NO07G01120.1, NO07G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01120.1
Unique NameNO07G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr7:370082..371521 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:370082..371521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01120.1 vs.
Match: EWM27277.1 (histidine triad protein member [Nannochloropsis gaditana])

HSP 1 Score: 541.6 bits (1394), Expect = 2.000e-150
Identity = 268/396 (67.68%), Postives = 321/396 (81.06%), Query Frame = 0 
Query:    1 MPPAASHLGLLILASVLLSVKAMSWKRRRIGGKWAATNLKHLKDFVVEEVLSSNEVTPSPDGFTVFLGHFTWQGPEEKALIKLRPQQLPATDKIDTTAAT-TAAAATKTP-------RSLRCLLRYIGLRVDLESGAEYGYYHGSISPLKLTLLRVPLAYHIEVIAPASPRQIIRARVEERILVRETPELYQQVLGPLAEEIRKDGRSIQWVYNILDHKKEVDRIVFEEPPLPPSSPPSSSPSGGFLLVPDPKWKSHPNPSDTPKEEWRHHSCTAGLACLAIVHDRDIGSLRDLRRKHVPLLKNMLEKGLKAIEKVYGVGPEEIRVFVHYVPQFFHFHVHFSRLSLAHGIEVERAHLLSDIIDKIENAPPGQEYYEKACISYTVKKSEEIFKRLQR 389
            MP AAS L   +++S+LLSV A+SWKRRRIG KW+ATNL HL+DF++EEVL+ +EVTPSPDG+TV LG FTWQG +EKA++K+RP+QLPA D   T   + T     K         +SL   L ++ LRV LESGAEYGYY GS+SPL +  L +PL YHIEVIAPASPRQI+RA VE+R+L+RE+P LY+  LGPLA+E+R +GRS+QWVYNIL+HKKE +RIVFE+PP P  S      S GF+LVPDPKWKSHP+PS TPKEEWRHH  T+GLACLAIVHDR IGSLRDLRR+H+PLL+++L KGL AIE VYGVG EE+RVFVHYVPQFFHFHVHFSRL+LAHGIEVERAHLLSD+I+KIE AP G+EYYE A ISYTVKKSEE++ RLQ+
Sbjct:    1 MPIAASQLSFFLVSSILLSVAALSWKRRRIGSKWSATNLIHLRDFIMEEVLT-DEVTPSPDGYTVLLGRFTWQGRDEKAILKMRPEQLPARDNAVTREHSHTGKGILKNGFWVSCKRQSLHRALSHLSLRVQLESGAEYGYYSGSLSPLSMAYLGIPLTYHIEVIAPASPRQIVRAHVEKRVLIRESPALYRVALGPLADEVRGEGRSLQWVYNILEHKKEAERIVFEDPPDPLDS------SKGFVLVPDPKWKSHPDPSRTPKEEWRHHPSTSGLACLAIVHDRSIGSLRDLRRRHLPLLQSLLAKGLAAIEAVYGVGKEEVRVFVHYVPQFFHFHVHFSRLNLAHGIEVERAHLLSDVIEKIERAPVGEEYYENASISYTVKKSEELYGRLQK 389
The following BLAST results are available for this feature:
BLAST of NO07G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27277.12.000e-15067.68histidine triad protein member [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01120NO07G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01120.1NO07G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01120.1.cds1NO07G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01120.1.cds2NO07G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01120.1.cds3NO07G01120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01120.1 ID=NO07G01120.1|Name=NO07G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
ATGCCGCCCGCCGCCTCGCACCTGGGCCTCTTGATCCTGGCCAGTGTCTT
ACTGAGTGTCAAGGCAATGTCCTGGAAGAGGAGACGCATAGGAGGCAAGT
GGGCAGCCACCAACCTCAAGCACCTCAAAGACTTTGTGGTGGAAGAAGTG
CTGAGCAGCAACGAAGTGACACCCTCTCCCGATGGGTTCACGGTTTTCTT
AGGCCATTTCACCTGGCAAGGGCCCGAGGAAAAAGCGCTCATAAAATTGC
GTCCGCAGCAGCTTCCCGCCACCGACAAGATTGACACTACAGCAGCAACA
ACAGCAGCAGCAGCAACCAAAACACCAAGAAGTTTACGTTGTCTGTTGAG
GTATATAGGCCTTCGAGTCGACCTCGAAAGCGGGGCGGAATACGGCTATT
ATCACGGCAGCATATCTCCTCTCAAACTCACCCTCCTCCGCGTCCCCCTT
GCCTATCACATTGAAGTCATCGCTCCAGCCAGCCCTCGTCAAATCATCCG
CGCCCGCGTCGAAGAGCGCATACTTGTTCGAGAAACGCCTGAATTGTACC
AACAAGTCCTTGGTCCGCTGGCAGAAGAGATAAGAAAAGATGGCCGTTCT
ATCCAATGGGTCTACAACATCCTCGACCACAAAAAGGAAGTGGACCGCAT
CGTCTTTGAAGAGCCTCCCCTCCCCCCTTCTTCCCCCCCTTCCTCCTCCC
CTTCAGGTGGATTTCTTCTAGTACCTGACCCTAAATGGAAATCACACCCT
AACCCCTCTGACACTCCCAAAGAGGAATGGAGGCACCACTCTTGCACTGC
CGGTCTGGCGTGCCTCGCTATAGTCCACGACAGAGACATTGGTTCCTTGC
GAGATCTGAGACGTAAGCATGTGCCGCTGTTGAAAAACATGTTGGAGAAG
GGTTTGAAGGCCATTGAGAAGGTGTATGGGGTTGGGCCGGAGGAGATACG
AGTGTTCGTGCATTATGTGCCACAGTTTTTCCACTTCCACGTACACTTCT
CCCGCCTCAGCCTCGCTCACGGCATTGAGGTTGAACGGGCGCATCTCCTC
TCTGATATAATCGACAAGATTGAGAACGCCCCACCAGGACAAGAATATTA
CGAAAAAGCCTGTATTTCTTACACTGTTAAGAAGAGTGAGGAAATCTTTA
AGCGATTGCAACGAGGGCCAGGCAAATGA
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protein sequence of NO07G01120.1

>NO07G01120.1-protein ID=NO07G01120.1-protein|Name=NO07G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MPPAASHLGLLILASVLLSVKAMSWKRRRIGGKWAATNLKHLKDFVVEEV
LSSNEVTPSPDGFTVFLGHFTWQGPEEKALIKLRPQQLPATDKIDTTAAT
TAAAATKTPRSLRCLLRYIGLRVDLESGAEYGYYHGSISPLKLTLLRVPL
AYHIEVIAPASPRQIIRARVEERILVRETPELYQQVLGPLAEEIRKDGRS
IQWVYNILDHKKEVDRIVFEEPPLPPSSPPSSSPSGGFLLVPDPKWKSHP
NPSDTPKEEWRHHSCTAGLACLAIVHDRDIGSLRDLRRKHVPLLKNMLEK
GLKAIEKVYGVGPEEIRVFVHYVPQFFHFHVHFSRLSLAHGIEVERAHLL
SDIIDKIENAPPGQEYYEKACISYTVKKSEEIFKRLQRGPGK*
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mRNA from alignment at chr7:370082..371521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01120.1 ID=NO07G01120.1|Name=NO07G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at chr7:370082..371521+ (Nannochloropsis oceanica)
ATGCCGCCCGCCGCCTCGCACCTGGGCCTCTTGATCCTGGCCAGTGTCTT
ACTGAGTGTCAAGGCAATGTCCTGGAAGAGGAGACGCATGTACGTTCATC
CTGCGCCCATTCGTCATTCCGTCTCATCCATCCCACCTGTCTCATCCTCC
CCTCTCCCTTTTTCCTACGCACATATTGTCAGAGGAGGCAAGTGGGCAGC
CACCAACCTCAAGCACCTCAAAGACTTTGTGGTGGAAGAAGTGCTGAGCA
GCAACGAAGTGACACCCTCTCCCGATGGGTTCACGGTTTTCTTAGGCCAT
TTCACCTGGCAAGGGCCCGAGGAAAAAGCGCTCATAAAATTGCGTCCGCA
GCAGCTTCCCGCCACCGACAAGATTGACACTACAGCAGCAACAACAGCAG
CAGCAGCAACCAAAACACCAAGAAGTTTACGTTGTCTGTTGAGGTATATA
GGCCTTCGAGTCGACCTCGAAAGCGGGGCGGAATACGGCTATTATCACGG
CAGCATATCTCCTCTCAAACTCACCCTCCTCCGCGTCCCCCTTGCCTATC
ACATTGAAGTCATCGCTCCAGCCAGCCCTCGTCAAATCATCCGCGCCCGC
GTCGAAGAGCGCATACTTGTTCGAGAAACGCCTGAATTGTACCAACAAGT
CCTTGGTCCGCTGGCAGAAGAGATAAGAAAAGATGGCCGTTCTATCCAAT
GGGTCTACAACATCCTCGACCACAAAAAGGAAGTGGACCGCATCGTCTTT
GAAGAGCCTCCCCTCCCCCCTTCTTCCCCCCCTTCCTCCTCCCCTTCAGG
TGGATTTCTTCTAGTACCTGACCCTAAATGGAAATCACACCCTAACCCCT
CTGACACTCCCAAAGAGGAATGGAGGCACCACTCTTGCACTGCCGGTCTG
GCGTGCCTCGCTATAGTCCACGACAGAGACATTGGTTCCTTGCGAGATCT
GAGACGTAAGCATGTGCCGCTGTTGAAAAACATGTTGGAGAAGGGTTTGA
AGGCCATTGAGAAGGTGTATGGGGTTGGGCCGGAGGAGATACGAGTGTTC
GTGCATTATGTGCCACAGTTTTTCCACTTCCACGGTAAGGAGGGGAAATG
AGGGGGGAGGGAGGGGGGGAGGGAGGGCGAGAGCAGAGGTAGAAGAGCAA
GGGAAAAGGGTTGAGCCGATTATGTATTATATGCTTACATTCTACTTTTT
GATCCGATTCGATTTCGAGTTTCCACTCTAAACTTCCCACTGCCATGCAC
AGTACACTTCTCCCGCCTCAGCCTCGCTCACGGCATTGAGGTTGAACGGG
CGCATCTCCTCTCTGATATAATCGACAAGATTGAGAACGCCCCACCAGGA
CAAGAATATTACGAAAAAGCCTGTATTTCTTACACTGTTAAGAAGAGTGA
GGAAATCTTTAAGCGATTGCAACGAGGGCCAGGCAAATGA
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Coding sequence (CDS) from alignment at chr7:370082..371521+

>NO07G01120.1 ID=NO07G01120.1|Name=NO07G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr7:370082..371521+ (Nannochloropsis oceanica)
ATGCCGCCCGCCGCCTCGCACCTGGGCCTCTTGATCCTGGCCAGTGTCTT
ACTGAGTGTCAAGGCAATGTCCTGGAAGAGGAGACGCATAGGAGGCAAGT
GGGCAGCCACCAACCTCAAGCACCTCAAAGACTTTGTGGTGGAAGAAGTG
CTGAGCAGCAACGAAGTGACACCCTCTCCCGATGGGTTCACGGTTTTCTT
AGGCCATTTCACCTGGCAAGGGCCCGAGGAAAAAGCGCTCATAAAATTGC
GTCCGCAGCAGCTTCCCGCCACCGACAAGATTGACACTACAGCAGCAACA
ACAGCAGCAGCAGCAACCAAAACACCAAGAAGTTTACGTTGTCTGTTGAG
GTATATAGGCCTTCGAGTCGACCTCGAAAGCGGGGCGGAATACGGCTATT
ATCACGGCAGCATATCTCCTCTCAAACTCACCCTCCTCCGCGTCCCCCTT
GCCTATCACATTGAAGTCATCGCTCCAGCCAGCCCTCGTCAAATCATCCG
CGCCCGCGTCGAAGAGCGCATACTTGTTCGAGAAACGCCTGAATTGTACC
AACAAGTCCTTGGTCCGCTGGCAGAAGAGATAAGAAAAGATGGCCGTTCT
ATCCAATGGGTCTACAACATCCTCGACCACAAAAAGGAAGTGGACCGCAT
CGTCTTTGAAGAGCCTCCCCTCCCCCCTTCTTCCCCCCCTTCCTCCTCCC
CTTCAGGTGGATTTCTTCTAGTACCTGACCCTAAATGGAAATCACACCCT
AACCCCTCTGACACTCCCAAAGAGGAATGGAGGCACCACTCTTGCACTGC
CGGTCTGGCGTGCCTCGCTATAGTCCACGACAGAGACATTGGTTCCTTGC
GAGATCTGAGACGTAAGCATGTGCCGCTGTTGAAAAACATGTTGGAGAAG
GGTTTGAAGGCCATTGAGAAGGTGTATGGGGTTGGGCCGGAGGAGATACG
AGTGTTCGTGCATTATGTGCCACAGTTTTTCCACTTCCACGTACACTTCT
CCCGCCTCAGCCTCGCTCACGGCATTGAGGTTGAACGGGCGCATCTCCTC
TCTGATATAATCGACAAGATTGAGAACGCCCCACCAGGACAAGAATATTA
CGAAAAAGCCTGTATTTCTTACACTGTTAAGAAGAGTGAGGAAATCTTTA
AGCGATTGCAACGAGGGCCAGGCAAATGA
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Synonyms
Publications