NO07G00850.1, NO07G00850.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G00850.1
Unique Name	NO07G00850.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2272
Alignment location	chr7:282271..284542 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:282271..284542 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G00850.1 vs.
Match: EWM27346.1 (hypothetical protein Naga_100226g11 [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 3.900e-80
Identity = 192/381 (50.39%), Postives = 235/381 (61.68%), Query Frame = 0

Query:   13 RSRRPRKPNVTSST-----SVALPISTP-SLLLTQLNDDLLGRVFKMAGKWPETRTLCQATHLLTDRLVGGLIINPRVSLDVLKRLLARVGPGLRTLDLSGCAVLDDELLRHLIDHACPHLTHLSVNYCAQLTPAVTPFLFRVPHVALRGCWRLLSPSPSLPSDAVLELQLLALQQNDYHRHDGVAKHFEFASPANRAI------EEEGME---------GGSVEGGENVPADVQQQQQQQQQQQQQQQQQEEEEEEEREEDVDRQPLMDLQAFAGMVYERLQPMLGCHSFSMRQFQYESPDRACFLVRTTQGRKVTAGAAVGGTVGGGHGNHQHHQHYLWLLSRQAEGQLKDCWMTDAIVSAEHGLLSFLNLPLCAEDRG 373
            R+RR R  +  SS      + A  ++ P SLLLT+LNDDLL RV     +W   R++  +T   +D LV  L I P   L VL R++ RVG  +  LDL+G   L+D  LRH+++  CP L HL +NYC QLTPAV P L RVP VA+RGCWRLL+PSPSL SD VLELQLLALQQND HRHDGVAK+FEFAS ANR +      EEEG E         G S EG  ++             ++         EE        R PL+ L+AF  +VY+RLQP+LGC SFS+R+ QYES DRACFLVRTT  +  + G +   ++  G G     QHYLWLLSRQ EG+ K CW+TDAI+SAEHGLLS  NLPLC E RG
Sbjct:   45 RARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLVGPGQDGEEEGGEEEGEDTKGGGSSAEGRGSISRPGMSTGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAF-HVVYDRLQPLLGCQSFSIRRLQYESVDRACFLVRTTVKKVASTGTSASVSMAAGDG-FSRQQHYLWLLSRQKEGEWKKCWLTDAIISAEHGLLSLWNLPLCEEGRG 423

The following BLAST results are available for this feature:

BLAST of NO07G00850.1 vs.

BLAST of NO07G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27346.1	3.900e-80	50.39	hypothetical protein Naga_100226g11 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G00850	NO07G00850	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00850.1	NO07G00850.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00850.1.cds1	NO07G00850.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:282271..284542-
coding sequence from alignment at chr7:282271..284542-

mRNA sequence

>NO07G00850.1 ID=NO07G00850.1|Name=NO07G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2272bp
TCCTTGATTTACCCGTTTTGTATTCCTCTTTTCTGTCCTTTGCGGCAAAA
GGCAGGCATGATGAAAAGCTTTCAAAAGTGGATGTCTACTGCTGTTTCTT
CCTGGATTCCGTCGAGAGGTTCATGCTTCTGATGACGAAGCATACGTCGG
AGAGCGGAGAGATATCTCTTCCACTCTTTCTGACACGCACACACACATTC
AAGCCTGATTGGACAAAACAAAATGCACCAAAAAGCCTACCCCTACGGGC
ACCCCGTCGCTCTCACTCTCGCTAATTCAGTTTTGCGGCGGCGACGCGCG
TCGCGTCGATCCGAGAGCCTTCAGCGATCCTAACCCTAAAAGCGTGACGC
CGACATCACAACTACTTCCTGCTGTTTGCCGTGCATGCTTTCAAACAAAC
GAAAGCGCGGCGCCCCTTCCTTGTTCCACAGATTGGACGCCTACGTAGAA
GACGATGAGCTGGGAAGAAAGTTGTTGTCCGTCAATGCCTTGACCTGTCG
GCCTTTCAAACATCATGCACATATTTCCTGGCCTGGCAGACCTTGGCTCG
TCTGATAGCCGTCCTGCTGATGCTTGGCCCACAGCGTGTCAAGAGGATGG
CCAGGAAAAGAGAAAACACGAAACTTGTCTCCCTTGTTAGCTCTCCTGAC
ACTCACATAGCATGTCTCCTTACACATGTCTTCCACAGCTCACGCTCGTC
CTTTTTGGGGTGGTGTCTACATCTACATCAAAGAGGGGAAGAGGGGAGGA
GCAGCAGGCCCTCCCAAAAAAATAAATAGGACGGAGCAACAAACCGGCAG
CAGTACCCATCCTTACCGCACACTTTCGCCGCCATGTACAGCAGCAAGGT
GGCAGTGACGGCAAGGAAGCGTTCTCGCAGGCCACGCAAACCCAACGTCA
CCTCTTCTACCTCTGTCGCCCTCCCCATTTCCACACCCTCCCTTCTCCTG
ACGCAGCTCAATGACGACCTCTTGGGTCGCGTTTTCAAAATGGCAGGGAA
GTGGCCCGAAACGCGCACTCTTTGCCAAGCTACACACCTTCTCACAGATC
GTCTCGTGGGCGGGTTGATAATTAATCCTCGTGTTTCCCTCGATGTCCTT
AAGCGGCTCCTTGCACGTGTCGGGCCTGGTCTCCGCACACTCGATTTGTC
AGGATGTGCTGTTTTGGACGATGAACTCCTACGGCATCTTATCGACCACG
CCTGCCCGCATCTTACGCACCTCTCCGTTAATTACTGCGCCCAGTTGACC
CCGGCCGTGACTCCTTTCCTGTTCCGCGTGCCTCATGTGGCGCTAAGGGG
ATGTTGGCGTCTTTTAAGTCCCTCCCCTTCCCTCCCTTCCGACGCAGTAC
TAGAACTTCAATTGCTGGCATTGCAACAAAACGATTACCACCGTCACGAT
GGCGTGGCGAAGCATTTTGAATTTGCCTCGCCAGCAAACCGGGCGATTGA
GGAGGAGGGGATGGAGGGAGGGTCGGTCGAAGGAGGAGAGAATGTCCCTG
CGGACGTGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGGAGGAGGAGGAGGAAGAGGAGCGGGAGGAGGACGTCGATCG
ACAGCCATTGATGGACCTTCAGGCCTTCGCTGGAATGGTCTATGAGCGCC
TTCAACCAATGTTAGGGTGCCACTCCTTCTCCATGCGTCAATTCCAGTAC
GAGTCCCCCGATCGTGCCTGCTTTCTAGTCCGCACGACGCAAGGAAGAAA
AGTTACTGCTGGTGCTGCGGTTGGCGGCACTGTGGGGGGAGGCCATGGCA
ATCATCAGCATCACCAGCATTACCTGTGGTTGTTGTCGAGGCAAGCGGAA
GGTCAGTTGAAGGACTGCTGGATGACTGACGCCATCGTCTCGGCGGAGCA
CGGGTTGCTGAGTTTTTTAAACCTTCCCTTATGTGCTGAGGATAGGGGTG
GAAGAGGGATGGGGGGGCGGGGGGCACAGGCTGGTGGAGTGTGGTTGCAG
CAGTGCGCGGCCGGTGGGGCTGATGGCGTGGAGTAGGGGCAGCCGTAGAG
TAAATTGATTCGTGTGACGGAATCGTGAAAGAAAAATAGGGACGGTAGAG
AAGAAACGATTTCTATGAAATAAATTTTGATCGAATGAGGGGATGGTAGA
GTAAATTTTGACGAAGGGAGGGGAGGTCGGGGATCCGGTTGAGCGTACGT
TCCGCAATTTTGGAGAATTAGAAGCTAGCGGTTCAGGTGAAAACAAAGAA
AGACATGCCGTTGTAGCTATCT

protein sequence of NO07G00850.1

>NO07G00850.1-protein ID=NO07G00850.1-protein|Name=NO07G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MYSSKVAVTARKRSRRPRKPNVTSSTSVALPISTPSLLLTQLNDDLLGRV
FKMAGKWPETRTLCQATHLLTDRLVGGLIINPRVSLDVLKRLLARVGPGL
RTLDLSGCAVLDDELLRHLIDHACPHLTHLSVNYCAQLTPAVTPFLFRVP
HVALRGCWRLLSPSPSLPSDAVLELQLLALQQNDYHRHDGVAKHFEFASP
ANRAIEEEGMEGGSVEGGENVPADVQQQQQQQQQQQQQQQQQEEEEEEER
EEDVDRQPLMDLQAFAGMVYERLQPMLGCHSFSMRQFQYESPDRACFLVR
TTQGRKVTAGAAVGGTVGGGHGNHQHHQHYLWLLSRQAEGQLKDCWMTDA
IVSAEHGLLSFLNLPLCAEDRGGRGMGGRGAQAGGVWLQQCAAGGADGVE
*

mRNA from alignment at chr7:282271..284542-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G00850.1 ID=NO07G00850.1|Name=NO07G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2272bp|location=Sequence derived from alignment at chr7:282271..284542- (Nannochloropsis oceanica)
TCCTTGATTTACCCGTTTTGTATTCCTCTTTTCTGTCCTTTGCGGCAAAA
GGCAGGCATGATGAAAAGCTTTCAAAAGTGGATGTCTACTGCTGTTTCTT
CCTGGATTCCGTCGAGAGGTTCATGCTTCTGATGACGAAGCATACGTCGG
AGAGCGGAGAGATATCTCTTCCACTCTTTCTGACACGCACACACACATTC
AAGCCTGATTGGACAAAACAAAATGCACCAAAAAGCCTACCCCTACGGGC
ACCCCGTCGCTCTCACTCTCGCTAATTCAGTTTTGCGGCGGCGACGCGCG
TCGCGTCGATCCGAGAGCCTTCAGCGATCCTAACCCTAAAAGCGTGACGC
CGACATCACAACTACTTCCTGCTGTTTGCCGTGCATGCTTTCAAACAAAC
GAAAGCGCGGCGCCCCTTCCTTGTTCCACAGATTGGACGCCTACGTAGAA
GACGATGAGCTGGGAAGAAAGTTGTTGTCCGTCAATGCCTTGACCTGTCG
GCCTTTCAAACATCATGCACATATTTCCTGGCCTGGCAGACCTTGGCTCG
TCTGATAGCCGTCCTGCTGATGCTTGGCCCACAGCGTGTCAAGAGGATGG
CCAGGAAAAGAGAAAACACGAAACTTGTCTCCCTTGTTAGCTCTCCTGAC
ACTCACATAGCATGTCTCCTTACACATGTCTTCCACAGCTCACGCTCGTC
CTTTTTGGGGTGGTGTCTACATCTACATCAAAGAGGGGAAGAGGGGAGGA
GCAGCAGGCCCTCCCAAAAAAATAAATAGGACGGAGCAACAAACCGGCAG
CAGTACCCATCCTTACCGCACACTTTCGCCGCCATGTACAGCAGCAAGGT
GGCAGTGACGGCAAGGAAGCGTTCTCGCAGGCCACGCAAACCCAACGTCA
CCTCTTCTACCTCTGTCGCCCTCCCCATTTCCACACCCTCCCTTCTCCTG
ACGCAGCTCAATGACGACCTCTTGGGTCGCGTTTTCAAAATGGCAGGGAA
GTGGCCCGAAACGCGCACTCTTTGCCAAGCTACACACCTTCTCACAGATC
GTCTCGTGGGCGGGTTGATAATTAATCCTCGTGTTTCCCTCGATGTCCTT
AAGCGGCTCCTTGCACGTGTCGGGCCTGGTCTCCGCACACTCGATTTGTC
AGGATGTGCTGTTTTGGACGATGAACTCCTACGGCATCTTATCGACCACG
CCTGCCCGCATCTTACGCACCTCTCCGTTAATTACTGCGCCCAGTTGACC
CCGGCCGTGACTCCTTTCCTGTTCCGCGTGCCTCATGTGGCGCTAAGGGG
ATGTTGGCGTCTTTTAAGTCCCTCCCCTTCCCTCCCTTCCGACGCAGTAC
TAGAACTTCAATTGCTGGCATTGCAACAAAACGATTACCACCGTCACGAT
GGCGTGGCGAAGCATTTTGAATTTGCCTCGCCAGCAAACCGGGCGATTGA
GGAGGAGGGGATGGAGGGAGGGTCGGTCGAAGGAGGAGAGAATGTCCCTG
CGGACGTGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGGAGGAGGAGGAGGAAGAGGAGCGGGAGGAGGACGTCGATCG
ACAGCCATTGATGGACCTTCAGGCCTTCGCTGGAATGGTCTATGAGCGCC
TTCAACCAATGTTAGGGTGCCACTCCTTCTCCATGCGTCAATTCCAGTAC
GAGTCCCCCGATCGTGCCTGCTTTCTAGTCCGCACGACGCAAGGAAGAAA
AGTTACTGCTGGTGCTGCGGTTGGCGGCACTGTGGGGGGAGGCCATGGCA
ATCATCAGCATCACCAGCATTACCTGTGGTTGTTGTCGAGGCAAGCGGAA
GGTCAGTTGAAGGACTGCTGGATGACTGACGCCATCGTCTCGGCGGAGCA
CGGGTTGCTGAGTTTTTTAAACCTTCCCTTATGTGCTGAGGATAGGGGTG
GAAGAGGGATGGGGGGGCGGGGGGCACAGGCTGGTGGAGTGTGGTTGCAG
CAGTGCGCGGCCGGTGGGGCTGATGGCGTGGAGTAGGGGCAGCCGTAGAG
TAAATTGATTCGTGTGACGGAATCGTGAAAGAAAAATAGGGACGGTAGAG
AAGAAACGATTTCTATGAAATAAATTTTGATCGAATGAGGGGATGGTAGA
GTAAATTTTGACGAAGGGAGGGGAGGTCGGGGATCCGGTTGAGCGTACGT
TCCGCAATTTTGGAGAATTAGAAGCTAGCGGTTCAGGTGAAAACAAAGAA
AGACATGCCGTTGTAGCTATCT

Coding sequence (CDS) from alignment at chr7:282271..284542-

>NO07G00850.1 ID=NO07G00850.1|Name=NO07G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr7:282271..284542- (Nannochloropsis oceanica)
ATGTACAGCAGCAAGGTGGCAGTGACGGCAAGGAAGCGTTCTCGCAGGCC
ACGCAAACCCAACGTCACCTCTTCTACCTCTGTCGCCCTCCCCATTTCCA
CACCCTCCCTTCTCCTGACGCAGCTCAATGACGACCTCTTGGGTCGCGTT
TTCAAAATGGCAGGGAAGTGGCCCGAAACGCGCACTCTTTGCCAAGCTAC
ACACCTTCTCACAGATCGTCTCGTGGGCGGGTTGATAATTAATCCTCGTG
TTTCCCTCGATGTCCTTAAGCGGCTCCTTGCACGTGTCGGGCCTGGTCTC
CGCACACTCGATTTGTCAGGATGTGCTGTTTTGGACGATGAACTCCTACG
GCATCTTATCGACCACGCCTGCCCGCATCTTACGCACCTCTCCGTTAATT
ACTGCGCCCAGTTGACCCCGGCCGTGACTCCTTTCCTGTTCCGCGTGCCT
CATGTGGCGCTAAGGGGATGTTGGCGTCTTTTAAGTCCCTCCCCTTCCCT
CCCTTCCGACGCAGTACTAGAACTTCAATTGCTGGCATTGCAACAAAACG
ATTACCACCGTCACGATGGCGTGGCGAAGCATTTTGAATTTGCCTCGCCA
GCAAACCGGGCGATTGAGGAGGAGGGGATGGAGGGAGGGTCGGTCGAAGG
AGGAGAGAATGTCCCTGCGGACGTGCAACAGCAACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAAGAGGAGCGG
GAGGAGGACGTCGATCGACAGCCATTGATGGACCTTCAGGCCTTCGCTGG
AATGGTCTATGAGCGCCTTCAACCAATGTTAGGGTGCCACTCCTTCTCCA
TGCGTCAATTCCAGTACGAGTCCCCCGATCGTGCCTGCTTTCTAGTCCGC
ACGACGCAAGGAAGAAAAGTTACTGCTGGTGCTGCGGTTGGCGGCACTGT
GGGGGGAGGCCATGGCAATCATCAGCATCACCAGCATTACCTGTGGTTGT
TGTCGAGGCAAGCGGAAGGTCAGTTGAAGGACTGCTGGATGACTGACGCC
ATCGTCTCGGCGGAGCACGGGTTGCTGAGTTTTTTAAACCTTCCCTTATG
TGCTGAGGATAGGGGTGGAAGAGGGATGGGGGGGCGGGGGGCACAGGCTG
GTGGAGTGTGGTTGCAGCAGTGCGCGGCCGGTGGGGCTGATGGCGTGGAG
TAG

Synonyms

Publications