NO07G00620.1, NO07G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00620.1
Unique NameNO07G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1636
Alignment locationchr7:229701..232607 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:229701..232607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00620.1 vs.
Match: EWM27321.1 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG [Nannochloropsis gaditana])

HSP 1 Score: 620.5 bits (1599), Expect = 3.000e-174
Identity = 301/342 (88.01%), Postives = 321/342 (93.86%), Query Frame = 0 
Query:    1 MTSPAPEKKYTMAVKAYKNPDFLNSGHARFIRVMCEYEETMYRLKAYGVKSTILFFGSARAKSKAQYDSRMEELTQALGEAVTEKEREDAEGAMAVLRKTEWLVEYFDKVTELSKRLTEWSMHSGHKLAQARTYTGVTRYHLKTRGPAPHQSYSIIDEDVKDHPEQSIYITTGGGPGFMEAANKGANEVPGALTIGMGITLPFEDGLNPYVSEELAFEFHYFFTRKFWMVYHCQALVVAPGGMGTLDELFEVLTLKQTGKVQPDMPVVLFGKKFWKNIINWEAICEYGVISQKDVSDLFFADTVDEAYEYLLSKLTKAPPNDIFKEFDGDNAPNDNTQSRVA 343
            M SPAPEKKYTMAVKAYKNPDFLNSGHARFIRVMCEYEETMYRLKAYGVKSTILFFGSARAKS+ QYD RM EL +AL  AVTE+E++DAE A+A LRKTEWL EYFDKVTELSKRLT+WS+ S HKLAQARTYTGVTRYHLKTRGP PHQSYSIIDEDVK+HPEQSIYITTGGGPGFMEAANKGA+EVPGALTIGMGITLPFEDGLNPYVSEELAFEFHYFFTRKFWMVYHCQALVVAPGGMGTLDELFEVLTLKQTGKVQPDMPVVLFGK+FWK+II+W+A+ +YGVISQKDVS LFFADTVDEA++YLLS+LTKAP NDIFKEFDGD    DNT+S VA
Sbjct:    1 MASPAPEKKYTMAVKAYKNPDFLNSGHARFIRVMCEYEETMYRLKAYGVKSTILFFGSARAKSREQYDHRMGELVEALAGAVTEQEQKDAEAAIATLRKTEWLTEYFDKVTELSKRLTDWSLQSEHKLAQARTYTGVTRYHLKTRGPVPHQSYSIIDEDVKEHPEQSIYITTGGGPGFMEAANKGASEVPGALTIGMGITLPFEDGLNPYVSEELAFEFHYFFTRKFWMVYHCQALVVAPGGMGTLDELFEVLTLKQTGKVQPDMPVVLFGKEFWKSIISWDALADYGVISQKDVSGLFFADTVDEAFDYLLSRLTKAPLNDIFKEFDGDKQAMDNTESVVA 342
The following BLAST results are available for this feature:
BLAST of NO07G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27321.13.000e-17488.01Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00620NO07G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00620.1NO07G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00620.1.cds1NO07G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00620.1.cds2NO07G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00620.1.cds3NO07G00620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00620.1.cds4NO07G00620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00620.1.cds5NO07G00620.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00620.1.cds6NO07G00620.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00620.1.cds7NO07G00620.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00620.1 ID=NO07G00620.1|Name=NO07G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
GGGAGAAGAAAATTGGAGTCGACTGCAACTGCTCTGGGAAGTGTTGCTCT
TGGTCTGGGGCGGCATTTGTTGATGGCTTCATCACCCCCAAGAAGACCTC
TGCCTTGATGGGCAGGTCGAGGCATGTCCAAGGAAAATTTCAAAGGAATG
GCGGTGTCCTTAGGGGACGCGGGGCTTTGGGCGAGGAGGACCGCCCCTCT
AGTCCGTTTGTTGCCTGTGGCAGCTTACAGTGATGTCGAAAAGAGCCACC
AAACACTCAAAGCAAACACTGCACATGCACAGTGCATAGAAACAGGGCTT
TTTAATCATCTGGTTGAAGCCGGTATTGCTTGCACTGTTGCCTTACTGGT
GCTAGCTGCGTATCTCTCTATCGCTCCGCAAGTCACACATACACGATTTT
TCCCGTCAATGTCCGACCCTTCATATACACAGCAAATATGACGTCGCCCG
CCCCCGAGAAGAAATACACCATGGCCGTCAAGGCCTACAAGAATCCGGAC
TTTCTGAACTCGGGCCACGCTCGCTTCATCCGTGTCATGTGCGAGTACGA
GGAAACGATGTACCGCCTTAAGGCCTACGGCGTGAAGAGCACCATCCTTT
TCTTCGGCTCTGCCAGGGCGAAGAGTAAGGCGCAGTATGACAGTAGGATG
GAAGAGTTAACGCAGGCGCTGGGGGAGGCAGTGACGGAGAAGGAGAGGGA
GGATGCCGAAGGAGCGATGGCTGTGTTGCGGAAGACGGAGTGGTTGGTCG
AGTATTTTGACAAGGTAACCGAGCTCTCCAAGCGCCTCACAGAGTGGTCG
ATGCACTCCGGGCACAAACTTGCGCAAGCCCGAACGTACACAGGCGTTAC
CCGCTATCACCTCAAGACTCGTGGCCCTGCCCCTCACCAGTCGTACTCCA
TCATCGACGAGGACGTGAAAGACCACCCGGAGCAATCGATATATATCACC
ACAGGCGGCGGGCCGGGATTCATGGAGGCGGCCAATAAGGGCGCGAACGA
GGTGCCAGGGGCGTTGACGATTGGCATGGGTATCACACTCCCCTTTGAGG
ATGGACTTAATCCCTACGTATCGGAAGAGCTGGCCTTCGAATTCCATTAC
TTCTTTACACGGAAGTTCTGGATGGTCTATCACTGCCAGGCCTTGGTGGT
AGCACCAGGGGGCATGGGCACACTCGACGAGCTCTTTGAGGTGCTAACGC
TGAAGCAGACAGGCAAGGTGCAACCTGATATGCCAGTGGTGCTCTTCGGA
AAGAAGTTTTGGAAGAACATCATTAATTGGGAGGCGATTTGTGAATATGG
CGTTATCTCGCAGAAAGACGTGTCAGACCTCTTTTTTGCCGACACCGTAG
ATGAAGCCTACGAGTACCTCCTGTCCAAGCTCACCAAGGCCCCACCCAAT
GACATTTTTAAGGAGTTTGACGGGGACAACGCCCCGAACGATAACACGCA
AAGCCGGGTTGCCTGAACGCAAGGGAGGGAAGGAAAGGGAGCGTGGGAGC
GAGGGAGGGCTTGCGCGGCGAATGGAGCGCGAGAAAGCGAAAGAGGCAGT
GACAGTGGAAGGGAATGATGGTTTATATTCATCGTCCTGGTCGCCTGGAG
AGGGAGGGAAGAATGTAGGACATTGTTTTGGGTGCA
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protein sequence of NO07G00620.1

>NO07G00620.1-protein ID=NO07G00620.1-protein|Name=NO07G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MTSPAPEKKYTMAVKAYKNPDFLNSGHARFIRVMCEYEETMYRLKAYGVK
STILFFGSARAKSKAQYDSRMEELTQALGEAVTEKEREDAEGAMAVLRKT
EWLVEYFDKVTELSKRLTEWSMHSGHKLAQARTYTGVTRYHLKTRGPAPH
QSYSIIDEDVKDHPEQSIYITTGGGPGFMEAANKGANEVPGALTIGMGIT
LPFEDGLNPYVSEELAFEFHYFFTRKFWMVYHCQALVVAPGGMGTLDELF
EVLTLKQTGKVQPDMPVVLFGKKFWKNIINWEAICEYGVISQKDVSDLFF
ADTVDEAYEYLLSKLTKAPPNDIFKEFDGDNAPNDNTQSRVA*
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mRNA from alignment at chr7:229701..232607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00620.1 ID=NO07G00620.1|Name=NO07G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2907bp|location=Sequence derived from alignment at chr7:229701..232607- (Nannochloropsis oceanica)
GGGAGAAGAAAATTGGAGTCGACTGCAACTGCTCTGGGAAGTGTTGCTCT
TGGTCTGGGGCGGCATTTGTTGATGGCTTCATCACCCCCAAGAAGACCTC
TGCCTTGATGGGCAGGTCGAGGCATGTCCAAGGAAAATTTCAAAGGAATG
GCGGTGTCCTTAGGGGACGCGGGGCTTTGGGCGAGGAGGACCGCCCCTCT
AGTCCGTTTGTTGCCTGTGGCAGCTTACAGTGATGTCGAAAAGAGCCACC
AAACACTCAAAGCAAACACTGCACATGCACAGTGCATAGAAACAGGGCTT
TTTAATCATCTGGTTGAAGCCGGTATTGCTTGCACTGTTGCCTTACTGGT
GCTAGCTGCGTATCTCTCTATCGCTCCGCAAGTCACACATACACGATTTT
TCCCGTCAATGTCCGACCCTTCATATACACAGCAAATATGACGTCGCCCG
CCCCCGAGAAGAAATACACCATGGCCGTCAAGGCCTACAAGAATCCGGAC
TTTCTGAACTCGGGCCACGCTCGCTTCATCCGTGTCATGTGCGAGTACGA
GGTACGTCTTGGTGTTGAGTGGGCCACCATGTGGGGCCTCTCTCTACCTG
CTCTTCTTCACAAGCTTCATTCCCCATCTCTAGCTTAGTTCGCCCATTTG
ACGCTTTTTTGGTCATATTTTCTTCCCCTAGTGGACTCAGTATTTTGTTC
TGTCCTCTCCGCAAATCACACCCCTCAGGAAACGATGTACCGCCTTAAGG
CCTACGGCGTGAAGAGCACCATCCTTTTCTTCGGCTCTGCCAGGGCGAAG
AGTAAGGCGCAGTATGACAGTAGGATGGAAGAGTTAACGCAGGCGCTGGG
GGAGGCAGTGACGGAGAAGGAGAGGGAGGATGCCGAAGGAGCGATGGCTG
TGTTGCGGAAGACGGAGTGGTTGGTCGAGTATTTTGACAAGGTAAAGGAG
GGGAGGAGGGAAGTAAGGAGAAATGAAGAGAGGAAAGAGATGAGATATGA
GTGACTTTTGTGATTGAGAGTTGCTACATGCACAATCATCGTGTGACTCT
TTTCAAAATTTAAAATCAAGCGTCTCACACAATTTCACTATCTCCATCCC
TCCTTCCCCCCTTTCCTCGCTCCCTCCGCAGGTAACCGAGCTCTCCAAGC
GCCTCACAGAGTGGTCGATGCACTCCGGGCACAAACTTGCGCAAGCCCGA
ACGTACACAGGCGTTACCCGCTATCACCTCAAGACTCGTGGCCCTGCCCC
TCACCAGTCGTACTCCATCATCGACGAGGACGTGAAAGACCACCCGGAGC
AATCGATATATATCACCACAGGCGGCGGGCCGGGATTCATGGAGGCGGCC
AATAAGGGCGCGAACGAGGTGCCAGGGGCGTTGACGATTGGGTAAGCCCC
CCTTCCCTCCCCCTTCCTCCCTCCTTCCCTCCCTGCAGAGCAATCGATGT
AGGACTCCATAAGGGTCAGGCCTACTATAGTAGAGCTGAAGGTGGCGTGG
CCCTGTCAACAAACACTTAAATGAGGTGCTTAGAGCCTTGACGAATGACC
ATTTTATCACGGACAATCGTGCGCACTTTCTCCCGTTGTCGTTACCTCCT
CATTGTCTCTTTCCCCCCAACTTTTTTCAACGCTCTTTCAATCAGTCAAC
TAGTCGCCGAATAACGTTCTACACCCTCACCTCCCCGCCTCACCCTCCAC
CATCCCTCCCTCAGCATGGGTATCACACTCCCCTTTGAGGATGGACTTAA
TCCCTACGTATCGGAAGAGCTGGCCTTCGAATTCCATTACTTCTTTACAC
GGAAGTTCTGGATGGTCTATCACTGCCAGGTAAGCCCCTCCCTCCCTCCC
TCCCTTCCTCCCTCCCTCCTTTCCTTTCTCCTCTCCTTACTCAGGCCCTA
GGTGTATGGGTACACTCGACGAGATCTTTGAGGTGCTGATGCTGAAGTAG
ACAGACTACTCACCCCCCTCCCTCCCTCTTTCCCTCCCTCCCTCCCTCCC
TCAGGCCTTGGTGGTAGCACCAGGGGGCATGGGCACACTCGACGAGCTCT
TTGAGGTGCTAACGCTGAAGCAGACAGGCAAGGTGCAACCTGATATGCCA
GTGGTGCTCTTCGGAAAGAAGTTTTGGAAGAACATCATTAATTGGGAGGC
GATTTGTGAATATGGCGTTATCTCGCAGGTTTGTATTTGCTTGGCCGTAA
TCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCATCCATCCTTGCATCGCTCCTATCATTGTATCTAAC
GCCCCTGCCCGTCGTTACTTTTCAATGTAAATTAGATAACGTATGGATAG
GTCCTTTCTCCTCTTTCGGTGGTTTGACTTTCATGGCTCATAAGACAAAA
CACCTCTCCCTCCCTCCCTCCCTCCCGCCCATCCCTTGTAGAAAGACGTG
TCAGACCTCTTTTTTGCCGACACCGTAGATGAAGCCTACGAGTACCTCCT
GTCCAAGCTCACCAAGGTAGGGAGGGAAGGAGGGAGGGGGGGTTGAGGAG
GAGGGAAGGGAAAAGGCTGCTGGAGCGGAGGGAGGAAAATGGGACGCACG
GATGTGTGTGTCAACTCACCTGCATCTCCCTCCCTCCCTCCCTCTTCCCC
TTTCCCCAGGCCCCACCCAATGACATTTTTAAGGAGTTTGACGGGGACAA
CGCCCCGAACGATAACACGCAAAGCCGGGTTGCCTGAACGCAAGGGAGGG
AAGGAAAGGGAGCGTGGGAGCGAGGGAGGGCTTGCGCGGCGAATGGAGCG
CGAGAAAGCGAAAGAGGCAGTGACAGTGGAAGGGAATGATGGTTTATATT
CATCGTCCTGGTCGCCTGGAGAGGGAGGGAAGAATGTAGGACATTGTTTT
GGGTGCA
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Coding sequence (CDS) from alignment at chr7:229701..232607-

>NO07G00620.1 ID=NO07G00620.1|Name=NO07G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr7:229701..232607- (Nannochloropsis oceanica)
ATGACGTCGCCCGCCCCCGAGAAGAAATACACCATGGCCGTCAAGGCCTA
CAAGAATCCGGACTTTCTGAACTCGGGCCACGCTCGCTTCATCCGTGTCA
TGTGCGAGTACGAGGAAACGATGTACCGCCTTAAGGCCTACGGCGTGAAG
AGCACCATCCTTTTCTTCGGCTCTGCCAGGGCGAAGAGTAAGGCGCAGTA
TGACAGTAGGATGGAAGAGTTAACGCAGGCGCTGGGGGAGGCAGTGACGG
AGAAGGAGAGGGAGGATGCCGAAGGAGCGATGGCTGTGTTGCGGAAGACG
GAGTGGTTGGTCGAGTATTTTGACAAGGTAACCGAGCTCTCCAAGCGCCT
CACAGAGTGGTCGATGCACTCCGGGCACAAACTTGCGCAAGCCCGAACGT
ACACAGGCGTTACCCGCTATCACCTCAAGACTCGTGGCCCTGCCCCTCAC
CAGTCGTACTCCATCATCGACGAGGACGTGAAAGACCACCCGGAGCAATC
GATATATATCACCACAGGCGGCGGGCCGGGATTCATGGAGGCGGCCAATA
AGGGCGCGAACGAGGTGCCAGGGGCGTTGACGATTGGCATGGGTATCACA
CTCCCCTTTGAGGATGGACTTAATCCCTACGTATCGGAAGAGCTGGCCTT
CGAATTCCATTACTTCTTTACACGGAAGTTCTGGATGGTCTATCACTGCC
AGGCCTTGGTGGTAGCACCAGGGGGCATGGGCACACTCGACGAGCTCTTT
GAGGTGCTAACGCTGAAGCAGACAGGCAAGGTGCAACCTGATATGCCAGT
GGTGCTCTTCGGAAAGAAGTTTTGGAAGAACATCATTAATTGGGAGGCGA
TTTGTGAATATGGCGTTATCTCGCAGAAAGACGTGTCAGACCTCTTTTTT
GCCGACACCGTAGATGAAGCCTACGAGTACCTCCTGTCCAAGCTCACCAA
GGCCCCACCCAATGACATTTTTAAGGAGTTTGACGGGGACAACGCCCCGA
ACGATAACACGCAAAGCCGGGTTGCCTGA
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Synonyms
Publications