NO07G01140.1, NO07G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01140.1
Unique NameNO07G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr7:373434..374825 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:373434..374825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01140.1 vs.
Match: EWM27259.1 (Brix domain protein [Nannochloropsis gaditana])

HSP 1 Score: 619.4 bits (1596), Expect = 7.900e-174
Identity = 322/374 (86.10%), Postives = 349/374 (93.32%), Query Frame = 0 
Query:    1 MGKRRKRRTHVPLSNPQQQASIPEEERVPKSLVLRKGRTTPEVGSLVAELRRLMGPETASRLKERRTNRMKDFAAVAGHLGLTHILSFSQSPAALKLRIARFPRGPTLTFKVERYCLQHHVRATQKRPYESLSAYQTAPLVVLNNFGDASSPPYVKLMKITFQNMFPPLNVNTVKLTDCRRIVLFDYDAATGLVEQRHFAIRAAPSELHKSIKKLVQTKIPSLGSMTDISEFVLGPALQAYGGAGAASDSEVDDETSHVILPERFRGRGNLKSQKSAIRLAELGPRLTMKLMKVERGFLEGDVIYHDYIKKAPEEVRALEAKAKAGRELKKRRREEQEANVARKEQKLQEAKERREARMTERAARREAEGGGEG 375
            MGKRRKRRTHVP+ NP+QQ S+ EEER+PK++VLRKGRTTPE G+LV ELRRLMGPETA+RLKERRTNRMKDFAAVAGHLGLTHILS SQ+PA+L L IARFPRGPTLTFKVERYCLQHHVRATQKRPYESLSAYQTAPLVVLNNFGD SSPPYVKLMKITFQNMFPPLNVNTV+LTDCRRIVL+DY+A TG+VEQRHFAIRAAPSELHKS+K+LVQTKIP LG MTDISEF+LGPALQAYGGAGAASDSEV+DE SHVILP+RFRGRGNLKSQKSAIRLAELGPRL ++LMKV+RGF+EGDVIYHDYIKK PEEVRALEAKAKA RELKKRRREEQE NVARKE KL+EA+ER+  R   RAA+REAE  GEG
Sbjct:    1 MGKRRKRRTHVPV-NPEQQQSLTEEERIPKTMVLRKGRTTPEAGALVTELRRLMGPETAARLKERRTNRMKDFAAVAGHLGLTHILSLSQTPASLSLHIARFPRGPTLTFKVERYCLQHHVRATQKRPYESLSAYQTAPLVVLNNFGDVSSPPYVKLMKITFQNMFPPLNVNTVRLTDCRRIVLYDYEADTGVVEQRHFAIRAAPSELHKSVKRLVQTKIPRLGKMTDISEFILGPALQAYGGAGAASDSEVEDEASHVILPDRFRGRGNLKSQKSAIRLAELGPRLRLRLMKVQRGFMEGDVIYHDYIKKTPEEVRALEAKAKAERELKKRRREEQEGNVARKELKLKEAQERKIERQAARAAKREAEDRGEG 373
The following BLAST results are available for this feature:
BLAST of NO07G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27259.17.900e-17486.10Brix domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01140NO07G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01140.1NO07G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01140.1.cds1NO07G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01140.1.cds2NO07G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01140.1 ID=NO07G01140.1|Name=NO07G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ATGGGCAAGCGACGCAAGCGCCGGACACACGTCCCCCTTTCCAACCCGCA
GCAGCAAGCAAGCATCCCAGAAGAGGAGCGGGTGCCCAAGAGCCTGGTCC
TGAGAAAGGGGCGGACCACCCCCGAGGTGGGGAGTTTGGTAGCGGAACTG
CGGCGGCTTATGGGGCCGGAGACGGCCTCTCGCCTTAAGGAACGGCGCAC
CAATCGCATGAAGGACTTTGCTGCCGTGGCGGGCCACTTAGGACTGACGC
ACATCTTATCATTTTCGCAGAGCCCCGCGGCGCTGAAATTAAGGATTGCC
CGGTTCCCGCGTGGCCCTACTCTGACTTTCAAGGTGGAGCGGTATTGCTT
GCAGCATCACGTGCGGGCGACACAAAAGCGACCGTATGAGAGCTTGAGTG
CCTATCAAACTGCACCATTGGTGGTCCTGAATAATTTTGGGGATGCCAGC
AGTCCACCCTATGTCAAGCTGATGAAGATCACATTTCAGAACATGTTCCC
CCCTCTGAATGTGAACACGGTGAAGCTCACTGACTGTCGGCGGATTGTTT
TATTCGATTACGACGCTGCGACGGGGCTGGTGGAACAGAGGCATTTTGCT
ATCCGGGCGGCTCCCTCCGAGTTGCACAAGAGTATCAAGAAATTGGTCCA
GACGAAGATTCCCAGCTTGGGGAGCATGACAGACATAAGTGAATTCGTGC
TTGGCCCGGCCCTCCAAGCCTACGGCGGCGCCGGCGCCGCCTCCGACAGC
GAGGTGGATGACGAGACCTCTCATGTCATACTCCCCGAGCGATTTCGAGG
GCGGGGTAATTTAAAAAGTCAAAAATCGGCGATTCGACTGGCGGAACTGG
GTCCGAGGTTGACTATGAAGCTGATGAAGGTCGAGAGAGGGTTCTTGGAG
GGGGATGTGATATACCACGATTACATCAAGAAGGCTCCCGAAGAGGTGCG
GGCGTTGGAAGCGAAGGCCAAGGCGGGGAGGGAGTTGAAGAAACGGAGGA
GGGAAGAGCAGGAGGCGAACGTAGCGAGGAAAGAACAGAAATTGCAGGAG
GCCAAGGAAAGGAGGGAGGCACGGATGACGGAACGGGCTGCGAGGAGGGA
GGCGGAGGGGGGAGGGGAAGGAGGGGAGGGGGAAGAGGAGCAGAGTGAAC
AGGAAGGAGAGGAGGAGAGCGAAGGCGGAGAAATGATGAGCGAAGATGAA
GAGGCGTGA
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protein sequence of NO07G01140.1

>NO07G01140.1-protein ID=NO07G01140.1-protein|Name=NO07G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MGKRRKRRTHVPLSNPQQQASIPEEERVPKSLVLRKGRTTPEVGSLVAEL
RRLMGPETASRLKERRTNRMKDFAAVAGHLGLTHILSFSQSPAALKLRIA
RFPRGPTLTFKVERYCLQHHVRATQKRPYESLSAYQTAPLVVLNNFGDAS
SPPYVKLMKITFQNMFPPLNVNTVKLTDCRRIVLFDYDAATGLVEQRHFA
IRAAPSELHKSIKKLVQTKIPSLGSMTDISEFVLGPALQAYGGAGAASDS
EVDDETSHVILPERFRGRGNLKSQKSAIRLAELGPRLTMKLMKVERGFLE
GDVIYHDYIKKAPEEVRALEAKAKAGRELKKRRREEQEANVARKEQKLQE
AKERREARMTERAARREAEGGGEGGEGEEEQSEQEGEEESEGGEMMSEDE
EA*
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mRNA from alignment at chr7:373434..374825+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01140.1 ID=NO07G01140.1|Name=NO07G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp|location=Sequence derived from alignment at chr7:373434..374825+ (Nannochloropsis oceanica)
ATGGGCAAGCGACGCAAGCGCCGGACACACGTCCCCCTTTCCAACCCGCA
GCAGCAAGCAAGCATCCCAGAAGAGGAGCGGGTGCCCAAGAGCCTGGTCC
TGAGAAAGGGGCGGACCACCCCCGAGGTGGGGAGTTTGGTAGCGGAACTG
CGGCGGCTTATGGGGCCGGAGACGGCCTCTCGCCTTAAGGAACGGCGCAC
CAATCGCATGAAGGACTTTGCTGCCGTGGCGGGCCACTTAGGACTGACGC
ACATCTTATCATTTTCGCAGAGCCCCGCGGCGCTGAAATTAAGGATTGCC
CGGTTCCCGCGTGGCCCTACTCTGACTTTCAAGGTGGAGCGGTATTGCTT
GCAGCATCACGTGCGGGCGACACAAAAGCGACCGTATGAGAGCTTGAGTG
CCTATCAAACTGCACCATTGGTGGTCCTGAATAATTTTGGGGATGCCAGC
AGTCCACCCTATGTCAAGCTGATGAAGATCACATTTCAGAACATGTTCCC
CCCTCTGAATGTGAACACGGTGAAGCTCACTGACTGTCGGCGGATTGTTT
TATTCGATTACGACGCTGCGACGGGGCTGGTGGAACAGAGGCATTTTGCT
ATCCGGGCGGCTCCCTCCGAGTTGCACAAGAGTATCAAGAAATTGGTCCA
GACGAAGATTCCCAGCTTGGGGAGCATGACAGACATAAGGTACGTGGCCG
CCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCCCTTCCTCCCTT
CCTTTTGGCATACACACTTTCGATACTGTCATGCAGTCCTCCTTTTTATA
ATATCGCCACACTTACATCCCTCTCTTGCGAACGACTTCGTCTCTACCTC
CCTCCCTCCCTCCCTCTGTTAGTGAATTCGTGCTTGGCCCGGCCCTCCAA
GCCTACGGCGGCGCCGGCGCCGCCTCCGACAGCGAGGTGGATGACGAGAC
CTCTCATGTCATACTCCCCGAGCGATTTCGAGGGCGGGGTAATTTAAAAA
GTCAAAAATCGGCGATTCGACTGGCGGAACTGGGTCCGAGGTTGACTATG
AAGCTGATGAAGGTCGAGAGAGGGTTCTTGGAGGGGGATGTGATATACCA
CGATTACATCAAGAAGGCTCCCGAAGAGGTGCGGGCGTTGGAAGCGAAGG
CCAAGGCGGGGAGGGAGTTGAAGAAACGGAGGAGGGAAGAGCAGGAGGCG
AACGTAGCGAGGAAAGAACAGAAATTGCAGGAGGCCAAGGAAAGGAGGGA
GGCACGGATGACGGAACGGGCTGCGAGGAGGGAGGCGGAGGGGGGAGGGG
AAGGAGGGGAGGGGGAAGAGGAGCAGAGTGAACAGGAAGGAGAGGAGGAG
AGCGAAGGCGGAGAAATGATGAGCGAAGATGAAGAGGCGTGA
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Coding sequence (CDS) from alignment at chr7:373434..374825+

>NO07G01140.1 ID=NO07G01140.1|Name=NO07G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr7:373434..374825+ (Nannochloropsis oceanica)
ATGGGCAAGCGACGCAAGCGCCGGACACACGTCCCCCTTTCCAACCCGCA
GCAGCAAGCAAGCATCCCAGAAGAGGAGCGGGTGCCCAAGAGCCTGGTCC
TGAGAAAGGGGCGGACCACCCCCGAGGTGGGGAGTTTGGTAGCGGAACTG
CGGCGGCTTATGGGGCCGGAGACGGCCTCTCGCCTTAAGGAACGGCGCAC
CAATCGCATGAAGGACTTTGCTGCCGTGGCGGGCCACTTAGGACTGACGC
ACATCTTATCATTTTCGCAGAGCCCCGCGGCGCTGAAATTAAGGATTGCC
CGGTTCCCGCGTGGCCCTACTCTGACTTTCAAGGTGGAGCGGTATTGCTT
GCAGCATCACGTGCGGGCGACACAAAAGCGACCGTATGAGAGCTTGAGTG
CCTATCAAACTGCACCATTGGTGGTCCTGAATAATTTTGGGGATGCCAGC
AGTCCACCCTATGTCAAGCTGATGAAGATCACATTTCAGAACATGTTCCC
CCCTCTGAATGTGAACACGGTGAAGCTCACTGACTGTCGGCGGATTGTTT
TATTCGATTACGACGCTGCGACGGGGCTGGTGGAACAGAGGCATTTTGCT
ATCCGGGCGGCTCCCTCCGAGTTGCACAAGAGTATCAAGAAATTGGTCCA
GACGAAGATTCCCAGCTTGGGGAGCATGACAGACATAAGTGAATTCGTGC
TTGGCCCGGCCCTCCAAGCCTACGGCGGCGCCGGCGCCGCCTCCGACAGC
GAGGTGGATGACGAGACCTCTCATGTCATACTCCCCGAGCGATTTCGAGG
GCGGGGTAATTTAAAAAGTCAAAAATCGGCGATTCGACTGGCGGAACTGG
GTCCGAGGTTGACTATGAAGCTGATGAAGGTCGAGAGAGGGTTCTTGGAG
GGGGATGTGATATACCACGATTACATCAAGAAGGCTCCCGAAGAGGTGCG
GGCGTTGGAAGCGAAGGCCAAGGCGGGGAGGGAGTTGAAGAAACGGAGGA
GGGAAGAGCAGGAGGCGAACGTAGCGAGGAAAGAACAGAAATTGCAGGAG
GCCAAGGAAAGGAGGGAGGCACGGATGACGGAACGGGCTGCGAGGAGGGA
GGCGGAGGGGGGAGGGGAAGGAGGGGAGGGGGAAGAGGAGCAGAGTGAAC
AGGAAGGAGAGGAGGAGAGCGAAGGCGGAGAAATGATGAGCGAAGATGAA
GAGGCGTGA
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Synonyms
Publications