NO07G00880.1, NO07G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00880.1
Unique NameNO07G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1358
Alignment locationchr7:288993..290484 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:288993..290484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00880.1 vs.
Match: EWM27287.1 (hypothetical protein Naga_100080g3 [Nannochloropsis gaditana])

HSP 1 Score: 207.6 bits (527), Expect = 5.500e-50
Identity = 103/161 (63.98%), Postives = 127/161 (78.88%), Query Frame = 0 
Query:  141 MPLVYSSLLLPGSRNQSPPAWPFCVGSFAFGFFAMGPYLALRSFQPSPGATPSNRMVARFVENKLPAALAFISSLYLVYLVVGGGGGGGGVGGLEAYLTLFRTQTLPHVSSLDLLILSVFVADPMREDMLRRGWYSGGKLAAFVSVPVVGPCLYLLLRPAL 302
            MP VY+SLLL GSR+Q PPAWPF + SFA GFFA+GPYLALR ++P P    ++  + R +E+KLPA LAF++SLYL +L+V G    GG    EAYL+LF +QTLPHVSSLDL +LS+FV DP+REDM+RR WYS G+L AFV++PVVGPCLYLLLRP L
Sbjct:    1 MPFVYTSLLLSGSRDQIPPAWPFTLASFALGFFALGPYLALRRYRPFPDTAHASPWLTRVMESKLPALLAFLASLYLAWLIVDGLVSAGG---REAYLSLFYSQTLPHVSSLDLGLLSLFVVDPLREDMVRRQWYSPGRLLAFVALPVVGPCLYLLLRPTL 158
The following BLAST results are available for this feature:
BLAST of NO07G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27287.15.500e-5063.98hypothetical protein Naga_100080g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00880NO07G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00880.1NO07G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00880.1.cds1NO07G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00880.1.cds2NO07G00880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00880.1 ID=NO07G00880.1|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp
GGTTGTGGTAGTTGTAGCGATGTGGGTGTCAGTCCATGTTGCAGGCGTGG
TACGCATTCGGAGACTATCTCCCTTCGATAGACACAAGATGATGACGCTC
GGTGACGTTCCGATCATCTGCCGACTCCACCTCAGACCTCCCTTTGGTGT
CCAAAGCCCACATATTGGACCGACCCAAAGCCTCAGCAAGCGAAAGCCAT
ACGACAAGAAGACCTTGAGCCACGATTGTGTTAACTAACAGGTCTTTGTC
CATTCGCTCCTCCCTCTTCACATACATACAATACAGGGAACACGTGACCT
TTCCTTACCTCCCCACCTTTACGTGCGCGCAAGCCGACCAGGATGAAGGC
TTCCTACCGCTTCTCAACGATTGTCTTGGTGGTGGCGGCGACACTCAGTT
TTGTGGCAAGCTTTCAACTTCCTTTTAGTAGCCGATCGGGTATCAGACCA
CTCGCGCTTTCGAGACGCACGGCCCCAATCCCTACCCACCATTACTCCTC
CCCTGTCCTGCGCGCCTCGTCCAGAGAAAGCACGCCTGGAGACGAAATAG
GCGAGAGCAACACTCCCGAAAGCCGGGGGCCTCGTACTCTTATCACAGCC
CTAGCTTGGGCTGGCTTTGTGGCTTACGCCTTCCTTTTGGCGCCCGGCAA
GGATCCCGCCTCCACGGCCCTTGATGCTCAACTCCTGAAGGACATCATTG
GCAACCCCTTTTCCCCAACCCTTCCCCCCATATTTCTTGCCATCTTCAAC
GCCTTGGGCCTCATGCCCCTCGTCTATTCCTCTCTCCTCCTCCCGGGCTC
TCGAAACCAATCTCCTCCGGCCTGGCCTTTTTGCGTCGGCTCGTTCGCTT
TTGGCTTCTTTGCCATGGGGCCATACCTCGCCTTGCGTAGCTTCCAGCCC
TCCCCTGGCGCCACGCCTTCGAACCGTATGGTGGCTCGTTTTGTCGAGAA
TAAGCTGCCAGCTGCTCTCGCATTCATTTCTTCCCTGTACTTGGTGTATT
TGGTCGTCGGGGGAGGAGGAGGAGGGGGAGGAGTGGGAGGGTTGGAGGCG
TACCTTACGCTATTCAGGACGCAGACATTGCCGCACGTGTCCTCTTTAGA
TTTGTTGATTTTGTCCGTATTCGTGGCGGATCCGATGAGAGAGGACATGC
TTAGGAGGGGTTGGTATAGCGGGGGAAAGCTGGCGGCGTTTGTGAGCGTG
CCGGTGGTAGGACCATGCCTGTATCTATTGCTACGGCCGGCGTTATCCGT
CGATGAGGAGGAGGAAGTGTGAATGAGAGAGGCGTCAAACATTAAGACCG
AGGAGGCGTGAGAAACTCTTGATGAAACGTGGGAAATCAATACGAATGCT
AACGCGCC
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protein sequence of NO07G00880.1

>NO07G00880.1-protein ID=NO07G00880.1-protein|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MKASYRFSTIVLVVAATLSFVASFQLPFSSRSGIRPLALSRRTAPIPTHH
YSSPVLRASSRESTPGDEIGESNTPESRGPRTLITALAWAGFVAYAFLLA
PGKDPASTALDAQLLKDIIGNPFSPTLPPIFLAIFNALGLMPLVYSSLLL
PGSRNQSPPAWPFCVGSFAFGFFAMGPYLALRSFQPSPGATPSNRMVARF
VENKLPAALAFISSLYLVYLVVGGGGGGGGVGGLEAYLTLFRTQTLPHVS
SLDLLILSVFVADPMREDMLRRGWYSGGKLAAFVSVPVVGPCLYLLLRPA
LSVDEEEEV*
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mRNA from alignment at chr7:288993..290484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00880.1 ID=NO07G00880.1|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at chr7:288993..290484- (Nannochloropsis oceanica)
GGTTGTGGTAGTTGTAGCGATGTGGGTGTCAGTCCATGTTGCAGGCGTGG
TACGCATTCGGAGACTATCTCCCTTCGATAGACACAAGATGATGACGCTC
GGTGACGTTCCGATCATCTGCCGACTCCACCTCAGACCTCCCTTTGGTGT
CCAAAGCCCACATATTGGACCGACCCAAAGCCTCAGCAAGCGAAAGCCAT
ACGACAAGAAGACCTTGAGCCACGATTGTGTTAACTAACAGGTCTTTGTC
CATTCGCTCCTCCCTCTTCACATACATACAATACAGGGAACACGTGACCT
TTCCTTACCTCCCCACCTTTACGTGCGCGCAAGCCGACCAGGATGAAGGC
TTCCTACCGCTTCTCAACGATTGTCTTGGTGGTGGCGGCGACACTCAGTT
TTGTGGCAAGCTTTCAACTTCCTTTTAGTAGCCGATCGGGTATCAGACCA
CTCGCGCTTTCGAGACGCACGGCCCCAATCCCTACCCACCATTACTCCTC
CCCTGTCCTGCGCGCCTCGTCCAGAGAAAGCACGCCTGGAGACGAAATAG
GCGAGAGCAACACTCCCGAAAGCCGGGGGCCTCGTACTCTTATCACAGCC
CTAGCTTGGGCTGGCTTTGTGGCTTACGCCTTCCTTTTGGCGCCCGGCAA
GGATCCCGCCTCCACGGCCCTTGATGCTCAACTCCTGAAGGTTAGTTTTC
CAAGCATGGTGCGAGTGCCTACTGTCAAAACATCTGTCAGTCTCCTACCG
TTTTACATCCGCCACTTATCAACGCTTTTCTCCCTCCTTGCCGCTCCATC
CTTGACAAATTTACCCTTTTTCAGGACATCATTGGCAACCCCTTTTCCCC
AACCCTTCCCCCCATATTTCTTGCCATCTTCAACGCCTTGGGCCTCATGC
CCCTCGTCTATTCCTCTCTCCTCCTCCCGGGCTCTCGAAACCAATCTCCT
CCGGCCTGGCCTTTTTGCGTCGGCTCGTTCGCTTTTGGCTTCTTTGCCAT
GGGGCCATACCTCGCCTTGCGTAGCTTCCAGCCCTCCCCTGGCGCCACGC
CTTCGAACCGTATGGTGGCTCGTTTTGTCGAGAATAAGCTGCCAGCTGCT
CTCGCATTCATTTCTTCCCTGTACTTGGTGTATTTGGTCGTCGGGGGAGG
AGGAGGAGGGGGAGGAGTGGGAGGGTTGGAGGCGTACCTTACGCTATTCA
GGACGCAGACATTGCCGCACGTGTCCTCTTTAGATTTGTTGATTTTGTCC
GTATTCGTGGCGGATCCGATGAGAGAGGACATGCTTAGGAGGGGTTGGTA
TAGCGGGGGAAAGCTGGCGGCGTTTGTGAGCGTGCCGGTGGTAGGACCAT
GCCTGTATCTATTGCTACGGCCGGCGTTATCCGTCGATGAGGAGGAGGAA
GTGTGAATGAGAGAGGCGTCAAACATTAAGACCGAGGAGGCGTGAGAAAC
TCTTGATGAAACGTGGGAAATCAATACGAATGCTAACGCGCC
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Coding sequence (CDS) from alignment at chr7:288993..290484-

>NO07G00880.1 ID=NO07G00880.1|Name=NO07G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr7:288993..290484- (Nannochloropsis oceanica)
ATGAAGGCTTCCTACCGCTTCTCAACGATTGTCTTGGTGGTGGCGGCGAC
ACTCAGTTTTGTGGCAAGCTTTCAACTTCCTTTTAGTAGCCGATCGGGTA
TCAGACCACTCGCGCTTTCGAGACGCACGGCCCCAATCCCTACCCACCAT
TACTCCTCCCCTGTCCTGCGCGCCTCGTCCAGAGAAAGCACGCCTGGAGA
CGAAATAGGCGAGAGCAACACTCCCGAAAGCCGGGGGCCTCGTACTCTTA
TCACAGCCCTAGCTTGGGCTGGCTTTGTGGCTTACGCCTTCCTTTTGGCG
CCCGGCAAGGATCCCGCCTCCACGGCCCTTGATGCTCAACTCCTGAAGGA
CATCATTGGCAACCCCTTTTCCCCAACCCTTCCCCCCATATTTCTTGCCA
TCTTCAACGCCTTGGGCCTCATGCCCCTCGTCTATTCCTCTCTCCTCCTC
CCGGGCTCTCGAAACCAATCTCCTCCGGCCTGGCCTTTTTGCGTCGGCTC
GTTCGCTTTTGGCTTCTTTGCCATGGGGCCATACCTCGCCTTGCGTAGCT
TCCAGCCCTCCCCTGGCGCCACGCCTTCGAACCGTATGGTGGCTCGTTTT
GTCGAGAATAAGCTGCCAGCTGCTCTCGCATTCATTTCTTCCCTGTACTT
GGTGTATTTGGTCGTCGGGGGAGGAGGAGGAGGGGGAGGAGTGGGAGGGT
TGGAGGCGTACCTTACGCTATTCAGGACGCAGACATTGCCGCACGTGTCC
TCTTTAGATTTGTTGATTTTGTCCGTATTCGTGGCGGATCCGATGAGAGA
GGACATGCTTAGGAGGGGTTGGTATAGCGGGGGAAAGCTGGCGGCGTTTG
TGAGCGTGCCGGTGGTAGGACCATGCCTGTATCTATTGCTACGGCCGGCG
TTATCCGTCGATGAGGAGGAGGAAGTGTGA
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Synonyms
Publications