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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:392739..395087 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01230.1 vs.
Match: EWM27260.1 (ubiquitin-conjugating enzyme e2 j1 [Nannochloropsis gaditana]) HSP 1 Score: 347.4 bits (890), Expect = 4.500e-92 Identity = 187/299 (62.54%), Postives = 218/299 (72.91%), Query Frame = 0
Query: 15 LFSCALPVLFLLLPSAATVSINRGGKSSSC-LPRSLDLSVKRLMKEWRVVMAEGLVLLNQGGGNCSLTNNTEHIRLAPCRGNLHEWHFSIAGPPGSVFEGGIYHGRVLLPADYPSSAPRLQMLNPSGRFEVGADICLSATAFHQETWQPVWTVRTLVSALRSHMTTKALEVGGIECSARRRRLLAQRSRRFQCRGCGVDHSGFPGKIFEDLPMLVAEVEVEEKVTASTSSSAVTGNGKEEGTARRRRIGKIEGRRGGDRVAMTEKGYDACFVSLFDRYKLPLVLGIAFLLAFLWLNVSS 313
L S L +L PS A N+GGK S LPRS LS +RL+KEWR +MAEGLVL++ G GNCSL+NNTEHIRLAPCRGNLHEWHFS+AGPPGSV+EGGIYHGRV+LPA+YP +APRLQMLNPSGRFEVGADICLSAT+FHQETWQPVWTVRTLVSALRSHM T A+EVGG+ECSARRR+ LA+RSR F CRGCGVDHS FPG++F LP V EV S V G G+ G R R G+ G DR A + A V++ R+K+ ++L + F + FL LN SS
Sbjct: 15 LLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPE-VGEV------------SRVPGRGETRG--RGNRGGRETGVGVADRAAFSGL---ARLVAVLRRHKVSVLLCLVFWMCFLVLNASS 295
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01230.1 ID=NO07G01230.1|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp CAGGCAGGAGAATGCCAAATCTCTAAGATTTCTACCTCTATCCTTAGTAC CTGCGCTGCGGGCGCCTGGTCAGAGTGCCTCTCTTTCCTCCCAGGATCAT GATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTCAT GTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTATCG ATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGACTT GTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGGCC TCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACACC GAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCATTT CTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCATG GCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTACAG ATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTATC GGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAGGA CGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGGTA GGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGATC AAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCCTG GGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGGAG GAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGAAA GGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAGAA GAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCTTC GTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCGTT CCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGATGAAGAA AAGAAAATACGATTGTCTCAGTCATGTCGTATCTCTTCCATTATCCTCTC CTCCTTCTGACTTGACCTCAGGGCAGAAACGGGGCGCTTGAATCCTCCCG TCCTCTAGTTGGCCGCCGTGACGACGCCGGTATCTCGACAAAGCAAAATT GAGGAATGTAACCGATATTCGCGAATCAAAGTAAATCAATCTCCATCGAT GCCAGCACTTATCGTACAGATTTGATTTAATGTGGACAGTTCGTCCAGAT TCTTTTTCTTCTTTTCAGTGTTTCTTGTGTGTTATTACCCTTCTCAAGGA AAACTCGCTGTATTGCTGCAGGCACCGTAGCCCTCGAATTTCTGGGGGGC GGACTGGCGTGGGTTTTCTCTATCTTTTTTATTTTTTGTTTTCTATTTTT AGTTATGGTCGTCGATTGCTCTTCTCTGTTGTTACCGTGGTACGTGCTAA CTTCTGCTCGCTGATTTTTGGGTGTTTCTAAATTGAATCTTATTGGTTTT TTTTTTGGGTTTTCATATCGACCTCTGATTCTGTTTTTGTTGTCCTATGG AACTACATCTGTTACTTGTGTATTTCTTCTCAGTGTATTGATAGGCATGA TCATCGTTCTTGTCGTCGTCTTCTTGCTTCGAGGGTTTCCCCCAGCACCC TCTGCTTCACGCGATGAGTGCCACGTGCATGCTCATTCGTCATATTTCCC GTTCCCAAACGAACGCCTCTTCCTACTTGTCCTGATACGTCATCCCCTCT TTGATCTCTTCCTTCACACTACTCGTACATCAGAAAGACAGGCTTCATCG TTCTCGCGCTGATGCTGCCGCTGACTATTGGTCTCTATCTACCAATGGCA TATAGAATCGAAAGCACGAATCAAGCGTAGAAATTTATCATATATGTAGA TGCCTTATTTATTCGTCACTCGATCGCTATGTAGATAGGTGGGTAATAGA TCTAAATCATAGATGGGCGGGCAATAGATTTTCGATATAAATAAATAAAT CATCTTTTACTCTCTCATTCTCTCTCCCTCTCTCTATCTCATTTCCTCTC TCTCATACACGTGTCTTCTTGTCCATGTACTCGTTCGATTAATCATGCGC TCGTTTGCACATGCAGCGCCAGCATCGTTGCCGTCACTCCTGGTTGGTTT CATACATCATTTCTACTTTCACTCTCCCAATCGATGTTTTTTCTCAGTTG TCATCAGACTGATGGACAGGCAGGGACATTAGATCACTCTTTTCCCTCGC TCGTACCTACCGATACACACAAGCGCGGACATTCACTCACTCGGACATT back to topprotein sequence of NO07G01230.1 >NO07G01230.1-protein ID=NO07G01230.1-protein|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp MIDLLPLRRPRLLRLFSCALPVLFLLLPSAATVSINRGGKSSSCLPRSLD LSVKRLMKEWRVVMAEGLVLLNQGGGNCSLTNNTEHIRLAPCRGNLHEWH FSIAGPPGSVFEGGIYHGRVLLPADYPSSAPRLQMLNPSGRFEVGADICL SATAFHQETWQPVWTVRTLVSALRSHMTTKALEVGGIECSARRRRLLAQR SRRFQCRGCGVDHSGFPGKIFEDLPMLVAEVEVEEKVTASTSSSAVTGNG KEEGTARRRRIGKIEGRRGGDRVAMTEKGYDACFVSLFDRYKLPLVLGIA FLLAFLWLNVSSGY* back to topmRNA from alignment at chr7:392739..395087- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01230.1 ID=NO07G01230.1|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp|location=Sequence derived from alignment at chr7:392739..395087- (Nannochloropsis oceanica) CAGGCAGGAGAATGCCAAATCTCTAAGATTTCTACCTCTATCCTTAGTAC
CTGCGCTGCGGGCGCCTGGTCAGAGTGCCTCTCTTTCCTCCCAGGATCAT
GATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTCAT
GTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTATCG
ATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGACTT
GTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGGCC
TCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACACC
GAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCATTT
CTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCATG
GCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTACAG
ATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTATC
GGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAGGA
CGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGGTA
GGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGATC
AAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCCTG
GGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGGAG
GAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGAAA
GGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAGAA
GAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCTTC
GTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCGTT
CCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGATGAAGAA
AAGAAAATACGATTGTCTCAGTCATGTCGTATCTCTTCCATTATCCTCTC
CTCCTTCTGACTTGACCTCAGGGCAGAAACGGGGCGCTTGAATCCTCCCG
TCCTCTAGTTGGCCGCCGTGACGACGCCGGTATCTCGACAAAGCAAAATT
GAGGAATGTAACCGATATTCGCGAATCAAAGTAAATCAATCTCCATCGAT
GCCAGCACTTATCGTACAGATTTGATTTAATGTGGACAGTTCGTCCAGAT
TCTTTTTCTTCTTTTCAGTGTTTCTTGTGTGTTATTACCCTTCTCAAGGA
AAACTCGCTGTATTGCTGCAGGCACCGTAGCCCTCGAATTTCTGGGGGGC
GGACTGGCGTGGGTTTTCTCTATCTTTTTTATTTTTTGTTTTCTATTTTT
AGTTATGGTCGTCGATTGCTCTTCTCTGTTGTTACCGTGGTACGTGCTAA
CTTCTGCTCGCTGATTTTTGGGTGTTTCTAAATTGAATCTTATTGGTTTT
TTTTTTGGGTTTTCATATCGACCTCTGATTCTGTTTTTGTTGTCCTATGG
AACTACATCTGTTACTTGTGTATTTCTTCTCAGTGTATTGATAGGCATGA
TCATCGTTCTTGTCGTCGTCTTCTTGCTTCGAGGGTTTCCCCCAGCACCC
TCTGCTTCACGCGATGAGTGCCACGTGCATGCTCATTCGTCATATTTCCC
GTTCCCAAACGAACGCCTCTTCCTACTTGTCCTGATACGTCATCCCCTCT
TTGATCTCTTCCTTCACACTACTCGTACATCAGAAAGACAGGCTTCATCG
TTCTCGCGCTGATGCTGCCGCTGACTATTGGTCTCTATCTACCAATGGCA
TATAGAATCGAAAGCACGAATCAAGCGTAGAAATTTATCATATATGTAGA
TGCCTTATTTATTCGTCACTCGATCGCTATGTAGATAGGTGGGTAATAGA
TCTAAATCATAGATGGGCGGGCAATAGATTTTCGATATAAATAAATAAAT
CATCTTTTACTCTCTCATTCTCTCTCCCTCTCTCTATCTCATTTCCTCTC
TCTCATACACGTGTCTTCTTGTCCATGTACTCGTTCGATTAATCATGCGC
TCGTTTGCACATGCAGCGCCAGCATCGTTGCCGTCACTCCTGGTTGGTTT
CATACATCATTTCTACTTTCACTCTCCCAATCGATGTTTTTTCTCAGTTG
TCATCAGACTGATGGACAGGCAGGGACATTAGATCACTCTTTTCCCTCGC
TCGTACCTACCGATACACACAAGCGCGGACATTCACTCACTCGGACATT back to topCoding sequence (CDS) from alignment at chr7:392739..395087- >NO07G01230.1 ID=NO07G01230.1|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr7:392739..395087- (Nannochloropsis oceanica) ATGATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTC ATGTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTAT CGATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGAC TTGTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGG CCTCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACA CCGAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCAT TTCTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCA TGGCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTAC AGATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTA TCGGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAG GACGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGG TAGGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGA TCAAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCC TGGGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGG AGGAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGA AAGGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAG AAGAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCT TCGTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCG TTCCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGA back to top
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