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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:332239..336814 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01030.2 vs.
Match: EWM27294.1 (ribosomal protein l17 [Nannochloropsis gaditana]) HSP 1 Score: 245.7 bits (626), Expect = 3.100e-61 Identity = 131/158 (82.91%), Postives = 140/158 (88.61%), Query Frame = 0
Query: 1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTREHLKKLFDVLGPRYLTRAGGYTRILKLQRWRPGDAADMSLIEFVARPGELRPARPPQRLPAGETRMASSLQAMAANSSKVKVSLPTSSS 159
MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRT+EHLKKLFDVLGPRYLTRAGGYTR+LKLQR+RPGDAA+MSLIEFV RPGELRPARPPQ E +++SS +AM V S+P SS
Sbjct: 1 MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARPPQT----EIKLSSSGKAM--GKEDVISSVPPRSS 152
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01030.2 ID=NO07G01030.2|Name=NO07G01030.2|organism=Nannochloropsis oceanica|type=mRNA|length=2403bp ATGCCCTATCGCAAGCTGGGACGGACGTCGTCCCATCGGTGGGCAATGCT CCGGAATATGGTCACATCCTTGGTGGAACACGAGCGCATTCGCACCACCA CAGCCAAGGCCAAGGAGCTCCGGCGGGTAGCGGACCGAATGGTTACCTGG GCAAAGGACGGTTCCCTGCACGCACGTCGACAAGCCGCCATGGTCATCCG CACCCGCGAGCACCTCAAAAAACTATTTGACGTTCTGGGCCCTCGATATC TCACACGAGCAGGCGGGTACACGCGTATTTTGAAGCTTCAGAGGTGGCGA CCTGGGGATGCTGCCGACATGAGCTTGATTGAGTTTGTTGCTCGGCCAGG AGAGTTAAGGCCGGCGCGGCCGCCACAACGACTACCAGCAGGGGAAACAA GAATGGCGTCGTCGTTGCAGGCGATGGCGGCTAATTCGAGCAAGGTTAAG GTCTCTCTTCCTACCTCGTCCTCACCCAAGAGATACAATCGCAACTACAA CTGCAGTAGATGCACATTTAGCACGACGGGGCCTACACGAAGCAAAAAGC ATTCTACTGGCCTGGCAGGAAGTGGAGTAGCGGGAGGGGCAAAAACAGAC CATCCCATACCCAGGGAGGCAAAGATGACGGTCACAAAGAAATCACTCTC CGTCCTCGTCCTCTGTACATTCGGTACCTTGTTGGCAGCCTTGAAGTACC ACCGGGGCGGGCCGACCACGCAAAGCGTCTTGCAATGGGGCAGCGACCGG CTTTTGTTGCTAGGCATAGGAGGGGAGAAGAAGGAAGCAGATGGGGCAGC AGGGCGGTTGTTGGCGATTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAAACACAGCTGTTCAAGAGGCGTTGCCT GATGACCGAGCCCTAATCCCCACCCGCGACCCCCACAAACGACTGAAACG CACCTTTTTCCTAGACGCCGGCAAGGCCGCCATGCAAGTCATCCATTTGC CTCTTAAAACCATCATGCTCGGAATCCAGAAGCTGCTCTCCCTTGGAAAA GGGGGAGGGAAGAAGGGAGGAAAGAAGCTGCAGCACCCGCAGCAGTCATC CTCTGCGACCAAGAGAGGAGTTTTGGACATGGCGTCGTTAACGGAGGAAG AATTGTTGTGGGTGGAAGAGGTGTATCAACCCCTTATTGCCATGCCCGGC ATCGCGGACCGGGGGCTTGCTGTCAAGATGCCCATCGACCGGGAGTGTGT CGCTCGATACTTTATCGCTGCCCAGTGGAAGCCGGCCATGAGGGGCCAGC CGACAGTGGACGCAATTTTACGCACTCTGAGATGGAGGGAGGATGAACGA GTAGCAGTGTTGGAACCAGAAGACGTACTAGCACAGGCCTGGGATGGCTA CCTGTACGTCAACGGCACGGACAGGATTGGGCGGCCGATGATTTATTTTA GACCGGCGTTTCAGGTAGGATCCTGTCGTCTCCCTCCTTCCTTCCCTCCC TCCCCGTATTCTTTTCCTCCGGTCTTCCTTGACCTGTTGTTGGCTGGGTA GGACCCACACAACACCTTCCCTCAACCACACACACGCACACCTCATCCTC CTCTCATCCCTAGGCCAATCAACATCCCGAGAAAGCGATCCAGTACCTAG TCTACACCCTCGAACGTGCTCTGGACCTCTCCCGGGAAGAGAACGGAGGG GTCGAGGCCTACTCCTTCGTGATTGATTGCAGTGGATTTTCACTTTCCAA CATTCCCCCGGTCAATATCATCAAGCAGACATTTACGCTGCTTCATCACC ACTATCCTACCCGTGTGGGGTTTATTGTCTTTTTGTACACAGGCTCGGCG TTCCAGTTGCTCTGGAAGGTGCTTACCCCCTTGGTCAGCCCTATGACGAG AAACAAGATTTTGTTTGTCCCTGCAGGGAAGGAGAAGAATGAATTGTTGA AAAGAGTGGAAGAAGAGCAGTTGGACGAGAGATATGGAGGGCAGAGGGGC TTTTCATTTGTGCCGCATGAGTACTTTGGGGTGAGTGAGGAGGAGGCGAA GAAGATGCATGAGAAGGAAGGGAAGAATGAAGTTAAGGGAGGGGGGAAGG ACAAAGGGAGGGACGAGGGGAAGAGAGGAAAGACATGTGGAGGGGGCGAC AGCTAAACGCCCAAGTTGAGTCGTGAAAGCAGGACAAGGGGGATGGGAGG GAAGAGGGAAAGAGGGAGGGGAGCTGAAGGAAGTGGGATGAGAGATTGAT TCTCTCTTGTGAGTTTAACTGTTCAATAGTCGAGTTTGTACAATTCAATT GTAGGGGAAATGTAGGTGCATGCAGAGTGCGTAGGGGTAGTCCCCAGAGA GAGGGAGAGGGATGGCAATGATGGAAGGGGAGGGGGGAGGTTGGTCATTG GCG back to topprotein sequence of NO07G01030.2 >NO07G01030.2-protein ID=NO07G01030.2-protein|Name=NO07G01030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp MPYRKLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTW AKDGSLHARRQAAMVIRTREHLKKLFDVLGPRYLTRAGGYTRILKLQRWR PGDAADMSLIEFVARPGELRPARPPQRLPAGETRMASSLQAMAANSSKVK VSLPTSSSPKRYNRNYNCSRCTFSTTGPTRSKKHSTGLAGSGVAGGAKTD HPIPREAKMTVTKKSLSVLVLCTFGTLLAALKYHRGGPTTQSVLQWGSDR LLLLGIGGEKKEADGAAGRLLAIGGGGGGGGGGGGGGGGGGNTAVQEALP DDRALIPTRDPHKRLKRTFFLDAGKAAMQVIHLPLKTIMLGIQKLLSLGK GGGKKGGKKLQHPQQSSSATKRGVLDMASLTEEELLWVEEVYQPLIAMPG IADRGLAVKMPIDRECVARYFIAAQWKPAMRGQPTVDAILRTLRWREDER VAVLEPEDVLAQAWDGYLYVNGTDRIGRPMIYFRPAFQVGSCRLPPSFPP SPYSFPPVFLDLLLAG* back to topmRNA from alignment at chr7:332239..336814- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01030.2 ID=NO07G01030.2|Name=NO07G01030.2|organism=Nannochloropsis oceanica|type=mRNA|length=4576bp|location=Sequence derived from alignment at chr7:332239..336814- (Nannochloropsis oceanica) ATGCCCTATCGCAAGCTGGGACGGACGTCGTCCCATCGGTGGGCAATGCT
CCGGAATATGGTCACATCCTTGGTGGAACACGAGCGCATTCGCACCACCA
CAGCCAAGGTCAGTCAATGAGGGAGGATTGGAGGGAGGGAGGAGGCAGAG
TATGGGAATTTGTGCGTGTATTTGGCGGACACAAGCCCGTAAATGGCCTG
CAGACCGGGCGACAAGGAAGAGGAGAAGAAAGGCATGACTGTCCATGGGT
GTATGTCTGATTCACCGATAAGAGTGGGCCTTACCACCGCTCGCTTCCTC
GAGATTCACAAGGCGTTCGGGGTGATGGTACATGCATTTTGGGACCGAGA
GAATCCTTTCTGCACGAGTAATAATCGAATCAAGTACTTGTTTGAATGTA
TTATCTCTGAGGTTCTATTTTGAAAAGGCGCTCTCCGAATGGGTACCGCA
GTGAATGCTCATTTCCATCGGAACAGTCTCTGTAATGCATGGGTGCCCAT
CACCCCCTTGAACTAAAGCATTTGCGAGTAGAGTGCGTTGGGAATGGTAC
TTCTGGTTAGGATATGTTCAAATCATGCACTCCTCGGAGTGAAAGTGTGG
CGATTGAGACCTCCATGATGTCAGCATAAAGGCATGCAGGTCCGGCACCT
CCTCTTTCTCAGTCGATTTGCTCTCATGAATCATAAGGATTGGGAGGGCA
TACACTTCTTTCAACCCCAGAGGTGATATACAAAATGTAAAAATGTAAAC
TTGATACGATATACATGTCTTGTACATGAACATGATGAATACGCGCACAC
ACACACAAATCTAAACCTACCTACCTTCTCCATACACACAACACACAGGC
CAAGGAGCTCCGGCGGGTAGCGGACCGAATGGTTACCTGGGCAAAGGTAA
GCAACTTTAAAGCAACAGCACCCACCCAAGCGACCCTCTCTCCCTCCACG
ACTACTTCCAATTCTCTCCATCTCAACTTTTTCGAATTAAACCCTTCCCC
CCCTACTCCGACCACAGGACGGTTCCCTGCACGCACGTCGACAAGCCGCC
ATGGTCATCCGCACCCGCGAGCACCTCAAAAAACTATTTGACGTTCTGGG
CCCTCGATATCTCACACGAGCAGGCGGGTACACGCGTATTTTGAAGCTTC
AGAGGTGGCGACCTGGGGATGCTGCCGACATGAGCTTGATTGAGTTTGTT
GCTCGGCCAGGAGAGTTAAGGCCGGCGCGGCCGCCACAACGACTACCAGC
AGGGGAAACAAGAATGGCGTCGTCGTTGCAGGCGATGGCGGCTAATTCGA
GCAAGGTTAAGGTCTCTCTTCCTACCTCGTCCTCACCGTAAGTTCAAGGG
TAGAGAGGCGGGGAGAAGCGAGTAACGAGATTACAACAGCAACTTATGTA
CACAAGGATTTAAGAAGTGGTTGGAGGCGAGGAAGATGAGGACGAGAGAA
AAGAATAAAAAGAGAAGTGGAAAGGGCATAGGCCCGAGGCACTTGCTTCT
TTGGGAAGGGATGTGAGGGAGTAAAGGGAGGGGTGGGATAGCGAGGAGCA
CAACGCCAAGGAGGAGCCGATGAAAGCCCCCTCTCTGTGTATTTCTTTGA
TTGTTTGAAACCGCACTGGAGCAGTACCTCGGACATCTTTTAGGTGGTCG
TGTATTCACATGACATGACACAGACAAAATACGCGCCGAGAATTCGGAAT
GTCGGCGAGCGATGAGGGAGTGCGTACCGTTGCTCCTTGTCCCGTTCCCC
TTCCCACCACCACCACCACCACCTGCATGATTAAGGGGTATTCAAGTTGC
ATTTGCTGTCTAGTCACTTGCTCCTTATCCTGTACTTGTGCATGTGTGTC
TGTTCTAGCAGGCTGCTTCGCCAACCCATGCTTTGCCTCAACTTGGTTCG
TAACGCTGTCTTAGCCCCGCCCCACACCCACCATACACGCAGCAAGAGAT
ACAATCGCAACTACAACTGCAGTAGATGCACATTTAGCACGACGGGGCCT
ACACGAAGCAAAAAGCATTCTACTGGCCTGGCAGGAAGTGGAGTAGCGGG
AGGGGCAAAAACAGACCATCCCATACCCAGGGAGGCAAAGATGACGGTCA
CAAAGAAATCACTCTCCGTCCTCGTCCTCTGTACATTCGGTACCTTGTTG
GCAGCCTTGAAGGTATGTGGGATGGGTGATCGTGTGTGGTGTGATGCGCG
ATGGATGCCAAAGCAAGGGAATGGCATCCTTCGCCGTTCCGCCCGGCATG
GGTCCATCTACACACAGCACAACCAGACTCACTTGCTTAGAATATGCTTG
AAATAGTGCCCATGGTAACACTTATGATAGTATCGCTCGTTTCTCCCCGC
CCCAACACACACCCCTGTCCCTCTCTTCTCACTTCAGTCCACTCGCCCCG
CTTCCTACCTTCCTCAAACCACAACCAGTACCACCGGGGCGGGCCGACCA
CGCAAAGCGTCTTGCAATGGGGCAGCGACCGGCTTTTGTTGCTAGGCATA
GGAGGGGAGAAGAAGGAAGCAGATGGGGCAGCAGGGCGGTTGTTGGCGAT
TGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAAACACAGCTGTTCAAGAGGCGTTGCCTGATGACCGAGGTAAGTAC
GTCCGTATTGTCTTGGGCGACCACTGTGATCCCTCAGATCTGCAATATGC
ATGCATATCCGGTTTTTATTGCTTTACGGTGTGATGGCATGCTTCGGAAG
TGCCCGGTAGCAGTTGGATGGGTGGTTGTGTCGGTGAGTGCAGTAACCAT
GAATCCGCACTTTATTGGGTTCCTTGTTCGACCCCTTCCCCCCCTCCCTT
TTAATTTTTTAAAAAAGGAACGTATCGCATAAATTTTCTACCTCTTCTGA
CTCTTTTTCCTTTCTCTCATTTCTCCCTCCTTTCCCAAAAACCACCAGCC
CTAATCCCCACCCGCGACCCCCACAAACGACTGAAACGCACCTTTTTCCT
AGACGCCGGCAAGGCCGCCATGCAAGTCATCCATTTGCCTCTTAAAACCA
TCATGCTCGGAATCCAGAAGCTGCTCTCCCTTGGAAAAGGGGGAGGGAAG
AAGGGAGGAAAGAAGCTGCAGCACCCGCAGCAGTCATCCTCTGCGACCAA
GAGAGGAGTTTTGGACATGGCGTCGTTAACGGAGGAAGAATTGTTGTGGG
TGGAAGAGGTGTATCAACGTAAGTAGATAGGGTAGGAGGAAGAATGAGAA
GGAGGGAGGGGAGTAGGGAAAGATAGGGAAGGCGGGCAAAGGAGCTGGCA
TGGATTCCCACAATCCCCTTACCCGTCCTCCATCCCTCTCTCCCTACCTC
AAGCCCTTATTGCCATGCCCGGCATCGCGGACCGGGGGCTTGCTGTCAAG
ATGCCCATCGACCGGGAGTGTGTCGCTCGATACTTTATCGCTGCCCAGTG
GAAGCCGGCCATGAGGGGCCAGCCGACAGTGGACGCAATTTTACGCACTC
TGAGATGGAGGGAGGATGAACGAGTAGCAGTGTTGGAACCAGAAGACGTA
CTAGCACAGGCCTGGGATGGCTACCTGTACGTCAACGGCACGGACAGGAT
TGGGCGGCCGATGATTTATTTTAGACCGGCGTTTCAGGTAGGATCCTGTC
GTCTCCCTCCTTCCTTCCCTCCCTCCCCGTATTCTTTTCCTCCGGTCTTC
CTTGACCTGTTGTTGGCTGGGTAGGACCCACACAACACCTTCCCTCAACC
ACACACACGCACACCTCATCCTCCTCTCATCCCTAGGCCAATCAACATCC
CGAGAAAGCGATCCAGTACCTAGTCTACACCCTCGAACGTGCTCTGGACC
TCTCCCGGGAAGAGAACGGAGGGGTCGAGGCCTACTCCTTCGTGATTGAT
TGCAGTGGATTTTCACTTTCCAACATTCCCCCGGTCAATATCATCAAGCA
GACATTTACGCTGCTTCATCACCACTATCCTACCCGTGTGGGGTTTATTG
TCTTTTTGTACACAGGCTCGGCGTTCCAGTTGCTCTGGAAGGTGCTTACC
CCCTTGGTCAGCCCTATGACGAGAAACAAGATTTTGTTTGTCCCTGCAGG
GAAGGAGAAGAATGAATTGTTGAAAAGAGTGGAAGAAGAGCAGTTGGACG
AGAGATATGGAGGGCAGAGGGGCTTTTCATTTGTGCCGCATGAGTACTTT
GGGGTGAGTGAGGAGGAGGCGAAGAAGATGCATGAGAAGGAAGGGAAGAA
TGAAGTTAAGGGAGGGGGGAAGGACAAAGGGAGGGACGAGGGGAAGAGAG
GAAAGACATGTGGAGGGGGCGACAGCTAAACGCCCAAGTTGAGTCGTGAA
AGCAGGACAAGGGGGATGGGAGGGAAGAGGGAAAGAGGGAGGGGAGCTGA
AGGAAGTGGGATGAGAGATTGATTCTCTCTTGTGAGTTTAACTGTTCAAT
AGTCGAGTTTGTACAATTCAATTGTAGGGGAAATGTAGGTGCATGCAGAG
TGCGTAGGGGTAGTCCCCAGAGAGAGGGAGAGGGATGGCAATGATGGAAG
GGGAGGGGGGAGGTTGGTCATTGGCG back to topCoding sequence (CDS) from alignment at chr7:332239..336814- >NO07G01030.2 ID=NO07G01030.2|Name=NO07G01030.2|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr7:332239..336814- (Nannochloropsis oceanica) ATGCCCTATCGCAAGCTGGGACGGACGTCGTCCCATCGGTGGGCAATGCT CCGGAATATGGTCACATCCTTGGTGGAACACGAGCGCATTCGCACCACCA CAGCCAAGGCCAAGGAGCTCCGGCGGGTAGCGGACCGAATGGTTACCTGG GCAAAGGACGGTTCCCTGCACGCACGTCGACAAGCCGCCATGGTCATCCG CACCCGCGAGCACCTCAAAAAACTATTTGACGTTCTGGGCCCTCGATATC TCACACGAGCAGGCGGGTACACGCGTATTTTGAAGCTTCAGAGGTGGCGA CCTGGGGATGCTGCCGACATGAGCTTGATTGAGTTTGTTGCTCGGCCAGG AGAGTTAAGGCCGGCGCGGCCGCCACAACGACTACCAGCAGGGGAAACAA GAATGGCGTCGTCGTTGCAGGCGATGGCGGCTAATTCGAGCAAGGTTAAG GTCTCTCTTCCTACCTCGTCCTCACCCAAGAGATACAATCGCAACTACAA CTGCAGTAGATGCACATTTAGCACGACGGGGCCTACACGAAGCAAAAAGC ATTCTACTGGCCTGGCAGGAAGTGGAGTAGCGGGAGGGGCAAAAACAGAC CATCCCATACCCAGGGAGGCAAAGATGACGGTCACAAAGAAATCACTCTC CGTCCTCGTCCTCTGTACATTCGGTACCTTGTTGGCAGCCTTGAAGTACC ACCGGGGCGGGCCGACCACGCAAAGCGTCTTGCAATGGGGCAGCGACCGG CTTTTGTTGCTAGGCATAGGAGGGGAGAAGAAGGAAGCAGATGGGGCAGC AGGGCGGTTGTTGGCGATTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAAACACAGCTGTTCAAGAGGCGTTGCCT GATGACCGAGCCCTAATCCCCACCCGCGACCCCCACAAACGACTGAAACG CACCTTTTTCCTAGACGCCGGCAAGGCCGCCATGCAAGTCATCCATTTGC CTCTTAAAACCATCATGCTCGGAATCCAGAAGCTGCTCTCCCTTGGAAAA GGGGGAGGGAAGAAGGGAGGAAAGAAGCTGCAGCACCCGCAGCAGTCATC CTCTGCGACCAAGAGAGGAGTTTTGGACATGGCGTCGTTAACGGAGGAAG AATTGTTGTGGGTGGAAGAGGTGTATCAACCCCTTATTGCCATGCCCGGC ATCGCGGACCGGGGGCTTGCTGTCAAGATGCCCATCGACCGGGAGTGTGT CGCTCGATACTTTATCGCTGCCCAGTGGAAGCCGGCCATGAGGGGCCAGC CGACAGTGGACGCAATTTTACGCACTCTGAGATGGAGGGAGGATGAACGA GTAGCAGTGTTGGAACCAGAAGACGTACTAGCACAGGCCTGGGATGGCTA CCTGTACGTCAACGGCACGGACAGGATTGGGCGGCCGATGATTTATTTTA GACCGGCGTTTCAGGTAGGATCCTGTCGTCTCCCTCCTTCCTTCCCTCCC TCCCCGTATTCTTTTCCTCCGGTCTTCCTTGACCTGTTGTTGGCTGGGTA G back to top
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