NO07G01050.1, NO07G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01050.1
Unique NameNO07G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1323
Alignment locationchr7:339308..340711 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:339308..340711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01050.1 vs.
Match: EWM27273.1 (actin related protein [Nannochloropsis gaditana])

HSP 1 Score: 634.4 bits (1635), Expect = 2.600e-178
Identity = 316/451 (70.07%), Postives = 361/451 (80.04%), Query Frame = 0 
Query:    1 MYVPQDGIDIGAVVAEIGAHAAKLGFAGEDQPRAYFPSHTGYLSPDDSAMDTVPPAK----NNKHTPRKEYKFDLGHNDERLEVHNPLSGGLINDWDMVEQIWQHANKTALSVDFAHTPLLLIERAFAPPKLRHEYVELMFEKFQSPALFMAKDSVLSCFACGKTTGLVVDIGAETSTVAPVQDGWLEAKGLVRSRLGGRMVDRYLLSLLEKNGVVVQPFLRQPPAVGGSRKGGGGEGMSASFREYATLEVVRGLKESVCRMPEVAFSLTDPKFSAAPKVNYELPDGVMVAAGIERFRAAEIYMCPEPAWECLPGAEGEEG-----GEEGGKEED--WSREALPKMVADAVLKCERDQLSPLLNSIVLAGGGACVEGTMERLKSEVETAIYGEGQGGYGRVKVIQAGAQERKICAWLGGSIVASLGSFHEMWVSKAEYAERGAGVIDAKCP 441
            MY PQ G+++ AVVAEIG +AA+LGFAGED PR+YFPS  G++ PDDS      P+     N+K   RKEYKFDLGHND R+ VH PLSGGL+ DWDMVEQIWQHANKTAL+VD A TPLLLIERAF   KLR EY ELMFEKFQSPALF+AKDSVLSCFACGKT+GLVVDIGAET+TV PVQDGWLEAKGL+RS LGGRMVDRYL + LE +GV + PFL QPP  G       GEGMSAS+R++ATLEVVRGLKESVCRMPE + +  DPK S+ PK NYELPDG +V+AG ERF+AA+I M PEPAWE +P    EE      GEEGGKE +  WSRE+LP+M A AV +CE++Q SPLL+S+VLAGGGAC+EGTMERLK E+E A+YG GQ G  RVKV+QAG QERKICAWLGGSIV SLG+FHEMWVSKAEY ERGA V+D KCP
Sbjct:    1 MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGT------GEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
The following BLAST results are available for this feature:
BLAST of NO07G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27273.12.600e-17870.07actin related protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01050NO07G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01050.1NO07G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01050.1.cds1NO07G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01050.1.cds2NO07G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01050.1 ID=NO07G01050.1|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
ATGTATGTCCCCCAAGACGGTATAGATATTGGTGCGGTGGTGGCAGAGAT
TGGGGCGCATGCGGCCAAGCTGGGTTTTGCGGGCGAGGACCAACCCCGGG
CCTACTTCCCCTCCCATACCGGGTACTTATCACCAGACGACTCCGCAATG
GACACGGTCCCGCCCGCCAAAAACAACAAACACACTCCTCGTAAAGAGTA
CAAATTTGACTTAGGCCACAATGACGAGCGTCTGGAAGTCCACAATCCGT
TGTCGGGCGGTTTGATCAATGACTGGGACATGGTGGAGCAAATCTGGCAG
CATGCCAACAAGACTGCCCTCAGCGTAGACTTCGCCCATACTCCTCTTCT
CCTTATCGAGCGCGCATTTGCTCCCCCCAAACTCCGCCATGAATACGTCG
AGCTCATGTTCGAGAAGTTTCAGTCTCCCGCACTATTCATGGCGAAGGAC
AGTGTGCTAAGTTGTTTTGCGTGTGGGAAAACAACGGGGTTAGTGGTGGA
TATCGGAGCCGAGACGTCGACCGTTGCCCCCGTTCAAGACGGATGGTTGG
AGGCGAAGGGCCTTGTGCGTTCTCGCCTGGGAGGTAGGATGGTGGATCGA
TATTTGCTCAGCTTGCTAGAGAAGAATGGCGTTGTAGTCCAGCCCTTCCT
GCGGCAACCTCCCGCGGTGGGAGGCTCTCGAAAAGGAGGTGGAGGTGAAG
GAATGAGTGCCAGCTTCCGCGAATACGCGACGTTGGAAGTAGTGCGGGGA
TTGAAGGAGAGTGTGTGTCGGATGCCAGAGGTTGCATTCTCTCTTACCGA
CCCCAAGTTCTCGGCTGCTCCGAAAGTAAATTACGAGCTACCTGATGGAG
TAATGGTAGCAGCAGGCATAGAAAGGTTCCGAGCAGCAGAGATCTACATG
TGCCCGGAGCCCGCCTGGGAGTGCCTTCCAGGTGCCGAAGGGGAGGAGGG
AGGGGAGGAAGGAGGGAAGGAGGAAGATTGGAGTAGGGAGGCGTTGCCGA
AGATGGTGGCGGACGCGGTATTGAAGTGTGAGAGAGACCAGCTGTCCCCC
TTGCTCAACAGTATAGTGCTTGCCGGAGGGGGAGCATGCGTGGAGGGAAC
GATGGAGCGGTTGAAAAGTGAAGTGGAGACGGCAATATATGGGGAGGGGC
AGGGAGGGTATGGGCGTGTTAAGGTCATTCAGGCGGGGGCGCAGGAGAGA
AAGATATGTGCATGGCTGGGAGGGTCGATAGTCGCTAGCTTGGGTAGCTT
CCACGAGATGTGGGTTAGTAAGGCTGAGTATGCAGAGAGGGGGGCTGGGG
TAATTGATGCCAAATGTCCATGA
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protein sequence of NO07G01050.1

>NO07G01050.1-protein ID=NO07G01050.1-protein|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MYVPQDGIDIGAVVAEIGAHAAKLGFAGEDQPRAYFPSHTGYLSPDDSAM
DTVPPAKNNKHTPRKEYKFDLGHNDERLEVHNPLSGGLINDWDMVEQIWQ
HANKTALSVDFAHTPLLLIERAFAPPKLRHEYVELMFEKFQSPALFMAKD
SVLSCFACGKTTGLVVDIGAETSTVAPVQDGWLEAKGLVRSRLGGRMVDR
YLLSLLEKNGVVVQPFLRQPPAVGGSRKGGGGEGMSASFREYATLEVVRG
LKESVCRMPEVAFSLTDPKFSAAPKVNYELPDGVMVAAGIERFRAAEIYM
CPEPAWECLPGAEGEEGGEEGGKEEDWSREALPKMVADAVLKCERDQLSP
LLNSIVLAGGGACVEGTMERLKSEVETAIYGEGQGGYGRVKVIQAGAQER
KICAWLGGSIVASLGSFHEMWVSKAEYAERGAGVIDAKCP*
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mRNA from alignment at chr7:339308..340711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01050.1 ID=NO07G01050.1|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr7:339308..340711- (Nannochloropsis oceanica)
ATGTATGTCCCCCAAGGTAAGCAGCCAGCCACGATGACAAAAGCAATGCG
GAGGCTAGCCGCTCATGACGATCAAACACACCGCTCTACCACATCAGACG
GTATAGATATTGGTGCGGTGGTGGCAGAGATTGGGGCGCATGCGGCCAAG
CTGGGTTTTGCGGGCGAGGACCAACCCCGGGCCTACTTCCCCTCCCATAC
CGGGTACTTATCACCAGACGACTCCGCAATGGACACGGTCCCGCCCGCCA
AAAACAACAAACACACTCCTCGTAAAGAGTACAAATTTGACTTAGGCCAC
AATGACGAGCGTCTGGAAGTCCACAATCCGTTGTCGGGCGGTTTGATCAA
TGACTGGGACATGGTGGAGCAAATCTGGCAGCATGCCAACAAGACTGCCC
TCAGCGTAGACTTCGCCCATACTCCTCTTCTCCTTATCGAGCGCGCATTT
GCTCCCCCCAAACTCCGCCATGAATACGTCGAGCTCATGTTCGAGAAGTT
TCAGTCTCCCGCACTATTCATGGCGAAGGACAGTGTGCTAAGTTGTTTTG
CGTGTGGGAAAACAACGGGGTTAGTGGTGGATATCGGAGCCGAGACGTCG
ACCGTTGCCCCCGTTCAAGACGGATGGTTGGAGGCGAAGGGCCTTGTGCG
TTCTCGCCTGGGAGGTAGGATGGTGGATCGATATTTGCTCAGCTTGCTAG
AGAAGAATGGCGTTGTAGTCCAGCCCTTCCTGCGGCAACCTCCCGCGGTG
GGAGGCTCTCGAAAAGGAGGTGGAGGTGAAGGAATGAGTGCCAGCTTCCG
CGAATACGCGACGTTGGAAGTAGTGCGGGGATTGAAGGAGAGTGTGTGTC
GGATGCCAGAGGTTGCATTCTCTCTTACCGACCCCAAGTTCTCGGCTGCT
CCGAAAGTAAATTACGAGCTACCTGATGGAGTAATGGTAGCAGCAGGCAT
AGAAAGGTTCCGAGCAGCAGAGATCTACATGTGCCCGGAGCCCGCCTGGG
AGTGCCTTCCAGGTGCCGAAGGGGAGGAGGGAGGGGAGGAAGGAGGGAAG
GAGGAAGATTGGAGTAGGGAGGCGTTGCCGAAGATGGTGGCGGACGCGGT
ATTGAAGTGTGAGAGAGACCAGCTGTCCCCCTTGCTCAACAGTATAGTGC
TTGCCGGAGGGGGAGCATGCGTGGAGGGAACGATGGAGCGGTTGAAAAGT
GAAGTGGAGACGGCAATATATGGGGAGGGGCAGGGAGGGTATGGGCGTGT
TAAGGTCATTCAGGCGGGGGCGCAGGAGAGAAAGATATGTGCATGGCTGG
GAGGGTCGATAGTCGCTAGCTTGGGTAGCTTCCACGAGATGTGGGTTAGT
AAGGCTGAGTATGCAGAGAGGGGGGCTGGGGTAATTGATGCCAAATGTCC
ATGA
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Coding sequence (CDS) from alignment at chr7:339308..340711-

>NO07G01050.1 ID=NO07G01050.1|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at chr7:339308..340711- (Nannochloropsis oceanica)
ATGTATGTCCCCCAAGACGGTATAGATATTGGTGCGGTGGTGGCAGAGAT
TGGGGCGCATGCGGCCAAGCTGGGTTTTGCGGGCGAGGACCAACCCCGGG
CCTACTTCCCCTCCCATACCGGGTACTTATCACCAGACGACTCCGCAATG
GACACGGTCCCGCCCGCCAAAAACAACAAACACACTCCTCGTAAAGAGTA
CAAATTTGACTTAGGCCACAATGACGAGCGTCTGGAAGTCCACAATCCGT
TGTCGGGCGGTTTGATCAATGACTGGGACATGGTGGAGCAAATCTGGCAG
CATGCCAACAAGACTGCCCTCAGCGTAGACTTCGCCCATACTCCTCTTCT
CCTTATCGAGCGCGCATTTGCTCCCCCCAAACTCCGCCATGAATACGTCG
AGCTCATGTTCGAGAAGTTTCAGTCTCCCGCACTATTCATGGCGAAGGAC
AGTGTGCTAAGTTGTTTTGCGTGTGGGAAAACAACGGGGTTAGTGGTGGA
TATCGGAGCCGAGACGTCGACCGTTGCCCCCGTTCAAGACGGATGGTTGG
AGGCGAAGGGCCTTGTGCGTTCTCGCCTGGGAGGTAGGATGGTGGATCGA
TATTTGCTCAGCTTGCTAGAGAAGAATGGCGTTGTAGTCCAGCCCTTCCT
GCGGCAACCTCCCGCGGTGGGAGGCTCTCGAAAAGGAGGTGGAGGTGAAG
GAATGAGTGCCAGCTTCCGCGAATACGCGACGTTGGAAGTAGTGCGGGGA
TTGAAGGAGAGTGTGTGTCGGATGCCAGAGGTTGCATTCTCTCTTACCGA
CCCCAAGTTCTCGGCTGCTCCGAAAGTAAATTACGAGCTACCTGATGGAG
TAATGGTAGCAGCAGGCATAGAAAGGTTCCGAGCAGCAGAGATCTACATG
TGCCCGGAGCCCGCCTGGGAGTGCCTTCCAGGTGCCGAAGGGGAGGAGGG
AGGGGAGGAAGGAGGGAAGGAGGAAGATTGGAGTAGGGAGGCGTTGCCGA
AGATGGTGGCGGACGCGGTATTGAAGTGTGAGAGAGACCAGCTGTCCCCC
TTGCTCAACAGTATAGTGCTTGCCGGAGGGGGAGCATGCGTGGAGGGAAC
GATGGAGCGGTTGAAAAGTGAAGTGGAGACGGCAATATATGGGGAGGGGC
AGGGAGGGTATGGGCGTGTTAAGGTCATTCAGGCGGGGGCGCAGGAGAGA
AAGATATGTGCATGGCTGGGAGGGTCGATAGTCGCTAGCTTGGGTAGCTT
CCACGAGATGTGGGTTAGTAAGGCTGAGTATGCAGAGAGGGGGGCTGGGG
TAATTGATGCCAAATGTCCATGA
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Synonyms
Publications