NO07G01230.1, NO07G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01230.1
Unique NameNO07G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2349
Alignment locationchr7:392739..395087 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:392739..395087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01230.1 vs.
Match: EWM27260.1 (ubiquitin-conjugating enzyme e2 j1 [Nannochloropsis gaditana])

HSP 1 Score: 347.4 bits (890), Expect = 4.500e-92
Identity = 187/299 (62.54%), Postives = 218/299 (72.91%), Query Frame = 0
Query:   15 LFSCALPVLFLLLPSAATVSINRGGKSSSC-LPRSLDLSVKRLMKEWRVVMAEGLVLLNQGGGNCSLTNNTEHIRLAPCRGNLHEWHFSIAGPPGSVFEGGIYHGRVLLPADYPSSAPRLQMLNPSGRFEVGADICLSATAFHQETWQPVWTVRTLVSALRSHMTTKALEVGGIECSARRRRLLAQRSRRFQCRGCGVDHSGFPGKIFEDLPMLVAEVEVEEKVTASTSSSAVTGNGKEEGTARRRRIGKIEGRRGGDRVAMTEKGYDACFVSLFDRYKLPLVLGIAFLLAFLWLNVSS 313
            L S  L +L    PS A    N+GGK S   LPRS  LS +RL+KEWR +MAEGLVL++ G GNCSL+NNTEHIRLAPCRGNLHEWHFS+AGPPGSV+EGGIYHGRV+LPA+YP +APRLQMLNPSGRFEVGADICLSAT+FHQETWQPVWTVRTLVSALRSHM T A+EVGG+ECSARRR+ LA+RSR F CRGCGVDHS FPG++F  LP  V EV            S V G G+  G  R  R G+  G    DR A +     A  V++  R+K+ ++L + F + FL LN SS
Sbjct:   15 LLSLLLLLLLFHRPSYALHIPNKGGKKSPPGLPRSFALSYRRLIKEWRGIMAEGLVLMDSGEGNCSLSNNTEHIRLAPCRGNLHEWHFSVAGPPGSVYEGGIYHGRVILPANYPQTAPRLQMLNPSGRFEVGADICLSATSFHQETWQPVWTVRTLVSALRSHMATPAVEVGGMECSARRRKFLARRSRGFLCRGCGVDHSNFPGRVFRSLPE-VGEV------------SRVPGRGETRG--RGNRGGRETGVGVADRAAFSGL---ARLVAVLRRHKVSVLLCLVFWMCFLVLNASS 295          
The following BLAST results are available for this feature:
BLAST of NO07G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27260.14.500e-9262.54ubiquitin-conjugating enzyme e2 j1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01230NO07G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01230.1NO07G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01230.1.cds1NO07G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01230.1 ID=NO07G01230.1|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp
CAGGCAGGAGAATGCCAAATCTCTAAGATTTCTACCTCTATCCTTAGTAC
CTGCGCTGCGGGCGCCTGGTCAGAGTGCCTCTCTTTCCTCCCAGGATCAT
GATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTCAT
GTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTATCG
ATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGACTT
GTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGGCC
TCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACACC
GAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCATTT
CTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCATG
GCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTACAG
ATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTATC
GGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAGGA
CGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGGTA
GGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGATC
AAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCCTG
GGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGGAG
GAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGAAA
GGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAGAA
GAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCTTC
GTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCGTT
CCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGATGAAGAA
AAGAAAATACGATTGTCTCAGTCATGTCGTATCTCTTCCATTATCCTCTC
CTCCTTCTGACTTGACCTCAGGGCAGAAACGGGGCGCTTGAATCCTCCCG
TCCTCTAGTTGGCCGCCGTGACGACGCCGGTATCTCGACAAAGCAAAATT
GAGGAATGTAACCGATATTCGCGAATCAAAGTAAATCAATCTCCATCGAT
GCCAGCACTTATCGTACAGATTTGATTTAATGTGGACAGTTCGTCCAGAT
TCTTTTTCTTCTTTTCAGTGTTTCTTGTGTGTTATTACCCTTCTCAAGGA
AAACTCGCTGTATTGCTGCAGGCACCGTAGCCCTCGAATTTCTGGGGGGC
GGACTGGCGTGGGTTTTCTCTATCTTTTTTATTTTTTGTTTTCTATTTTT
AGTTATGGTCGTCGATTGCTCTTCTCTGTTGTTACCGTGGTACGTGCTAA
CTTCTGCTCGCTGATTTTTGGGTGTTTCTAAATTGAATCTTATTGGTTTT
TTTTTTGGGTTTTCATATCGACCTCTGATTCTGTTTTTGTTGTCCTATGG
AACTACATCTGTTACTTGTGTATTTCTTCTCAGTGTATTGATAGGCATGA
TCATCGTTCTTGTCGTCGTCTTCTTGCTTCGAGGGTTTCCCCCAGCACCC
TCTGCTTCACGCGATGAGTGCCACGTGCATGCTCATTCGTCATATTTCCC
GTTCCCAAACGAACGCCTCTTCCTACTTGTCCTGATACGTCATCCCCTCT
TTGATCTCTTCCTTCACACTACTCGTACATCAGAAAGACAGGCTTCATCG
TTCTCGCGCTGATGCTGCCGCTGACTATTGGTCTCTATCTACCAATGGCA
TATAGAATCGAAAGCACGAATCAAGCGTAGAAATTTATCATATATGTAGA
TGCCTTATTTATTCGTCACTCGATCGCTATGTAGATAGGTGGGTAATAGA
TCTAAATCATAGATGGGCGGGCAATAGATTTTCGATATAAATAAATAAAT
CATCTTTTACTCTCTCATTCTCTCTCCCTCTCTCTATCTCATTTCCTCTC
TCTCATACACGTGTCTTCTTGTCCATGTACTCGTTCGATTAATCATGCGC
TCGTTTGCACATGCAGCGCCAGCATCGTTGCCGTCACTCCTGGTTGGTTT
CATACATCATTTCTACTTTCACTCTCCCAATCGATGTTTTTTCTCAGTTG
TCATCAGACTGATGGACAGGCAGGGACATTAGATCACTCTTTTCCCTCGC
TCGTACCTACCGATACACACAAGCGCGGACATTCACTCACTCGGACATT
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protein sequence of NO07G01230.1

>NO07G01230.1-protein ID=NO07G01230.1-protein|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MIDLLPLRRPRLLRLFSCALPVLFLLLPSAATVSINRGGKSSSCLPRSLD
LSVKRLMKEWRVVMAEGLVLLNQGGGNCSLTNNTEHIRLAPCRGNLHEWH
FSIAGPPGSVFEGGIYHGRVLLPADYPSSAPRLQMLNPSGRFEVGADICL
SATAFHQETWQPVWTVRTLVSALRSHMTTKALEVGGIECSARRRRLLAQR
SRRFQCRGCGVDHSGFPGKIFEDLPMLVAEVEVEEKVTASTSSSAVTGNG
KEEGTARRRRIGKIEGRRGGDRVAMTEKGYDACFVSLFDRYKLPLVLGIA
FLLAFLWLNVSSGY*
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mRNA from alignment at chr7:392739..395087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01230.1 ID=NO07G01230.1|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp|location=Sequence derived from alignment at chr7:392739..395087- (Nannochloropsis oceanica)
CAGGCAGGAGAATGCCAAATCTCTAAGATTTCTACCTCTATCCTTAGTAC CTGCGCTGCGGGCGCCTGGTCAGAGTGCCTCTCTTTCCTCCCAGGATCAT GATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTCAT GTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTATCG ATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGACTT GTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGGCC TCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACACC GAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCATTT CTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCATG GCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTACAG ATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTATC GGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAGGA CGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGGTA GGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGATC AAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCCTG GGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGGAG GAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGAAA GGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAGAA GAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCTTC GTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCGTT CCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGATGAAGAA AAGAAAATACGATTGTCTCAGTCATGTCGTATCTCTTCCATTATCCTCTC CTCCTTCTGACTTGACCTCAGGGCAGAAACGGGGCGCTTGAATCCTCCCG TCCTCTAGTTGGCCGCCGTGACGACGCCGGTATCTCGACAAAGCAAAATT GAGGAATGTAACCGATATTCGCGAATCAAAGTAAATCAATCTCCATCGAT GCCAGCACTTATCGTACAGATTTGATTTAATGTGGACAGTTCGTCCAGAT TCTTTTTCTTCTTTTCAGTGTTTCTTGTGTGTTATTACCCTTCTCAAGGA AAACTCGCTGTATTGCTGCAGGCACCGTAGCCCTCGAATTTCTGGGGGGC GGACTGGCGTGGGTTTTCTCTATCTTTTTTATTTTTTGTTTTCTATTTTT AGTTATGGTCGTCGATTGCTCTTCTCTGTTGTTACCGTGGTACGTGCTAA CTTCTGCTCGCTGATTTTTGGGTGTTTCTAAATTGAATCTTATTGGTTTT TTTTTTGGGTTTTCATATCGACCTCTGATTCTGTTTTTGTTGTCCTATGG AACTACATCTGTTACTTGTGTATTTCTTCTCAGTGTATTGATAGGCATGA TCATCGTTCTTGTCGTCGTCTTCTTGCTTCGAGGGTTTCCCCCAGCACCC TCTGCTTCACGCGATGAGTGCCACGTGCATGCTCATTCGTCATATTTCCC GTTCCCAAACGAACGCCTCTTCCTACTTGTCCTGATACGTCATCCCCTCT TTGATCTCTTCCTTCACACTACTCGTACATCAGAAAGACAGGCTTCATCG TTCTCGCGCTGATGCTGCCGCTGACTATTGGTCTCTATCTACCAATGGCA TATAGAATCGAAAGCACGAATCAAGCGTAGAAATTTATCATATATGTAGA TGCCTTATTTATTCGTCACTCGATCGCTATGTAGATAGGTGGGTAATAGA TCTAAATCATAGATGGGCGGGCAATAGATTTTCGATATAAATAAATAAAT CATCTTTTACTCTCTCATTCTCTCTCCCTCTCTCTATCTCATTTCCTCTC TCTCATACACGTGTCTTCTTGTCCATGTACTCGTTCGATTAATCATGCGC TCGTTTGCACATGCAGCGCCAGCATCGTTGCCGTCACTCCTGGTTGGTTT CATACATCATTTCTACTTTCACTCTCCCAATCGATGTTTTTTCTCAGTTG TCATCAGACTGATGGACAGGCAGGGACATTAGATCACTCTTTTCCCTCGC TCGTACCTACCGATACACACAAGCGCGGACATTCACTCACTCGGACATT
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Coding sequence (CDS) from alignment at chr7:392739..395087-

>NO07G01230.1 ID=NO07G01230.1|Name=NO07G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr7:392739..395087- (Nannochloropsis oceanica)
ATGATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTC
ATGTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTAT
CGATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGAC
TTGTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGG
CCTCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACA
CCGAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCAT
TTCTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCA
TGGCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTAC
AGATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTA
TCGGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAG
GACGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGG
TAGGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGA
TCAAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCC
TGGGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGG
AGGAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGA
AAGGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAG
AAGAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCT
TCGTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCG
TTCCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGA
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Synonyms
Publications