NO07G00730.1, NO07G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00730.1
Unique NameNO07G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2040
Alignment locationchr7:252558..254819 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:252558..254819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00730.1 vs.
Match: EWM27329.1 (mcm family protein [Nannochloropsis gaditana])

HSP 1 Score: 1000.0 bits (2584), Expect = 3.600e-288
Identity = 546/687 (79.48%), Postives = 592/687 (86.17%), Query Frame = 0 
Query:    1 MRELNPEDVDHLVALRGMVIRCSTIIPELHLGCFRCFMCGFEVVVENDRGRIEEPSRCENCQARDAMELLANRCAYTNKQIVRMQETPDEIPEGETPNSLTLFAFDDLTDAVRPGDRIEVTGILRAAPRRVHPRLTTVRSVYKTHVEALHFSHIDKDLKVETGPGEGTRTTAAATAATASAGRGAGGGMGASTTGSDTSRMRGLHLPLARVKEIKELSKHPLIYEKLAQAVAPSIWEMDDVKKGVLCLLFGGTDKKAGARKERKGREREARRREKREEREERGRWRRRRREALD--------EEEKGGREERKAKLTTEATASRGATWMKTEWRGRRRGKQRRRIWLLSILAPRGIYTSGKGSSAVGLTASVIRDAETKELVLESGALVLSDQGVCCIDEFDKMSETTRAILHEAMEQQTVSIAKAGIICTLNARTSILASANPVDSRYNPKLSVVENIRLPPTLLSRFDLIYLILDNPDEDKDRRLARHLVSLYYQEPAVEAPDVNHSLLKDYIAYARAHVFPVLSEEAGEELVQGYLGLRGSGGEGKTITATPRQLESLIRLSEALAKIRLATVVEKRDVTEAMRLMNEATLKAATDPETGQLDLGNIDGTSRDREARQQLAAAVKEYLMARKGQRMSVSEIRHGMQAQSSVEVKQGLLVDVLRKELEPEGVVKYLQATHTVVIQ 680
            MR LNPEDVDHLVALRGMVIRCSTIIPELHLGCFRCFMCGFEV+VENDRGRIEEP RCE+CQA++AMELL NRCAYTNKQI+RMQETPDEIPEGETPNSLTLFAFD+LTDAVRPGDR+EVTGILRAAPRRVHPRLTT+RSVYKTHVEALHFSH+DKD+KVE GPGEGT  +  A         G G G+G  TTG DT+RMRGLHLP +RV EIK LS+ P IYEKL++AVAPSIW M+DVKKGVLCLLFGGTDKKAGARKER+G ER A RRE RE     GR   R   A +        +  +G  EE +      A + RG   +     G     + + +  +  LAPRGIYTSGKGSSAVGLTASVIRD ETKELVLESGALVLSDQGVCCIDEFDKMSETTRAILHEAMEQQTVSIAKAGIICTLNARTSILASANPVDSRYNP+LSVVENI+LPPTLLSRFDLIYL+LD+PDEDKDRRLARHL+SLYY+EPAVEAPDV+H+LLKDYIAYARAHVFPVLSEEAGE+L+QGYLGLRGSGGEGKTITATPRQLESLIRLSEALAKIRLA+VVE+ DV EAMRLM EATLKAATDPETG+LDLGNIDGTSRDREARQ L AAVKE+L  RKG RMSVSEIR G+QAQS+VEVKQGLLVDVLRKELEPEGVVKYL ATHTV+IQ
Sbjct:    1 MRNLNPEDVDHLVALRGMVIRCSTIIPELHLGCFRCFMCGFEVLVENDRGRIEEPVRCEHCQAKEAMELLTNRCAYTNKQIIRMQETPDEIPEGETPNSLTLFAFDELTDAVRPGDRVEVTGILRAAPRRVHPRLTTLRSVYKTHVEALHFSHVDKDMKVEAGPGEGTGRSGLA--------GGDGEGVGVGTTGCDTTRMRGLHLPASRVAEIKALSQDPWIYEKLSRAVAPSIWGMEDVKKGVLCLLFGGTDKKAGARKERRGWERRAGRRE-REGGRAGGRAGGRAGLAPEGTGPGMNGDRREGEEEEEEEAEDPGAVSCRGD--INILLCGDPGTSKSQILLYVHNLAPRGIYTSGKGSSAVGLTASVIRDVETKELVLESGALVLSDQGVCCIDEFDKMSETTRAILHEAMEQQTVSIAKAGIICTLNARTSILASANPVDSRYNPRLSVVENIQLPPTLLSRFDLIYLVLDSPDEDKDRRLARHLISLYYEEPAVEAPDVDHALLKDYIAYARAHVFPVLSEEAGEQLIQGYLGLRGSGGEGKTITATPRQLESLIRLSEALAKIRLASVVERSDVVEAMRLMAEATLKAATDPETGKLDLGNIDGTSRDREARQLLTAAVKEFLEPRKGLRMSVSEIRQGVQAQSTVEVKQGLLVDVLRKELEPEGVVKYLPATHTVLIQ 676
The following BLAST results are available for this feature:
BLAST of NO07G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27329.13.600e-28879.48mcm family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00730NO07G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00730.1NO07G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00730.1.cds1NO07G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00730.1.cds2NO07G00730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00730.1.cds3NO07G00730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00730.1 ID=NO07G00730.1|Name=NO07G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp
ATGAGGGAGCTGAACCCGGAGGACGTGGATCATTTGGTGGCGTTGCGAGG
GATGGTGATCCGTTGCAGCACGATCATCCCCGAGCTGCACTTGGGCTGTT
TCCGATGCTTCATGTGTGGCTTCGAGGTGGTAGTGGAGAACGACAGGGGG
AGGATCGAGGAGCCGTCCCGGTGCGAAAACTGCCAGGCACGGGACGCGAT
GGAGTTGCTGGCCAACCGATGTGCGTACACCAACAAGCAGATCGTGCGGA
TGCAGGAGACCCCCGACGAAATCCCGGAGGGAGAAACACCCAATTCACTC
ACCCTCTTTGCCTTCGACGACTTGACCGACGCCGTGCGACCAGGAGATCG
GATCGAAGTGACGGGTATATTGCGAGCGGCTCCTCGGCGCGTTCACCCCC
GGCTCACCACCGTCCGCAGCGTTTACAAAACCCACGTGGAAGCCTTGCAC
TTCTCCCACATCGACAAAGACCTCAAGGTAGAAACGGGCCCGGGGGAAGG
CACCCGCACTACGGCAGCAGCAACAGCAGCAACAGCATCAGCAGGAAGAG
GAGCGGGAGGGGGCATGGGGGCGAGTACAACCGGCAGTGATACCTCCCGC
ATGCGTGGCTTGCACCTCCCCCTGGCGCGTGTGAAGGAGATCAAAGAGCT
GTCGAAGCATCCATTGATATACGAGAAGCTGGCCCAGGCAGTGGCGCCGT
CGATCTGGGAGATGGATGACGTGAAGAAGGGGGTATTGTGTCTTTTATTT
GGAGGCACCGATAAGAAGGCGGGAGCCAGGAAGGAGCGAAAGGGGAGGGA
GAGGGAGGCACGGAGGAGGGAAAAGAGGGAAGAGAGGGAAGAGAGGGGGA
GGTGGAGGAGGAGGAGGAGGGAGGCGTTGGATGAGGAGGAGAAGGGGGGG
AGAGAGGAGAGGAAGGCCAAGCTGACGACGGAAGCAACAGCGAGCAGGGG
AGCGACATGGATGAAGACGGAGTGGAGGGGGAGACGGAGGGGGAAGCAGA
GGAGGAGGATCTGGCTGCTGTCAATTCTTGCCCCGCGTGGGATCTACACC
TCGGGAAAAGGCTCTTCGGCCGTTGGGTTGACGGCCTCGGTCATCCGGGA
TGCGGAGACAAAGGAGCTGGTGCTGGAGAGTGGGGCCCTGGTGTTGAGCG
ACCAAGGAGTTTGTTGCATTGATGAGTTTGACAAGATGAGCGAGACTACG
CGGGCCATCCTCCACGAGGCCATGGAACAACAAACCGTGTCCATCGCCAA
GGCCGGCATCATCTGCACCTTGAACGCGCGGACGTCGATTCTGGCATCGG
CGAACCCGGTGGACAGTAGGTATAACCCCAAGCTGTCGGTGGTGGAAAAT
ATCCGGCTGCCCCCCACATTGTTGTCAAGGTTTGATTTAATTTACCTTAT
TTTAGACAACCCGGATGAGGATAAGGATAGGAGGTTGGCCCGACATTTGG
TGAGCCTTTATTACCAGGAGCCGGCGGTGGAGGCGCCGGACGTGAACCAC
TCCCTCCTTAAGGATTATATTGCCTATGCCCGCGCCCATGTATTTCCTGT
CCTGAGCGAGGAAGCGGGCGAAGAACTGGTGCAGGGCTATCTAGGGTTAA
GGGGGAGTGGGGGGGAAGGGAAGACGATCACCGCGACCCCTCGTCAATTG
GAGAGCCTGATTCGTTTGTCGGAGGCACTAGCAAAGATACGCTTGGCGAC
AGTTGTAGAGAAGAGGGATGTGACGGAGGCGATGAGGCTGATGAACGAGG
CTACGTTGAAGGCAGCCACCGACCCGGAGACAGGACAACTGGACCTGGGG
AACATCGATGGAACGAGCAGGGACCGTGAAGCACGGCAGCAATTGGCGGC
GGCGGTGAAGGAGTACTTGATGGCGAGAAAGGGGCAGAGGATGAGTGTAA
GTGAGATACGGCATGGCATGCAGGCACAAAGCTCGGTGGAAGTGAAGCAG
GGATTGTTGGTGGATGTGTTGAGAAAAGAGCTGGAACCGGAGGGGGTAGT
GAAGTATTTGCAGGCCACACACACGGTGGTCATCCAGTAA
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protein sequence of NO07G00730.1

>NO07G00730.1-protein ID=NO07G00730.1-protein|Name=NO07G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MRELNPEDVDHLVALRGMVIRCSTIIPELHLGCFRCFMCGFEVVVENDRG
RIEEPSRCENCQARDAMELLANRCAYTNKQIVRMQETPDEIPEGETPNSL
TLFAFDDLTDAVRPGDRIEVTGILRAAPRRVHPRLTTVRSVYKTHVEALH
FSHIDKDLKVETGPGEGTRTTAAATAATASAGRGAGGGMGASTTGSDTSR
MRGLHLPLARVKEIKELSKHPLIYEKLAQAVAPSIWEMDDVKKGVLCLLF
GGTDKKAGARKERKGREREARRREKREEREERGRWRRRRREALDEEEKGG
REERKAKLTTEATASRGATWMKTEWRGRRRGKQRRRIWLLSILAPRGIYT
SGKGSSAVGLTASVIRDAETKELVLESGALVLSDQGVCCIDEFDKMSETT
RAILHEAMEQQTVSIAKAGIICTLNARTSILASANPVDSRYNPKLSVVEN
IRLPPTLLSRFDLIYLILDNPDEDKDRRLARHLVSLYYQEPAVEAPDVNH
SLLKDYIAYARAHVFPVLSEEAGEELVQGYLGLRGSGGEGKTITATPRQL
ESLIRLSEALAKIRLATVVEKRDVTEAMRLMNEATLKAATDPETGQLDLG
NIDGTSRDREARQQLAAAVKEYLMARKGQRMSVSEIRHGMQAQSSVEVKQ
GLLVDVLRKELEPEGVVKYLQATHTVVIQ*
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mRNA from alignment at chr7:252558..254819+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00730.1 ID=NO07G00730.1|Name=NO07G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2262bp|location=Sequence derived from alignment at chr7:252558..254819+ (Nannochloropsis oceanica)
ATGAGGGAGCTGAACCCGGAGGACGTGGATCATTTGGTGGCGTTGCGAGG
GATGGTGATCCGTTGCAGCACGATCATCCCCGAGCTGCACTTGGGCTGTT
TCCGATGCTTCATGTGTGGCTTCGAGGTGGTAGTGGAGAACGACAGGGGG
AGGATCGAGGAGCCGTCCCGGTGCGAAAACTGCCAGGCACGGGACGCGAT
GGAGTTGCTGGCCAACCGATGTGCGTACACCAACAAGCAGATCGTGCGGA
TGCAGGAGACCCCCGACGAAATCCCGGAGGGAGAAACACCCAATTCACTC
ACCCTCTTTGCCTTCGACGACTTGACCGACGCCGTGCGACCAGGAGATCG
GATCGAAGTGACGGGTATATTGCGAGCGGCTCCTCGGCGCGTTCACCCCC
GGCTCACCACCGTCCGCAGCGTTTACAAAACCCACGTGGAAGCCTTGCAC
TTCTCCCACATCGACAAAGACCTCAAGGTAGAAACGGGCCCGGGGGAAGG
CACCCGCACTACGGCAGCAGCAACAGCAGCAACAGCATCAGCAGGAAGAG
GAGCGGGAGGGGGCATGGGGGCGAGTACAACCGGCAGTGATACCTCCCGC
ATGCGTGGCTTGCACCTCCCCCTGGCGCGTGTGAAGGAGATCAAAGAGCT
GTCGAAGCATCCATTGATATACGAGAAGCTGGCCCAGGCAGTGGCGCCGT
CGATCTGGGAGATGGATGACGTGAAGAAGGGGGTATTGTGTCTTTTATTT
GGAGGCACCGATAAGAAGGCGGGAGCCAGGAAGGAGCGAAAGGGGAGGGA
GAGGGAGGCACGGAGGAGGGAAAAGAGGGAAGAGAGGGAAGAGAGGGGGA
GGTGGAGGAGGAGGAGGAGGGAGGCGTTGGATGAGGAGGAGAAGGGGGGG
AGAGAGGAGAGGAAGGCCAAGCTGACGACGGAAGCAACAGCGAGCAGGGG
AGCGACATGGATGAAGACGGAGTGGAGGGGGAGACGGAGGGGGAAGCAGA
GGAGGAGGATCTGGCTGCTGTCAATTGTAGGGGCGACATTAATATATTGC
TGTGTGGAGATCCGGGTACAAGTAAATCACAAATTTTGCTTTATGTGCAT
AAGCTTGCCCCGCGTGGGATCTACACCTCGGGAAAAGGCTCTTCGGCCGT
TGGGTTGACGGCCTCGGTCATCCGGGATGCGGAGACAAAGGAGCTGGTGC
TGGAGAGTGGGGCCCTGGTGTTGAGCGACCAAGGAGTTTGTTGCATTGAT
GAGTTTGACAAGATGAGCGAGACTACGCGGGCCATCCTCCACGAGGCCAT
GGAACAACAAACCGTGTCCATCGCCAAGGCCGGCATCATCTGCACCTTGA
ACGCGCGGACGTCGATTCTGGCATCGGCGAACCCGGTGGACAGTAGGTAT
AACCCCAAGCTGTCGGTGGTGGAAAATATCCGGCTGCCCCCCACATTGTT
GTCAAGGTTTGATTTAATTTACCTTATTTTAGACAACCCGGATGAGGATA
AGGATAGGAGGTTGGCCCGACATTTGGTGAGCCTTTATTACCAGGAGCCG
GCGGTGGAGGTACGTGTCTTTGTCCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTTCCCCCCCTCTTCCCGTGTTGTTATCAGATTCACATGTGTCACTC
ATTCCTCCCTTCCTCCCCTCCCTCTCTTCCCTTCCTCTCTCCCTTCCCTC
GCAGGCGCCGGACGTGAACCACTCCCTCCTTAAGGATTATATTGCCTATG
CCCGCGCCCATGTATTTCCTGTCCTGAGCGAGGAAGCGGGCGAAGAACTG
GTGCAGGGCTATCTAGGGTTAAGGGGGAGTGGGGGGGAAGGGAAGACGAT
CACCGCGACCCCTCGTCAATTGGAGAGCCTGATTCGTTTGTCGGAGGCAC
TAGCAAAGATACGCTTGGCGACAGTTGTAGAGAAGAGGGATGTGACGGAG
GCGATGAGGCTGATGAACGAGGCTACGTTGAAGGCAGCCACCGACCCGGA
GACAGGACAACTGGACCTGGGGAACATCGATGGAACGAGCAGGGACCGTG
AAGCACGGCAGCAATTGGCGGCGGCGGTGAAGGAGTACTTGATGGCGAGA
AAGGGGCAGAGGATGAGTGTAAGTGAGATACGGCATGGCATGCAGGCACA
AAGCTCGGTGGAAGTGAAGCAGGGATTGTTGGTGGATGTGTTGAGAAAAG
AGCTGGAACCGGAGGGGGTAGTGAAGTATTTGCAGGCCACACACACGGTG
GTCATCCAGTAA
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Coding sequence (CDS) from alignment at chr7:252558..254819+

>NO07G00730.1 ID=NO07G00730.1|Name=NO07G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr7:252558..254819+ (Nannochloropsis oceanica)
ATGAGGGAGCTGAACCCGGAGGACGTGGATCATTTGGTGGCGTTGCGAGG
GATGGTGATCCGTTGCAGCACGATCATCCCCGAGCTGCACTTGGGCTGTT
TCCGATGCTTCATGTGTGGCTTCGAGGTGGTAGTGGAGAACGACAGGGGG
AGGATCGAGGAGCCGTCCCGGTGCGAAAACTGCCAGGCACGGGACGCGAT
GGAGTTGCTGGCCAACCGATGTGCGTACACCAACAAGCAGATCGTGCGGA
TGCAGGAGACCCCCGACGAAATCCCGGAGGGAGAAACACCCAATTCACTC
ACCCTCTTTGCCTTCGACGACTTGACCGACGCCGTGCGACCAGGAGATCG
GATCGAAGTGACGGGTATATTGCGAGCGGCTCCTCGGCGCGTTCACCCCC
GGCTCACCACCGTCCGCAGCGTTTACAAAACCCACGTGGAAGCCTTGCAC
TTCTCCCACATCGACAAAGACCTCAAGGTAGAAACGGGCCCGGGGGAAGG
CACCCGCACTACGGCAGCAGCAACAGCAGCAACAGCATCAGCAGGAAGAG
GAGCGGGAGGGGGCATGGGGGCGAGTACAACCGGCAGTGATACCTCCCGC
ATGCGTGGCTTGCACCTCCCCCTGGCGCGTGTGAAGGAGATCAAAGAGCT
GTCGAAGCATCCATTGATATACGAGAAGCTGGCCCAGGCAGTGGCGCCGT
CGATCTGGGAGATGGATGACGTGAAGAAGGGGGTATTGTGTCTTTTATTT
GGAGGCACCGATAAGAAGGCGGGAGCCAGGAAGGAGCGAAAGGGGAGGGA
GAGGGAGGCACGGAGGAGGGAAAAGAGGGAAGAGAGGGAAGAGAGGGGGA
GGTGGAGGAGGAGGAGGAGGGAGGCGTTGGATGAGGAGGAGAAGGGGGGG
AGAGAGGAGAGGAAGGCCAAGCTGACGACGGAAGCAACAGCGAGCAGGGG
AGCGACATGGATGAAGACGGAGTGGAGGGGGAGACGGAGGGGGAAGCAGA
GGAGGAGGATCTGGCTGCTGTCAATTCTTGCCCCGCGTGGGATCTACACC
TCGGGAAAAGGCTCTTCGGCCGTTGGGTTGACGGCCTCGGTCATCCGGGA
TGCGGAGACAAAGGAGCTGGTGCTGGAGAGTGGGGCCCTGGTGTTGAGCG
ACCAAGGAGTTTGTTGCATTGATGAGTTTGACAAGATGAGCGAGACTACG
CGGGCCATCCTCCACGAGGCCATGGAACAACAAACCGTGTCCATCGCCAA
GGCCGGCATCATCTGCACCTTGAACGCGCGGACGTCGATTCTGGCATCGG
CGAACCCGGTGGACAGTAGGTATAACCCCAAGCTGTCGGTGGTGGAAAAT
ATCCGGCTGCCCCCCACATTGTTGTCAAGGTTTGATTTAATTTACCTTAT
TTTAGACAACCCGGATGAGGATAAGGATAGGAGGTTGGCCCGACATTTGG
TGAGCCTTTATTACCAGGAGCCGGCGGTGGAGGCGCCGGACGTGAACCAC
TCCCTCCTTAAGGATTATATTGCCTATGCCCGCGCCCATGTATTTCCTGT
CCTGAGCGAGGAAGCGGGCGAAGAACTGGTGCAGGGCTATCTAGGGTTAA
GGGGGAGTGGGGGGGAAGGGAAGACGATCACCGCGACCCCTCGTCAATTG
GAGAGCCTGATTCGTTTGTCGGAGGCACTAGCAAAGATACGCTTGGCGAC
AGTTGTAGAGAAGAGGGATGTGACGGAGGCGATGAGGCTGATGAACGAGG
CTACGTTGAAGGCAGCCACCGACCCGGAGACAGGACAACTGGACCTGGGG
AACATCGATGGAACGAGCAGGGACCGTGAAGCACGGCAGCAATTGGCGGC
GGCGGTGAAGGAGTACTTGATGGCGAGAAAGGGGCAGAGGATGAGTGTAA
GTGAGATACGGCATGGCATGCAGGCACAAAGCTCGGTGGAAGTGAAGCAG
GGATTGTTGGTGGATGTGTTGAGAAAAGAGCTGGAACCGGAGGGGGTAGT
GAAGTATTTGCAGGCCACACACACGGTGGTCATCCAGTAA
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Synonyms
Publications