NO07G01080.1, NO07G01080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01080.1
Unique NameNO07G01080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr7:353706..354919 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:353706..354919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G01080.1 vs.
Match: EWM27251.1 (haloacid dehalogenase superfamily protein [Nannochloropsis gaditana])

HSP 1 Score: 392.1 bits (1006), Expect = 1.600e-105
Identity = 200/301 (66.45%), Postives = 233/301 (77.41%), Query Frame = 0
Query:    1 MRGGANVAFFWLLLVILGSCVLSFSLS-TLPSR-FHYHTEQRQQQQQQQQQQLQFGSSSPRPRPRRHLGHSPPTCLIMVQSLNFQGILAVGQVLRNPSLMLPHISIKHIGLLDFELLRQAGIKGIVFDKDNTLTAPYIDSIHPQVAAAFENSKRVFGAKRLLIISNSAGTLDDTNYEAATRIEAELGVPVLRHSIKKPGAIPEVLEHFKRECGPETTYENLCIIGDRLLTDVMWGNFAGMFTVHTQILTPMGDNKVAAIVRRLENVACRILSRHWTAMPHPALASRVVFGE-AGEGEGGGG 299
            MR    +   WLLLV L    +S+S S TL S+ F  ++E                   P  RPRRHLG  PPT ++MVQSLN QG+LA+GQV+RNPSLMLPH+S+KHIG LDFELLRQAGIKG++FDKDNT+TAPY+D +H QVA AFE SKRVFG ++L+IISNSAGTLDD+ + AA RIE+ LGVPVLRH++KKPGAIPEVLEHFK+ECGP+TTYE+LCIIGDRLLTDVMWGNFAGM TVHTQILTP GDNKVAAIVRRLEN   RILS HW+A  HPA+  +VV G   GEG+GG G
Sbjct:   19 MRDSVALVLLWLLLVALIHSGISWSSSGTLLSKAFRPNSEHL-----------------PLSRPRRHLGFGPPTSVVMVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLENGFSRILSPHWSAPSHPAMGKKVVVGSGGGEGKGGRG 302          
The following BLAST results are available for this feature:
BLAST of NO07G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27251.11.600e-10566.45haloacid dehalogenase superfamily protein [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01080NO07G01080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01080.1NO07G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01080.1.cds1NO07G01080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01080.1.cds2NO07G01080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01080.1.cds3NO07G01080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01080.1 ID=NO07G01080.1|Name=NO07G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGCGCGGTGGCGCTAACGTGGCCTTCTTCTGGCTCCTGCTCGTCATCTT
GGGCTCGTGCGTCCTCTCCTTTTCTCTATCTACCTTGCCCTCCCGCTTTC
ACTACCACACTGAGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TTGCAGTTCGGCTCATCCTCTCCTCGACCGCGTCCTCGTCGACATCTCGG
CCACAGTCCACCCACTTGTCTTATCATGGTGCAAAGCCTGAACTTCCAAG
GCATCCTGGCCGTGGGTCAAGTCCTTCGCAACCCTTCCTTGATGCTCCCG
CACATCTCGATCAAGCACATCGGCCTGCTAGACTTTGAGCTCTTGCGACA
AGCCGGCATCAAAGGCATTGTTTTTGACAAGGACAATACCCTCACCGCCC
CCTACATCGACTCCATCCACCCGCAAGTCGCCGCTGCTTTCGAAAACTCC
AAACGCGTGTTCGGCGCCAAGAGGCTCCTCATCATTTCCAATTCTGCGGG
TACCCTTGACGATACCAACTACGAGGCAGCCACGCGGATCGAGGCAGAAC
TGGGTGTGCCCGTCCTAAGACATTCGATCAAAAAGCCAGGGGCTATCCCC
GAGGTACTAGAACATTTTAAACGAGAATGTGGTCCAGAGACGACCTACGA
AAACTTGTGTATCATTGGTGATCGGCTTTTGACTGATGTCATGTGGGGAA
ATTTCGCTGGCATGTTCACGGTGCATACGCAGATCTTGACCCCGATGGGG
GATAATAAAGTGGCAGCAATCGTGAGAAGGTTGGAGAATGTGGCGTGCAG
AATTTTGAGCCGACACTGGACGGCGATGCCGCATCCAGCGTTGGCATCCC
GGGTGGTGTTTGGTGAGGCCGGGGAGGGGGAGGGGGGAGGAGGAGAGGCT
AAGAAGGAAGCTTGA
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protein sequence of NO07G01080.1

>NO07G01080.1-protein ID=NO07G01080.1-protein|Name=NO07G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MRGGANVAFFWLLLVILGSCVLSFSLSTLPSRFHYHTEQRQQQQQQQQQQ
LQFGSSSPRPRPRRHLGHSPPTCLIMVQSLNFQGILAVGQVLRNPSLMLP
HISIKHIGLLDFELLRQAGIKGIVFDKDNTLTAPYIDSIHPQVAAAFENS
KRVFGAKRLLIISNSAGTLDDTNYEAATRIEAELGVPVLRHSIKKPGAIP
EVLEHFKRECGPETTYENLCIIGDRLLTDVMWGNFAGMFTVHTQILTPMG
DNKVAAIVRRLENVACRILSRHWTAMPHPALASRVVFGEAGEGEGGGGEA
KKEA*
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mRNA from alignment at chr7:353706..354919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01080.1 ID=NO07G01080.1|Name=NO07G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at chr7:353706..354919- (Nannochloropsis oceanica)
ATGCGCGGTGGCGCTAACGTGGCCTTCTTCTGGCTCCTGCTCGTCATCTT GGGCTCGTGCGTCCTCTCCTTTTCTCTATCTACCTTGCCCTCCCGCTTTC ACTACCACACTGAGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG TTGCAGTTCGGCTCATCCTCTCCTCGACCGCGTCCTCGTCGACATCTCGG CCACAGTCCACCCACTTGTCTTATCATGGTGCAAAGCCTGAACTTCCAAG GCATCCTGGCCGTGGGTCAAGTCCTTCGCAACCCTTCCTTGATGCTCCCG CACATCTCGATCAAGCACATCGGCCTGCTAGACTTTGAGCTCTTGCGACA AGCCGGTAAGTTGCACGGCAGACAGGAAGGGAGAATCATATTGCGAAAGA TGGAGGGCTCGTGAGATGCGTAGGTAGGCGTGGCTAGTGGACGCCTTGTG TTTTAAAAGGCTCTTCGCCAGTCGTCAACCTCTTCCGCTCATCCCTCTTT TGCCCTCCCTACCCACAGGCATCAAAGGCATTGTTTTTGACAAGGACAAT ACCCTCACCGCCCCCTACATCGACTCCATCCACCCGCAAGTCGCCGCTGC TTTCGAAAACTCCAAACGCGTGTTCGGCGCCAAGAGGCTCCTCATCATTT CCAATTCTGCGGGTACCCTTGACGATACCAACTACGAGGCAGCCACGCGG ATCGAGGCAGAACTGGGTACGTTTCTGAACCAAATAATGTTGAACCTTTC TGCCTAAAATTGCCATTAGCAGCACAAGAAGGTTCATGTCGCTACTCTCT ATCTTCTGTACACTGACAACCTTCACTCCCTCCTCCCCTTGCCTCCCCCT AGGTGTGCCCGTCCTAAGACATTCGATCAAAAAGCCAGGGGCTATCCCCG AGGTACTAGAACATTTTAAACGAGAATGTGGTCCAGAGACGACCTACGAA AACTTGTGTATCATTGGTGATCGGCTTTTGACTGATGTCATGTGGGGAAA TTTCGCTGGCATGTTCACGGTGCATACGCAGATCTTGACCCCGATGGGGG ATAATAAAGTGGCAGCAATCGTGAGAAGGTTGGAGAATGTGGCGTGCAGA ATTTTGAGCCGACACTGGACGGCGATGCCGCATCCAGCGTTGGCATCCCG GGTGGTGTTTGGTGAGGCCGGGGAGGGGGAGGGGGGAGGAGGAGAGGCTA AGAAGGAAGCTTGA
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Coding sequence (CDS) from alignment at chr7:353706..354919-

>NO07G01080.1 ID=NO07G01080.1|Name=NO07G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr7:353706..354919- (Nannochloropsis oceanica)
ATGCGCGGTGGCGCTAACGTGGCCTTCTTCTGGCTCCTGCTCGTCATCTT
GGGCTCGTGCGTCCTCTCCTTTTCTCTATCTACCTTGCCCTCCCGCTTTC
ACTACCACACTGAGCAGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TTGCAGTTCGGCTCATCCTCTCCTCGACCGCGTCCTCGTCGACATCTCGG
CCACAGTCCACCCACTTGTCTTATCATGGTGCAAAGCCTGAACTTCCAAG
GCATCCTGGCCGTGGGTCAAGTCCTTCGCAACCCTTCCTTGATGCTCCCG
CACATCTCGATCAAGCACATCGGCCTGCTAGACTTTGAGCTCTTGCGACA
AGCCGGCATCAAAGGCATTGTTTTTGACAAGGACAATACCCTCACCGCCC
CCTACATCGACTCCATCCACCCGCAAGTCGCCGCTGCTTTCGAAAACTCC
AAACGCGTGTTCGGCGCCAAGAGGCTCCTCATCATTTCCAATTCTGCGGG
TACCCTTGACGATACCAACTACGAGGCAGCCACGCGGATCGAGGCAGAAC
TGGGTGTGCCCGTCCTAAGACATTCGATCAAAAAGCCAGGGGCTATCCCC
GAGGTACTAGAACATTTTAAACGAGAATGTGGTCCAGAGACGACCTACGA
AAACTTGTGTATCATTGGTGATCGGCTTTTGACTGATGTCATGTGGGGAA
ATTTCGCTGGCATGTTCACGGTGCATACGCAGATCTTGACCCCGATGGGG
GATAATAAAGTGGCAGCAATCGTGAGAAGGTTGGAGAATGTGGCGTGCAG
AATTTTGAGCCGACACTGGACGGCGATGCCGCATCCAGCGTTGGCATCCC
GGGTGGTGTTTGGTGAGGCCGGGGAGGGGGAGGGGGGAGGAGGAGAGGCT
AAGAAGGAAGCTTGA
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Synonyms
Publications