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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:316873..317976 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00980.1 vs.
Match: EWM27293.1 (hypothetical protein Naga_100080g17 [Nannochloropsis gaditana]) HSP 1 Score: 65.5 bits (158), Expect = 4.000e-7 Identity = 67/167 (40.12%), Postives = 80/167 (47.90%), Query Frame = 0
Query: 183 GIATLSCSAPPCYPGDPSRGSGRGSGGYGPIRGGRGGGRGRPFRHHTPYANFPAQSSFP-PVSSRARSRG--RGGGKNMSLVLTPSSSGATKADVSASAPPTTASQVARGAANPSLISTASSFSSSSSSASSIPPSVTHNRSLIRNPVTGRMTHHKVWVRPTDVVEA 347
G LS APP PG SRG YGPI+GG+GG RG FR PY+ +S P P +RA RG G+ + P SS + A +SA PPT S A++PS NRSLIRNP TGR+THHKVWV P + EA
Sbjct: 374 GTTQLSPLAPPYQPG-ASRGE------YGPIQGGKGGRRGSTFRQ-VPYSLAGPSTSLPRPAPTRASLAWDKRGSGQ---FSIGPGSSMSGPARLSAWEPPTAIS-----ASSPS------------------------NRSLIRNPATGRLTHHKVWVNPGLLGEA 500
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00980.1 ID=NO07G00980.1|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp ATGCCACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCA ACGCGGCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACC ATAATCAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAA GATCGCAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCC CCTTCCTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTG AGCGGACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAA GGAAGACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGC GTTGGCAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAA AAGATGGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCT AGTATGGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTAC ACCATCACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAA TAGCCACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCC CGTGGCAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCG GGGTGGAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATT TTCCGGCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGT GGAAGGGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTC AGGGGCAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGT CACAAGTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCC TCGTTCTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGAC TCATAATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATC ACAAAGTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGA GGCACAGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAA GTAG back to topprotein sequence of NO07G00980.1 >NO07G00980.1-protein ID=NO07G00980.1-protein|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp MPQLQQLKRRTVTQHHQRGRSRSLSPEREQPHHHNQTQQQQQQQQRDRSE DRNVHFVKTVRNGATPPLPPSLMPPFNPSFSRSERTNEKLTVFRITGIVE GRREGAESGGGGMLKDALATVTSAAADTAARNGKDGGKDQNTSRSKGDAS SMEGISSSSSSFLSPFTPSPSSGDRGVIGAAAGIATLSCSAPPCYPGDPS RGSGRGSGGYGPIRGGRGGGRGRPFRHHTPYANFPAQSSFPPVSSRARSR GRGGGKNMSLVLTPSSSGATKADVSASAPPTTASQVARGAANPSLISTAS SFSSSSSSASSIPPSVTHNRSLIRNPVTGRMTHHKVWVRPTDVVEAAGTG GTGYAGGATTDTDGTTK* back to topmRNA from alignment at chr7:316873..317976- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00980.1 ID=NO07G00980.1|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp|location=Sequence derived from alignment at chr7:316873..317976- (Nannochloropsis oceanica) ATGCCACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCA
ACGCGGCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACC
ATAATCAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAA
GATCGCAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCC
CCTTCCTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTG
AGCGGACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAA
GGAAGACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGC
GTTGGCAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAA
AAGATGGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCT
AGTATGGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTAC
ACCATCACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAA
TAGCCACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCC
CGTGGCAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCG
GGGTGGAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATT
TTCCGGCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGT
GGAAGGGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTC
AGGGGCAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGT
CACAAGTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCC
TCGTTCTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGAC
TCATAATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATC
ACAAAGTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGA
GGCACAGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAA
GTAG back to topCoding sequence (CDS) from alignment at chr7:316873..317976- >NO07G00980.1 ID=NO07G00980.1|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr7:316873..317976- (Nannochloropsis oceanica) ATGCCACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCA ACGCGGCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACC ATAATCAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAA GATCGCAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCC CCTTCCTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTG AGCGGACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAA GGAAGACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGC GTTGGCAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAA AAGATGGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCT AGTATGGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTAC ACCATCACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAA TAGCCACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCC CGTGGCAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCG GGGTGGAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATT TTCCGGCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGT GGAAGGGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTC AGGGGCAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGT CACAAGTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCC TCGTTCTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGAC TCATAATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATC ACAAAGTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGA GGCACAGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAA GTAG back to top
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