NO07G00790.1, NO07G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00790.1
Unique NameNO07G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1477
Alignment locationchr7:267632..269108 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:267632..269108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00790.1 vs.
Match: EWM27335.1 (hypothetical protein Naga_101019g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 328.6 bits (841), Expect = 2.900e-86
Identity = 210/401 (52.37%), Postives = 263/401 (65.59%), Query Frame = 0 
Query:    1 MPRRTGQRS--SGSSDDAGSNGQVLRLQQQIRDGETYEALQTTRALFARME------RSGKRGGGGEARAILLKVASTLAEAGEFKSALDLARLYMTNNKRENGSTAAAGGGGAAASGNRVEELSAKEARETAAIPSSSLSKTETEEEDHPSWIPHRFATGGRVAMLSLARMLPQGSKERVSLLKGITRWAVEEQKQQQLEEGEEEEEGLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGARERLAASYVGLLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTAAAASSSLGSSLAPSPLAHYVSLLLDLLEA-------DGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQALMNSMMG 387
            MPRRTG+RS  +G+  D+ +     RLQ+ I+DGETYEALQT RALFAR++       +  R  G EAR ++L VA TLAE GE++S LDLARLYM NN          G      +  +VEE+SA+EA   +    +  +  E  E D P+W  HRF TGGR AMLSLAR+LP  SKERV+LLKG+TRWA EE+   + EEG +E   L LGLELA+AY   G++A+AA +H +LA        G   + LAASYV +LE WS +GY GEKDLF+ARA +H L +S  +    A+ FARAL+TAA ASS+    L  SPL HYV L++ LL A       +GG+EGGKEGE+F+LLSSRYQP LRRDP  EK VGRI E GFGL P  NPMQA ++SM+G
Sbjct:    1 MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMANNASLRKQAMPTGH-----TVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEE---EAEEGGKEV--LELGLELAKAYSARGEWARAAQQHGELARQCT----GPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVL-GALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
The following BLAST results are available for this feature:
BLAST of NO07G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27335.12.900e-8652.37hypothetical protein Naga_101019g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00790NO07G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00790.1NO07G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00790.1.cds1NO07G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00790.1 ID=NO07G00790.1|Name=NO07G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
ATGCCTCGTCGAACCGGTCAACGCAGCAGTGGTAGCAGCGATGATGCTGG
GTCGAATGGACAGGTCTTGCGCTTGCAACAGCAGATTAGGGATGGGGAGA
CCTACGAGGCTCTCCAGACGACACGGGCTCTCTTTGCCCGGATGGAACGC
AGTGGCAAACGTGGAGGCGGAGGGGAGGCACGTGCGATCCTTTTGAAAGT
GGCCAGTACACTGGCCGAGGCGGGGGAGTTCAAGTCGGCCTTGGATTTGG
CGCGTTTGTACATGACGAATAATAAGAGGGAAAATGGTTCGACTGCTGCT
GCTGGTGGTGGTGGTGCCGCTGCGAGCGGTAATCGAGTAGAAGAATTGAG
TGCCAAAGAAGCTAGAGAAACTGCCGCCATACCTTCTTCTTCCTTATCAA
AAACGGAAACAGAAGAGGAGGATCACCCTTCCTGGATACCCCATCGCTTT
GCAACGGGGGGACGGGTGGCCATGTTGTCACTTGCGCGGATGCTGCCACA
AGGATCGAAGGAACGTGTGTCGTTGCTAAAAGGCATCACGCGGTGGGCCG
TGGAGGAACAGAAGCAGCAGCAGCTGGAGGAAGGTGAGGAAGAAGAGGAG
GGTTTGGCGCTGGGGTTGGAGCTTGCGGAGGCCTACAAAGATTATGGAGA
CTATGCACAGGCGGCTTTGAAGCACGCGCAACTTGCCTTGGGCTTGAAGG
AGGGAGGGAGGGGGGGAGCGAGGGAGAGACTGGCGGCATCGTATGTGGGG
TTACTGGAGCATTGGAGCGAGGACGGGTACAAGGGGGAGAAAGACTTGTT
TGTAGCTCGAGCAGCTATGCACGTCCTGGCATCTTCCCCCCCTTCCTCCT
TCAAGAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTGCTGCTGCCGCC
TCCTCCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTGGCGCATTACGT
GTCTTTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAAGGAAGGAGGGA
AGGAGGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACCAGCCTGTGTTG
AGGCGGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATAGCAGAGGTGGG
TTTTGGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTTGATGAATAGTA
TGATGGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGATGGGCAGTTTG
CTTGGGAACATGCTGGGGGGAGGGGCGGGGGGAGGAGGGGGGTTATTGGG
GCAATTGGGCGGATTGGGATTCTAGAAGGAGAAGGACTGAGTGGGAGGGA
GGGAGGGACGGTCGAAGGCAAAGAGGCCTGGTTTCCCAGCAACAGCAAGA
AAGGAGATATCGTAGATAATGTGCGTGCATGATTCTGCTTTCTCGTCACA
CTGGTTTCTGTGTCATCTATTGCTTGCTCCTATTTTATTCATTTAAAGAG
ACTCCGTGAAATGCCAAACAATTACTT
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protein sequence of NO07G00790.1

>NO07G00790.1-protein ID=NO07G00790.1-protein|Name=NO07G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MPRRTGQRSSGSSDDAGSNGQVLRLQQQIRDGETYEALQTTRALFARMER
SGKRGGGGEARAILLKVASTLAEAGEFKSALDLARLYMTNNKRENGSTAA
AGGGGAAASGNRVEELSAKEARETAAIPSSSLSKTETEEEDHPSWIPHRF
ATGGRVAMLSLARMLPQGSKERVSLLKGITRWAVEEQKQQQLEEGEEEEE
GLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGARERLAASYVG
LLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTAAAA
SSSLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVL
RRDPLFEKWVGRIAEVGFGLLPPVNPMQALMNSMMGGLGGGGGGAGMGSL
LGNMLGGGAGGGGGLLGQLGGLGF*
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mRNA from alignment at chr7:267632..269108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00790.1 ID=NO07G00790.1|Name=NO07G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp|location=Sequence derived from alignment at chr7:267632..269108- (Nannochloropsis oceanica)
ATGCCTCGTCGAACCGGTCAACGCAGCAGTGGTAGCAGCGATGATGCTGG
GTCGAATGGACAGGTCTTGCGCTTGCAACAGCAGATTAGGGATGGGGAGA
CCTACGAGGCTCTCCAGACGACACGGGCTCTCTTTGCCCGGATGGAACGC
AGTGGCAAACGTGGAGGCGGAGGGGAGGCACGTGCGATCCTTTTGAAAGT
GGCCAGTACACTGGCCGAGGCGGGGGAGTTCAAGTCGGCCTTGGATTTGG
CGCGTTTGTACATGACGAATAATAAGAGGGAAAATGGTTCGACTGCTGCT
GCTGGTGGTGGTGGTGCCGCTGCGAGCGGTAATCGAGTAGAAGAATTGAG
TGCCAAAGAAGCTAGAGAAACTGCCGCCATACCTTCTTCTTCCTTATCAA
AAACGGAAACAGAAGAGGAGGATCACCCTTCCTGGATACCCCATCGCTTT
GCAACGGGGGGACGGGTGGCCATGTTGTCACTTGCGCGGATGCTGCCACA
AGGATCGAAGGAACGTGTGTCGTTGCTAAAAGGCATCACGCGGTGGGCCG
TGGAGGAACAGAAGCAGCAGCAGCTGGAGGAAGGTGAGGAAGAAGAGGAG
GGTTTGGCGCTGGGGTTGGAGCTTGCGGAGGCCTACAAAGATTATGGAGA
CTATGCACAGGCGGCTTTGAAGCACGCGCAACTTGCCTTGGGCTTGAAGG
AGGGAGGGAGGGGGGGAGCGAGGGAGAGACTGGCGGCATCGTATGTGGGG
TTACTGGAGCATTGGAGCGAGGACGGGTACAAGGGGGAGAAAGACTTGTT
TGTAGCTCGAGCAGCTATGCACGTCCTGGCATCTTCCCCCCCTTCCTCCT
TCAAGAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTGCTGCTGCCGCC
TCCTCCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTGGCGCATTACGT
GTCTTTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAAGGAAGGAGGGA
AGGAGGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACCAGCCTGTGTTG
AGGCGGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATAGCAGAGGTGGG
TTTTGGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTTGATGAATAGTA
TGATGGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGATGGGCAGTTTG
CTTGGGAACATGCTGGGGGGAGGGGCGGGGGGAGGAGGGGGGTTATTGGG
GCAATTGGGCGGATTGGGATTCTAGAAGGAGAAGGACTGAGTGGGAGGGA
GGGAGGGACGGTCGAAGGCAAAGAGGCCTGGTTTCCCAGCAACAGCAAGA
AAGGAGATATCGTAGATAATGTGCGTGCATGATTCTGCTTTCTCGTCACA
CTGGTTTCTGTGTCATCTATTGCTTGCTCCTATTTTATTCATTTAAAGAG
ACTCCGTGAAATGCCAAACAATTACTT
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Coding sequence (CDS) from alignment at chr7:267632..269108-

>NO07G00790.1 ID=NO07G00790.1|Name=NO07G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr7:267632..269108- (Nannochloropsis oceanica)
ATGCCTCGTCGAACCGGTCAACGCAGCAGTGGTAGCAGCGATGATGCTGG
GTCGAATGGACAGGTCTTGCGCTTGCAACAGCAGATTAGGGATGGGGAGA
CCTACGAGGCTCTCCAGACGACACGGGCTCTCTTTGCCCGGATGGAACGC
AGTGGCAAACGTGGAGGCGGAGGGGAGGCACGTGCGATCCTTTTGAAAGT
GGCCAGTACACTGGCCGAGGCGGGGGAGTTCAAGTCGGCCTTGGATTTGG
CGCGTTTGTACATGACGAATAATAAGAGGGAAAATGGTTCGACTGCTGCT
GCTGGTGGTGGTGGTGCCGCTGCGAGCGGTAATCGAGTAGAAGAATTGAG
TGCCAAAGAAGCTAGAGAAACTGCCGCCATACCTTCTTCTTCCTTATCAA
AAACGGAAACAGAAGAGGAGGATCACCCTTCCTGGATACCCCATCGCTTT
GCAACGGGGGGACGGGTGGCCATGTTGTCACTTGCGCGGATGCTGCCACA
AGGATCGAAGGAACGTGTGTCGTTGCTAAAAGGCATCACGCGGTGGGCCG
TGGAGGAACAGAAGCAGCAGCAGCTGGAGGAAGGTGAGGAAGAAGAGGAG
GGTTTGGCGCTGGGGTTGGAGCTTGCGGAGGCCTACAAAGATTATGGAGA
CTATGCACAGGCGGCTTTGAAGCACGCGCAACTTGCCTTGGGCTTGAAGG
AGGGAGGGAGGGGGGGAGCGAGGGAGAGACTGGCGGCATCGTATGTGGGG
TTACTGGAGCATTGGAGCGAGGACGGGTACAAGGGGGAGAAAGACTTGTT
TGTAGCTCGAGCAGCTATGCACGTCCTGGCATCTTCCCCCCCTTCCTCCT
TCAAGAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTGCTGCTGCCGCC
TCCTCCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTGGCGCATTACGT
GTCTTTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAAGGAAGGAGGGA
AGGAGGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACCAGCCTGTGTTG
AGGCGGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATAGCAGAGGTGGG
TTTTGGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTTGATGAATAGTA
TGATGGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGATGGGCAGTTTG
CTTGGGAACATGCTGGGGGGAGGGGCGGGGGGAGGAGGGGGGTTATTGGG
GCAATTGGGCGGATTGGGATTCTAG
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Synonyms
Publications