GCTGATCCTACAGCAAATGGAATAGGAGGGGTTGGGGTCGGGGCAGGGGC
AGATGCGGGAGAAAAGAAACGAAAGGCTGCGGTTCCTGTGGAGGGCAGCG
GCAGTGGGAGCAGGCGGCGGGCCGCGACGGTGACAAGGGTGACGAAGGAG
ACGTCCATAAGTGTTGAGATTGATCTGGACGGAGATGGGAATACAGTGGA
TATCTCTACGGGAATTGGGTTTTTGGATCACATGCTGACGGCATTGGGGA
AGCATGCGCGGTTCGATTTGACGTTGAAATGTAAGGGGGATGTGCATATT
GATGACCACCACACAGCGGAGGACTGTGCCTTGGCATTAGGGGAGGCATT
CGACCAGGCCTTGGGGCCAAGAAGGGGCATCATGAGGTTTGGCACGGCGT
TGTGTCCATTGGACGAGGCCTTGAGCAGGAGCGTGGTGGATATCAGTAGC
CGGCCACACGCAGTGGTGGCACTCGGCTTGACACGGGAGAAGGTAGGGGG
GTTGTCGTGCGAGATGATTCCACATGTATTTGAGTCGTTTGCGTCGGCGG
CGAGGTTGACGTTGCATGTGGATGTACTGCGAGGATTTAATGATCACCAT
AAGGCGGAGAGTGCGTTCAAAGCCACGGCGGTGGCGTTACGCTTGGCGGT
GACGAGGGACTCCTCGGCCTTTATCCCGAGTACAAAGGGCGTGTTGTGA
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Synonyms
Publications