NO07G01040.1, NO07G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01040.1
Unique NameNO07G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1875
Alignment locationchr7:337192..339066 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:337192..339066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01040.1 vs.
Match: EWM27288.1 (hypothetical protein Naga_100080g23 [Nannochloropsis gaditana])

HSP 1 Score: 530.4 bits (1365), Expect = 7.500e-147
Identity = 296/540 (54.81%), Postives = 372/540 (68.89%), Query Frame = 0 
Query:   17 PSSSSICSSASSSSCPSSSSGAYEWGTWPWICEHVHLVLAFSETAFLLLKEALGLSWVAICAWSRLGIVLSRPVLRLLFYLWSLALPYMQWFARTFFNHLKEQEPEVLIGYACFLGALIGFLLIRRLLRRLRVWDRCRAFVTRKVVMVEYRYHQARNKLHAYSQRAAEALPHVLFALGSVGAVWLFPKATHMLSQELVFHILLLYLPALATFYAVECSPFPPSPPSTATATSLRSKQGKPPSYPSSSTPATTPPWQEQT----------KHTKRLNEWLSYWIMTSLVLTFGNLLEQLYLRWFTRLLPFSNEAFLFFLLWLHLPQGGHALLKQHLLPFLRRHLGGILYFQKKRDSFMKHVLSVAVFTRLLSTATADLLALHVDEMFLVLPAAVLSLSPLAGWGLLFISLIFPGFASIRALGSSGG-------------NGISKGGVHYSPIPWLKYWVVYAVSHILFQLMPFWSVIQMWFYLWILLPFELEGVPVLHKLKFDGRRRIWGVLRSVYRQEVMIIGGAGAGAGKVAAAGKMAG 534
            P SS+  S  S SS PS+     EW TWPW   +++L L FSE A +LL+EAL  SW+A+ AW RLG++L RPVLRLL +LW  ALPY+QWFA+ F NHLKEQEPEVL+GY  FLGA++GF L+RRLLRRLRVWDRCRA +  KV +VE RYHQARNKL+ YS+RAAEA PHVLF +  +   WLFP  T +LSQ+LVF+ LLLYLPA A+F+A+E   FPP   S   +T  R    KP   PS+S  ++T      T          KH KRL E LSYWI+ + ++  G  L+QL+LRW T+ +P+ +E FL+FLLWLHLPQGG ALLK HLLPFLRRHLGGIL  Q +RD+ ++ +LS+AVF  LLS  TAD LALHVDE FLVLPAAVL+ SP AGWGLLFISL+FP  AS RALG  GG              G S+    YSP PWL+YW+VYA+ H++FQ++P W ++QMW +LW+LLP +L G+P L  +K DGRR+++G+L  ++R E+   GG   G  +    G   G
Sbjct:   24 PHSSTPLSGHSISSPPSN-----EWWTWPWFNANLNLFLTFSEKAIILLREALSASWLALHAWYRLGVLLGRPVLRLLLHLWRSALPYLQWFAKAFINHLKEQEPEVLLGYGLFLGAVVGFFLLRRLLRRLRVWDRCRATIASKVALVECRYHQARNKLNQYSRRAAEAFPHVLFVVACLAVQWLFPAVTSLLSQKLVFNALLLYLPAFASFHALE--SFPPRKASFPGSTGTR--HAKPADLPSTSRASSTAARLAPTGAPSHSHGDDKHEKRLKECLSYWIVAASIVAAGQGLDQLWLRWTTKWVPWGHECFLYFLLWLHLPQGGGALLKHHLLPFLRRHLGGILALQSRRDALVRRLLSLAVFAHLLSHPTADNLALHVDEFFLVLPAAVLTFSPFAGWGLLFISLLFPVLASARALGEEGGKRPVGSKGTKKETGGRSQSPPTYSPRPWLQYWIVYALGHVIFQVLPIWPLVQMWVFLWVLLP-DLAGIPFL-PIKLDGRRQVYGLLSRLHRLEMAGAGGKFQGQEQANPPGAEDG 552
The following BLAST results are available for this feature:
BLAST of NO07G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27288.17.500e-14754.81hypothetical protein Naga_100080g23 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01040NO07G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01040.1NO07G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01040.1.cds1NO07G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01040.1 ID=NO07G01040.1|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp
ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC
GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT
CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT
GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA
AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA
TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG
GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA
GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC
TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG
GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG
ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG
AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG
TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT
CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT
CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA
AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC
TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT
GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC
CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA
CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC
ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA
GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT
AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC
TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG
TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT
TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA
TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG
GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC
GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG
AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC
TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG
AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG
CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG
ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT
GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA
AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG
GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT
CTTGGGAGGTGGGGGAGGAAGATGA
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protein sequence of NO07G01040.1

>NO07G01040.1-protein ID=NO07G01040.1-protein|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MEEESAASFFHTSEDDPSSSSICSSASSSSCPSSSSGAYEWGTWPWICEH
VHLVLAFSETAFLLLKEALGLSWVAICAWSRLGIVLSRPVLRLLFYLWSL
ALPYMQWFARTFFNHLKEQEPEVLIGYACFLGALIGFLLIRRLLRRLRVW
DRCRAFVTRKVVMVEYRYHQARNKLHAYSQRAAEALPHVLFALGSVGAVW
LFPKATHMLSQELVFHILLLYLPALATFYAVECSPFPPSPPSTATATSLR
SKQGKPPSYPSSSTPATTPPWQEQTKHTKRLNEWLSYWIMTSLVLTFGNL
LEQLYLRWFTRLLPFSNEAFLFFLLWLHLPQGGHALLKQHLLPFLRRHLG
GILYFQKKRDSFMKHVLSVAVFTRLLSTATADLLALHVDEMFLVLPAAVL
SLSPLAGWGLLFISLIFPGFASIRALGSSGGNGISKGGVHYSPIPWLKYW
VVYAVSHILFQLMPFWSVIQMWFYLWILLPFELEGVPVLHKLKFDGRRRI
WGVLRSVYRQEVMIIGGAGAGAGKVAAAGKMAGARGEAGGGESREGPQQE
MQQPEGGDEEKSIHPPVSSTSSSFASEKSNTELKRRSGGGRKEMGVLRRE
EEEMEGEEGEGEVKGEVLGGGGGR*
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mRNA from alignment at chr7:337192..339066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01040.1 ID=NO07G01040.1|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at chr7:337192..339066+ (Nannochloropsis oceanica)
ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC
GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT
CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT
GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA
AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA
TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG
GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA
GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC
TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG
GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG
ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG
AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG
TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT
CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT
CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA
AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC
TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT
GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC
CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA
CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC
ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA
GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT
AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC
TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG
TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT
TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA
TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG
GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC
GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG
AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC
TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG
AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG
CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG
ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT
GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA
AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG
GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT
CTTGGGAGGTGGGGGAGGAAGATGA
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Coding sequence (CDS) from alignment at chr7:337192..339066+

>NO07G01040.1 ID=NO07G01040.1|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr7:337192..339066+ (Nannochloropsis oceanica)
ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC
GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT
CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT
GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA
AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA
TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG
GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA
GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC
TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG
GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG
ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG
AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG
TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT
CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT
CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA
AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC
TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT
GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC
CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA
CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC
ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA
GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT
AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC
TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG
TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT
TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA
TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG
GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC
GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG
AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC
TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG
AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG
CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG
ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT
GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA
AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG
GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT
CTTGGGAGGTGGGGGAGGAAGATGA
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Synonyms
Publications