NO07G00810.1, NO07G00810.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G00810.1
Unique Name	NO07G00810.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2591
Alignment location	chr7:272731..275321 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:272731..275321 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G00810.1 vs.
Match: XP_005855063.1 (hypothetical protein NGA_0353800 [Nannochloropsis gaditana CCMP526]; EKU21299.1 hypothetical protein NGA_0353800 [Nannochloropsis gaditana CCMP526]; EWM27344.1 hypothetical protein Naga_100226g15 [Nannochloropsis gaditana])

HSP 1 Score: 112.5 bits (280), Expect = 4.400e-21
Identity = 164/500 (32.80%), Postives = 227/500 (45.40%), Query Frame = 0

Query:    5 EPEGSEGLGLAAPNPPAFDNQTPQQGPPSSLVKPGVAQNHLLLKSVPSLTRVPSAGGILDALSLLSSPRSSPRGPRSKSPLPARPTSSPRSNATTISNSSVACLTLPSRLSPTMPSVFRSTGEALPDKLMITNPSSPSAFALSSPPSLSRGLSASPMVGDLHLIKEEENEDQSECSRSRRSSTAIGSSTSSTSSASSSSSSSPAVIISSGTRSDSSSCISFPLPLQISSLSSGEAAAVAAGRGSTSPNHKQRVAHDSFQETTQAGGLIFIPQPALAENNNGDLDQCQASFSLISPLLPSSPCCSSTSAVHEGLVFTPEEKKEC-FKVAETKKQQLDLPSDTFAQNIPETITANEAPNDGFRAKVGLKVEEEGVIVP--EENGKEGRKKREGGKEKSQNVWDRLYKSQTTSPGKKERQQKEHEARF----TFQPALATAAAAGGR--EGGRGRRSPTISPKSATSSSSSSSSNSSGSGSHSKKGVHDRLYAEGKNRLQRLE 496
            EP  + G      +P A       + PP +  +       L LKS+PSL+R PSA G L+AL+LLSSPRSSP GPRS+SPLP RPTSSPR+ + + S      L LP+ +SPT  S  RS+   LPD+L+I  PSS     LSSP   SR L+ASP+VG+LH IKEEENED SE  RSR SS A       ++S +S  S  P+++++SG    S +  S P  L + + SSG A++   G  +TS    +  A+    +   AG       PA  E    +    Q + + +               V E L      + EC  K AE K +Q +  S +FA   P  +T     +   R        E     P   E   +G +KR    EK++               K++ +++ H   F       P    AAAAG R   G  G     +  +  T   +      S S    ++  H R+  E K   QR E
Sbjct:    4 EPSSALGTSAGRGSPSAAGIDAQPESPPRTTTR---LPESLALKSLPSLSRTPSASGTLEALALLSSPRSSPGGPRSRSPLPPRPTSSPRNASGSPS------LPLPTFMSPTASSTNRSSLTGLPDQLVIHGPSS-----LSSPS--SRVLNASPIVGELHKIKEEENEDHSESGRSRNSSAA-------STSLASGRSRDPSIVMASGQEIQSQN--SSPSVLAVPT-SSGSASSTHLGAATTSHTSPKAKANGDVFDRLFAGRPSRPSTPAERETLTAE-HTFQPNLAKVEKDRHKGMERREDGLVFERLYKQGVGQAECRLKAAEIKAKQ-ESASCSFA---PRLVTEE---HKRLRGSPSPPAPEHAADSPPVHERLYKGLEKRLDYFEKAE---------------KRKSEKETHGCTFIPAILKTPVAMKAAAAGLRAETGEAGEAKEGVGRQEETEEKAGEGKKESASKKVWERLYHARVPLEAKKARQRQE 454

The following BLAST results are available for this feature:

BLAST of NO07G00810.1 vs.

BLAST of NO07G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855063.1	4.400e-21	32.80	hypothetical protein NGA_0353800 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G00810	NO07G00810	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00810.1	NO07G00810.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00810.1.cds1	NO07G00810.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:272731..275321-
coding sequence from alignment at chr7:272731..275321-

mRNA sequence

>NO07G00810.1 ID=NO07G00810.1|Name=NO07G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp
GCTAACGCTTTTTCGAATGGCAAACGGCTCCTCAAAATATTGCACCTTTT
TTGCCCCTTGACACCATAAAGTCGTCTAGAATAAACCACAAGGAACATTC
ACATCAGTGTGATCGAACTCTTGGCCAATTTACGAACAAATTCTGTGCCA
GGTAAAAAAAAATGCTCACCTACCATGGCACACTTGGTCCCCCCACCTGC
TCTCGCGAAGGCGCGAGTGTCGACTCCGAGTCCGCATCCCTCGCACACAA
TTTGTTCGGTGGGCAAACTTCTATGCATCAATGCCATAGACAAACTTTCG
ATTCAAAGACACATAACCATGCTGAACCATCTAGGCATTGTGCCACAAGT
GTTTTTTGATTGACCTAATCACTCTGTTCCTTCCTTCCTTCCTTCTCTCA
CTTATCCCAGCATCCAGTACAATACCACAGAATTCAAGGCGCTTCCTTTC
TTCCTTTCATTTAATTGCGCGCGCACGCGTTCATGGACCGCCCAGAGCCC
GAAGGGTCAGAGGGGTTGGGGCTTGCCGCTCCGAATCCTCCCGCCTTTGA
CAACCAGACGCCGCAGCAAGGGCCGCCTTCGTCCCTTGTTAAGCCCGGTG
TCGCCCAAAACCATCTTCTGCTCAAGTCTGTGCCTAGTCTGACGCGTGTA
CCTTCTGCAGGCGGCATCCTTGATGCATTATCCTTGTTGTCTTCCCCGCG
CTCCTCGCCTCGGGGGCCTCGCTCCAAATCTCCCTTGCCAGCTCGTCCAA
CATCTTCACCACGAAGCAATGCCACCACCATAAGCAACTCAAGCGTCGCT
TGTCTGACTTTGCCTTCACGTCTGAGCCCTACCATGCCCTCCGTATTTCG
TTCCACTGGGGAGGCCTTGCCTGATAAGCTGATGATCACCAACCCATCTT
CGCCCTCTGCATTCGCCTTATCCTCCCCCCCGTCTTTATCGCGAGGTCTG
AGCGCCTCTCCCATGGTTGGCGACCTCCACCTAATCAAAGAAGAAGAGAA
CGAGGATCAAAGCGAATGCAGCCGTTCCCGTCGTTCCAGCACGGCCATTG
GCAGCAGTACCAGCAGTACCAGCAGTGCCAGCAGCAGCAGCAGCAGCAGC
CCCGCCGTCATCATCAGCAGTGGGACGCGGAGCGACTCCTCCTCCTGCAT
CTCCTTCCCTCTACCTCTGCAGATTTCATCTCTGTCCAGCGGAGAAGCAG
CAGCCGTAGCCGCAGGACGAGGGAGCACCTCCCCCAACCATAAGCAGCGG
GTCGCTCATGATTCCTTCCAGGAAACCACGCAAGCGGGAGGCCTTATTTT
CATCCCTCAACCCGCCCTCGCTGAAAATAATAATGGTGACCTGGACCAAT
GCCAGGCCTCTTTCTCTCTCATTTCCCCCCTTCTTCCCTCATCCCCCTGC
TGCTCCTCCACTTCAGCCGTCCATGAAGGGCTTGTCTTTACCCCGGAAGA
GAAGAAAGAGTGTTTCAAGGTAGCAGAAACCAAGAAGCAGCAGCTCGACC
TGCCTAGCGATACGTTCGCCCAAAATATTCCTGAGACGATCACCGCCAAT
GAGGCGCCTAACGATGGGTTTAGGGCTAAGGTGGGCTTAAAGGTCGAGGA
GGAGGGGGTAATTGTGCCTGAGGAGAATGGGAAGGAGGGACGGAAGAAGA
GGGAGGGAGGGAAGGAAAAGTCCCAAAATGTCTGGGATCGGCTGTACAAG
AGTCAAACAACCTCACCGGGGAAGAAGGAGAGGCAACAGAAAGAGCATGA
AGCTCGCTTCACCTTCCAACCCGCACTTGCTACTGCTGCTGCCGCGGGTG
GGAGAGAGGGAGGGCGCGGGCGACGCAGCCCTACCATAAGTCCAAAGAGC
GCCACCAGCAGCAGTAGCAGTAGCAGCAGCAACAGCAGCGGCAGCGGCAG
CCATAGTAAAAAGGGTGTCCATGACAGGTTGTACGCGGAGGGGAAAAACC
GTTTGCAACGGTTAGAGGAACGGCTCGCGAAACCCCCACAGGGCTGTACA
TTCCACCCCATATTTAATGGATCGCCCGGCGGAAGGGTTGCTGCTGCTAC
TGATGCTGCCGCTGCTGCTGCTAGTAAAATTACTGAAGAAGGGGAGGGGG
GAAAGAATGGAGGGTCGACCCGTGGGGAGGGGAAGTATTTGCATGGTAAG
GAGAAGGTGGGGGGAATCTAAACGAAGGACATTGAAAACGTTGCGTCCTC
CGAGCCTTAAATCGGAAGCAGAGAATTACGCCTTTCAACCGCAGATGAAC
TTGAAGAAATGATTCTAAGAAAGGAAGGAAGGGTCTGAGGAAGAGAGAAA
AGTATGTAAAGGGATATCAATTCTGATTTATACGTTGATGCATCTGAGAC
TAAGAACAAGGGGTGTTATTTTTGGTTGATAGAGAGTCACAAAGTGGAAG
ACGGGAAGCAGTGGAAGAAGGATGAGGAGGACAAGGAGGAGGGAAAATTT
TAAAAACAGAGGGAGATCAACAACCACAACCACATCCTCAACAATTTCTA
GGACAACAAACAGGGCAAATCATAAGACCAATGCGTGTGCGAATCACATG
TTTTATATTTAAATTTCAATAAATGATATAATACGATGAAT

protein sequence of NO07G00810.1

>NO07G00810.1-protein ID=NO07G00810.1-protein|Name=NO07G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MDRPEPEGSEGLGLAAPNPPAFDNQTPQQGPPSSLVKPGVAQNHLLLKSV
PSLTRVPSAGGILDALSLLSSPRSSPRGPRSKSPLPARPTSSPRSNATTI
SNSSVACLTLPSRLSPTMPSVFRSTGEALPDKLMITNPSSPSAFALSSPP
SLSRGLSASPMVGDLHLIKEEENEDQSECSRSRRSSTAIGSSTSSTSSAS
SSSSSSPAVIISSGTRSDSSSCISFPLPLQISSLSSGEAAAVAAGRGSTS
PNHKQRVAHDSFQETTQAGGLIFIPQPALAENNNGDLDQCQASFSLISPL
LPSSPCCSSTSAVHEGLVFTPEEKKECFKVAETKKQQLDLPSDTFAQNIP
ETITANEAPNDGFRAKVGLKVEEEGVIVPEENGKEGRKKREGGKEKSQNV
WDRLYKSQTTSPGKKERQQKEHEARFTFQPALATAAAAGGREGGRGRRSP
TISPKSATSSSSSSSSNSSGSGSHSKKGVHDRLYAEGKNRLQRLEERLAK
PPQGCTFHPIFNGSPGGRVAAATDAAAAAASKITEEGEGGKNGGSTRGEG
KYLHGKEKVGGI*

mRNA from alignment at chr7:272731..275321-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G00810.1 ID=NO07G00810.1|Name=NO07G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp|location=Sequence derived from alignment at chr7:272731..275321- (Nannochloropsis oceanica)
GCTAACGCTTTTTCGAATGGCAAACGGCTCCTCAAAATATTGCACCTTTT
TTGCCCCTTGACACCATAAAGTCGTCTAGAATAAACCACAAGGAACATTC
ACATCAGTGTGATCGAACTCTTGGCCAATTTACGAACAAATTCTGTGCCA
GGTAAAAAAAAATGCTCACCTACCATGGCACACTTGGTCCCCCCACCTGC
TCTCGCGAAGGCGCGAGTGTCGACTCCGAGTCCGCATCCCTCGCACACAA
TTTGTTCGGTGGGCAAACTTCTATGCATCAATGCCATAGACAAACTTTCG
ATTCAAAGACACATAACCATGCTGAACCATCTAGGCATTGTGCCACAAGT
GTTTTTTGATTGACCTAATCACTCTGTTCCTTCCTTCCTTCCTTCTCTCA
CTTATCCCAGCATCCAGTACAATACCACAGAATTCAAGGCGCTTCCTTTC
TTCCTTTCATTTAATTGCGCGCGCACGCGTTCATGGACCGCCCAGAGCCC
GAAGGGTCAGAGGGGTTGGGGCTTGCCGCTCCGAATCCTCCCGCCTTTGA
CAACCAGACGCCGCAGCAAGGGCCGCCTTCGTCCCTTGTTAAGCCCGGTG
TCGCCCAAAACCATCTTCTGCTCAAGTCTGTGCCTAGTCTGACGCGTGTA
CCTTCTGCAGGCGGCATCCTTGATGCATTATCCTTGTTGTCTTCCCCGCG
CTCCTCGCCTCGGGGGCCTCGCTCCAAATCTCCCTTGCCAGCTCGTCCAA
CATCTTCACCACGAAGCAATGCCACCACCATAAGCAACTCAAGCGTCGCT
TGTCTGACTTTGCCTTCACGTCTGAGCCCTACCATGCCCTCCGTATTTCG
TTCCACTGGGGAGGCCTTGCCTGATAAGCTGATGATCACCAACCCATCTT
CGCCCTCTGCATTCGCCTTATCCTCCCCCCCGTCTTTATCGCGAGGTCTG
AGCGCCTCTCCCATGGTTGGCGACCTCCACCTAATCAAAGAAGAAGAGAA
CGAGGATCAAAGCGAATGCAGCCGTTCCCGTCGTTCCAGCACGGCCATTG
GCAGCAGTACCAGCAGTACCAGCAGTGCCAGCAGCAGCAGCAGCAGCAGC
CCCGCCGTCATCATCAGCAGTGGGACGCGGAGCGACTCCTCCTCCTGCAT
CTCCTTCCCTCTACCTCTGCAGATTTCATCTCTGTCCAGCGGAGAAGCAG
CAGCCGTAGCCGCAGGACGAGGGAGCACCTCCCCCAACCATAAGCAGCGG
GTCGCTCATGATTCCTTCCAGGAAACCACGCAAGCGGGAGGCCTTATTTT
CATCCCTCAACCCGCCCTCGCTGAAAATAATAATGGTGACCTGGACCAAT
GCCAGGCCTCTTTCTCTCTCATTTCCCCCCTTCTTCCCTCATCCCCCTGC
TGCTCCTCCACTTCAGCCGTCCATGAAGGGCTTGTCTTTACCCCGGAAGA
GAAGAAAGAGTGTTTCAAGGTAGCAGAAACCAAGAAGCAGCAGCTCGACC
TGCCTAGCGATACGTTCGCCCAAAATATTCCTGAGACGATCACCGCCAAT
GAGGCGCCTAACGATGGGTTTAGGGCTAAGGTGGGCTTAAAGGTCGAGGA
GGAGGGGGTAATTGTGCCTGAGGAGAATGGGAAGGAGGGACGGAAGAAGA
GGGAGGGAGGGAAGGAAAAGTCCCAAAATGTCTGGGATCGGCTGTACAAG
AGTCAAACAACCTCACCGGGGAAGAAGGAGAGGCAACAGAAAGAGCATGA
AGCTCGCTTCACCTTCCAACCCGCACTTGCTACTGCTGCTGCCGCGGGTG
GGAGAGAGGGAGGGCGCGGGCGACGCAGCCCTACCATAAGTCCAAAGAGC
GCCACCAGCAGCAGTAGCAGTAGCAGCAGCAACAGCAGCGGCAGCGGCAG
CCATAGTAAAAAGGGTGTCCATGACAGGTTGTACGCGGAGGGGAAAAACC
GTTTGCAACGGTTAGAGGAACGGCTCGCGAAACCCCCACAGGGCTGTACA
TTCCACCCCATATTTAATGGATCGCCCGGCGGAAGGGTTGCTGCTGCTAC
TGATGCTGCCGCTGCTGCTGCTAGTAAAATTACTGAAGAAGGGGAGGGGG
GAAAGAATGGAGGGTCGACCCGTGGGGAGGGGAAGTATTTGCATGGTAAG
GAGAAGGTGGGGGGAATCTAAACGAAGGACATTGAAAACGTTGCGTCCTC
CGAGCCTTAAATCGGAAGCAGAGAATTACGCCTTTCAACCGCAGATGAAC
TTGAAGAAATGATTCTAAGAAAGGAAGGAAGGGTCTGAGGAAGAGAGAAA
AGTATGTAAAGGGATATCAATTCTGATTTATACGTTGATGCATCTGAGAC
TAAGAACAAGGGGTGTTATTTTTGGTTGATAGAGAGTCACAAAGTGGAAG
ACGGGAAGCAGTGGAAGAAGGATGAGGAGGACAAGGAGGAGGGAAAATTT
TAAAAACAGAGGGAGATCAACAACCACAACCACATCCTCAACAATTTCTA
GGACAACAAACAGGGCAAATCATAAGACCAATGCGTGTGCGAATCACATG
TTTTATATTTAAATTTCAATAAATGATATAATACGATGAAT

Coding sequence (CDS) from alignment at chr7:272731..275321-

>NO07G00810.1 ID=NO07G00810.1|Name=NO07G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr7:272731..275321- (Nannochloropsis oceanica)
ATGGACCGCCCAGAGCCCGAAGGGTCAGAGGGGTTGGGGCTTGCCGCTCC
GAATCCTCCCGCCTTTGACAACCAGACGCCGCAGCAAGGGCCGCCTTCGT
CCCTTGTTAAGCCCGGTGTCGCCCAAAACCATCTTCTGCTCAAGTCTGTG
CCTAGTCTGACGCGTGTACCTTCTGCAGGCGGCATCCTTGATGCATTATC
CTTGTTGTCTTCCCCGCGCTCCTCGCCTCGGGGGCCTCGCTCCAAATCTC
CCTTGCCAGCTCGTCCAACATCTTCACCACGAAGCAATGCCACCACCATA
AGCAACTCAAGCGTCGCTTGTCTGACTTTGCCTTCACGTCTGAGCCCTAC
CATGCCCTCCGTATTTCGTTCCACTGGGGAGGCCTTGCCTGATAAGCTGA
TGATCACCAACCCATCTTCGCCCTCTGCATTCGCCTTATCCTCCCCCCCG
TCTTTATCGCGAGGTCTGAGCGCCTCTCCCATGGTTGGCGACCTCCACCT
AATCAAAGAAGAAGAGAACGAGGATCAAAGCGAATGCAGCCGTTCCCGTC
GTTCCAGCACGGCCATTGGCAGCAGTACCAGCAGTACCAGCAGTGCCAGC
AGCAGCAGCAGCAGCAGCCCCGCCGTCATCATCAGCAGTGGGACGCGGAG
CGACTCCTCCTCCTGCATCTCCTTCCCTCTACCTCTGCAGATTTCATCTC
TGTCCAGCGGAGAAGCAGCAGCCGTAGCCGCAGGACGAGGGAGCACCTCC
CCCAACCATAAGCAGCGGGTCGCTCATGATTCCTTCCAGGAAACCACGCA
AGCGGGAGGCCTTATTTTCATCCCTCAACCCGCCCTCGCTGAAAATAATA
ATGGTGACCTGGACCAATGCCAGGCCTCTTTCTCTCTCATTTCCCCCCTT
CTTCCCTCATCCCCCTGCTGCTCCTCCACTTCAGCCGTCCATGAAGGGCT
TGTCTTTACCCCGGAAGAGAAGAAAGAGTGTTTCAAGGTAGCAGAAACCA
AGAAGCAGCAGCTCGACCTGCCTAGCGATACGTTCGCCCAAAATATTCCT
GAGACGATCACCGCCAATGAGGCGCCTAACGATGGGTTTAGGGCTAAGGT
GGGCTTAAAGGTCGAGGAGGAGGGGGTAATTGTGCCTGAGGAGAATGGGA
AGGAGGGACGGAAGAAGAGGGAGGGAGGGAAGGAAAAGTCCCAAAATGTC
TGGGATCGGCTGTACAAGAGTCAAACAACCTCACCGGGGAAGAAGGAGAG
GCAACAGAAAGAGCATGAAGCTCGCTTCACCTTCCAACCCGCACTTGCTA
CTGCTGCTGCCGCGGGTGGGAGAGAGGGAGGGCGCGGGCGACGCAGCCCT
ACCATAAGTCCAAAGAGCGCCACCAGCAGCAGTAGCAGTAGCAGCAGCAA
CAGCAGCGGCAGCGGCAGCCATAGTAAAAAGGGTGTCCATGACAGGTTGT
ACGCGGAGGGGAAAAACCGTTTGCAACGGTTAGAGGAACGGCTCGCGAAA
CCCCCACAGGGCTGTACATTCCACCCCATATTTAATGGATCGCCCGGCGG
AAGGGTTGCTGCTGCTACTGATGCTGCCGCTGCTGCTGCTAGTAAAATTA
CTGAAGAAGGGGAGGGGGGAAAGAATGGAGGGTCGACCCGTGGGGAGGGG
AAGTATTTGCATGGTAAGGAGAAGGTGGGGGGAATCTAA

Synonyms

Publications