NO07G00980.1, NO07G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00980.1
Unique NameNO07G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr7:316873..317976 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:316873..317976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00980.1 vs.
Match: EWM27293.1 (hypothetical protein Naga_100080g17 [Nannochloropsis gaditana])

HSP 1 Score: 65.5 bits (158), Expect = 4.000e-7
Identity = 67/167 (40.12%), Postives = 80/167 (47.90%), Query Frame = 0
Query:  183 GIATLSCSAPPCYPGDPSRGSGRGSGGYGPIRGGRGGGRGRPFRHHTPYANFPAQSSFP-PVSSRARSRG--RGGGKNMSLVLTPSSSGATKADVSASAPPTTASQVARGAANPSLISTASSFSSSSSSASSIPPSVTHNRSLIRNPVTGRMTHHKVWVRPTDVVEA 347
            G   LS  APP  PG  SRG       YGPI+GG+GG RG  FR   PY+     +S P P  +RA      RG G+     + P SS +  A +SA  PPT  S     A++PS                        NRSLIRNP TGR+THHKVWV P  + EA
Sbjct:  374 GTTQLSPLAPPYQPG-ASRGE------YGPIQGGKGGRRGSTFRQ-VPYSLAGPSTSLPRPAPTRASLAWDKRGSGQ---FSIGPGSSMSGPARLSAWEPPTAIS-----ASSPS------------------------NRSLIRNPATGRLTHHKVWVNPGLLGEA 500          
The following BLAST results are available for this feature:
BLAST of NO07G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27293.14.000e-740.12hypothetical protein Naga_100080g17 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00980NO07G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00980.1NO07G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00980.1.cds1NO07G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00980.1 ID=NO07G00980.1|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp
ATGCCACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCA
ACGCGGCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACC
ATAATCAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAA
GATCGCAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCC
CCTTCCTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTG
AGCGGACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAA
GGAAGACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGC
GTTGGCAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAA
AAGATGGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCT
AGTATGGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTAC
ACCATCACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAA
TAGCCACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCC
CGTGGCAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCG
GGGTGGAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATT
TTCCGGCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGT
GGAAGGGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTC
AGGGGCAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGT
CACAAGTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCC
TCGTTCTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGAC
TCATAATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATC
ACAAAGTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGA
GGCACAGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAA
GTAG
back to top

protein sequence of NO07G00980.1

>NO07G00980.1-protein ID=NO07G00980.1-protein|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MPQLQQLKRRTVTQHHQRGRSRSLSPEREQPHHHNQTQQQQQQQQRDRSE
DRNVHFVKTVRNGATPPLPPSLMPPFNPSFSRSERTNEKLTVFRITGIVE
GRREGAESGGGGMLKDALATVTSAAADTAARNGKDGGKDQNTSRSKGDAS
SMEGISSSSSSFLSPFTPSPSSGDRGVIGAAAGIATLSCSAPPCYPGDPS
RGSGRGSGGYGPIRGGRGGGRGRPFRHHTPYANFPAQSSFPPVSSRARSR
GRGGGKNMSLVLTPSSSGATKADVSASAPPTTASQVARGAANPSLISTAS
SFSSSSSSASSIPPSVTHNRSLIRNPVTGRMTHHKVWVRPTDVVEAAGTG
GTGYAGGATTDTDGTTK*
back to top

mRNA from alignment at chr7:316873..317976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00980.1 ID=NO07G00980.1|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp|location=Sequence derived from alignment at chr7:316873..317976- (Nannochloropsis oceanica)
ATGCCACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCA ACGCGGCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACC ATAATCAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAA GATCGCAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCC CCTTCCTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTG AGCGGACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAA GGAAGACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGC GTTGGCAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAA AAGATGGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCT AGTATGGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTAC ACCATCACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAA TAGCCACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCC CGTGGCAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCG GGGTGGAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATT TTCCGGCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGT GGAAGGGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTC AGGGGCAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGT CACAAGTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCC TCGTTCTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGAC TCATAATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATC ACAAAGTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGA GGCACAGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAA GTAG
back to top

Coding sequence (CDS) from alignment at chr7:316873..317976-

>NO07G00980.1 ID=NO07G00980.1|Name=NO07G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr7:316873..317976- (Nannochloropsis oceanica)
ATGCCACAGCTGCAGCAGCTGAAACGACGTACCGTCACACAACACCACCA
ACGCGGCCGGAGCCGGTCGCTGTCCCCAGAGCGGGAACAACCACATCACC
ATAATCAAACACAGCAACAGCAGCAGCAACAGCAGCGGGATAGATCTGAA
GATCGCAATGTCCATTTCGTGAAAACAGTGAGGAATGGGGCTACGCCTCC
CCTTCCTCCTTCTCTCATGCCCCCCTTCAATCCCTCCTTCTCCCGTAGTG
AGCGGACAAATGAGAAGCTCACTGTGTTCAGAATCACGGGAATCGTGGAA
GGAAGACGAGAGGGGGCGGAAAGTGGAGGGGGAGGGATGCTCAAGGACGC
GTTGGCAACAGTGACATCGGCAGCAGCAGATACAGCAGCACGAAATGGAA
AAGATGGAGGCAAGGATCAGAATACTAGTCGTAGTAAGGGTGATGCATCT
AGTATGGAGGGTATTTCTTCTTCATCTTCCTCCTTTCTCTCACCTTTTAC
ACCATCACCATCATCGGGAGACAGAGGAGTAATAGGAGCAGCGGCAGGAA
TAGCCACGCTTTCGTGTTCCGCCCCTCCGTGTTATCCCGGCGATCCTTCC
CGTGGCAGCGGTCGTGGCAGCGGTGGCTACGGACCGATAAGAGGAGGGCG
GGGTGGAGGACGAGGAAGACCTTTCCGTCATCATACCCCCTACGCCAATT
TTCCGGCACAGTCATCATTTCCTCCGGTGTCATCGAGGGCAAGGTCACGT
GGAAGGGGGGGAGGCAAAAACATGTCGCTAGTCCTCACGCCGTCTTCTTC
AGGGGCAACCAAAGCAGATGTCTCGGCATCTGCCCCCCCTACTACAGCGT
CACAAGTCGCAAGAGGAGCGGCCAATCCATCCCTAATTAGCACTGCCTCC
TCGTTCTCGTCCTCTTCCTCCTCCGCTTCCTCTATTCCTCCTTCAGTGAC
TCATAATCGCTCTCTAATTCGAAATCCGGTGACAGGGCGCATGACTCATC
ACAAAGTCTGGGTGCGGCCGACAGATGTCGTCGAGGCTGCAGGAACAGGA
GGCACAGGATACGCAGGGGGAGCTACCACAGATACGGACGGAACGACCAA
GTAG
back to top
Synonyms
Publications