NO07G00900.1, NO07G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00900.1
Unique NameNO07G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length333
Alignment locationchr7:290588..290920 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:290588..290920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00900.1 vs.
Match: EWM27276.1 (Ribosomal protein S27/S33, mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 191.4 bits (485), Expect = 1.500e-45
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0 
Query:    1 MSTGSKLGKIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIADKVVTYYPATINKIAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEGKRAQQAKKKK 111
            MSTG K+GKIVLGAAEV  LKEASRRIFG+LPQLN GKTGNKILRK LI DK+VTY+PATIN+IAH+EW+GYKTD+DIWRENRL RM+ RGNPPTKKGEGKRAQQAKKKK
Sbjct:   89 MSTGGKMGKIVLGAAEVAYLKEASRRIFGHLPQLNTGKTGNKILRKPLIGDKLVTYFPATINRIAHREWFGYKTDMDIWRENRLLRMHARGNPPTKKGEGKRAQQAKKKK 198
The following BLAST results are available for this feature:
BLAST of NO07G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27276.11.500e-4584.55Ribosomal protein S27/S33, mitochondrial [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00900NO07G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00900.1NO07G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00900.1.cds1NO07G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00900.1 ID=NO07G00900.1|Name=NO07G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGAGCACGGGCAGCAAGCTGGGTAAGATAGTCCTGGGCGCGGCCGAAGT
GACGGGCCTGAAGGAGGCCTCGCGCCGGATATTTGGCAACCTGCCTCAAT
TAAATATTGGCAAGACGGGCAACAAAATCCTTCGCAAGGCCTTGATTGCA
GACAAGGTGGTGACGTACTATCCCGCTACGATCAACAAGATTGCGCACAA
GGAGTGGTACGGGTACAAGACTGACCTAGACATTTGGCGGGAGAACAGAT
TGTCGCGGATGTACATGAGAGGCAACCCCCCCACTAAGAAGGGGGAGGGC
AAGCGAGCGCAGCAGGCCAAGAAGAAAAAGTAG
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protein sequence of NO07G00900.1

>NO07G00900.1-protein ID=NO07G00900.1-protein|Name=NO07G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MSTGSKLGKIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIA
DKVVTYYPATINKIAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEG
KRAQQAKKKK*
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mRNA from alignment at chr7:290588..290920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00900.1 ID=NO07G00900.1|Name=NO07G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=333bp|location=Sequence derived from alignment at chr7:290588..290920+ (Nannochloropsis oceanica)
ATGAGCACGGGCAGCAAGCTGGGTAAGATAGTCCTGGGCGCGGCCGAAGT
GACGGGCCTGAAGGAGGCCTCGCGCCGGATATTTGGCAACCTGCCTCAAT
TAAATATTGGCAAGACGGGCAACAAAATCCTTCGCAAGGCCTTGATTGCA
GACAAGGTGGTGACGTACTATCCCGCTACGATCAACAAGATTGCGCACAA
GGAGTGGTACGGGTACAAGACTGACCTAGACATTTGGCGGGAGAACAGAT
TGTCGCGGATGTACATGAGAGGCAACCCCCCCACTAAGAAGGGGGAGGGC
AAGCGAGCGCAGCAGGCCAAGAAGAAAAAGTAG
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Coding sequence (CDS) from alignment at chr7:290588..290920+

>NO07G00900.1 ID=NO07G00900.1|Name=NO07G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at chr7:290588..290920+ (Nannochloropsis oceanica)
ATGAGCACGGGCAGCAAGCTGGGTAAGATAGTCCTGGGCGCGGCCGAAGT
GACGGGCCTGAAGGAGGCCTCGCGCCGGATATTTGGCAACCTGCCTCAAT
TAAATATTGGCAAGACGGGCAACAAAATCCTTCGCAAGGCCTTGATTGCA
GACAAGGTGGTGACGTACTATCCCGCTACGATCAACAAGATTGCGCACAA
GGAGTGGTACGGGTACAAGACTGACCTAGACATTTGGCGGGAGAACAGAT
TGTCGCGGATGTACATGAGAGGCAACCCCCCCACTAAGAAGGGGGAGGGC
AAGCGAGCGCAGCAGGCCAAGAAGAAAAAGTAG
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Synonyms
Publications