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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:212479..213819 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00580.1 vs.
Match: XP_005854480.1 (hypothetical protein NGA_0238600 [Nannochloropsis gaditana CCMP526]; EKU21877.1 hypothetical protein NGA_0238600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 195.3 bits (495), Expect = 4.100e-46 Identity = 154/371 (41.51%), Postives = 202/371 (54.45%), Query Frame = 0
Query: 5 SLLWEQLQGLE-DASPLPL-LLPLDEAQRAADDGGEAAFASLLRQASAQPFVLGTNDMSSNDKSPILKLADALREGIEELEAAVALAASNGGAAANGAAVMNVQDNSKSSTSIEAFLTGRGYPYALDNSVDILTFLAAELQVARVLATRQA-----------------------PSSSPSSTKTNSEIQFIFRILTKALKSL-DISATSSSVPPSASPSSLPSLLTLVESALDARLAALPLNYITQDERLVAPSPSSTSSTPSPSTTTGVST------------PSVQLTPKQRAVLTDIDMNLRHDFALRRRMLLKRLDVTLQSFLWAQKAKGVEATIVSAVNGKREGLREEAREDIGVDAGLNAGKSVM 338
SLLW+QLQ L D + L LLP+ E QRAA+D GEAAF + L Q +Q N++ P+ +LA AL E ++ +E AA A + S ++ I FL+ RGYPY++D++ DIL FLA ELQ A LA R PS + S+TK N EI I R+LTKAL +L D S+ S+S PP + P L SLL +E A+DARLAALP +++QDE LV+ P VQLTP QR VL DID +LR+DF LRR+M+LKRLDV+L+SFLW ++ + +V V R+GLREE R++IGVDA L AGK V+
Sbjct: 15 SLLWDQLQDLAADENVLSSQLLPVSETQRAAEDEGEAAFQAYLHQNGSQIL---------NEECPLHELARALMEKVQGIETTRNSAAR---ATDTDMDHSTTESPSNDTSPILKFLSTRGYPYSVDSAEDILLFLAGELQAASTLAARARSCEGTGGTNATTPVCDTHVQPPLPSLAGSTTK-NEEIHGIQRLLTKALDNLQDTSSLSTSTPPLSLP--LSSLLGALEKAVDARLAALPPKFLSQDELLVSRVPEKGKEEEGGQCPQNAGAMDEGGSGECPRKSEVQLTPSQRQVLEDIDAHLRNDFGLRRQMVLKRLDVSLRSFLWTERVAEGDTVLVKRVEAARQGLREEVRDEIGVDAALRAGKGVI 370
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00580.1 ID=NO07G00580.1|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp AACAGAAACATGGCCTCTTTTTCATTGCTGTGGGAACAGCTTCAGGGCCT TGAAGACGCGTCGCCGCTCCCTTTGCTCCTTCCCCTCGACGAAGCACAGC GTGCGGCGGACGATGGGGGGGAGGCCGCATTTGCCTCCTTACTGAGGCAA GCAAGCGCCCAACCATTCGTCCTTGGCACCAATGACATGAGCAGCAACGA TAAATCCCCAATTCTAAAGCTGGCGGATGCCTTGAGGGAAGGCATTGAGG AATTGGAGGCGGCAGTAGCATTAGCAGCAAGCAATGGTGGCGCGGCAGCA AACGGAGCAGCAGTCATGAACGTCCAGGACAACAGCAAGAGTAGCACCAG TATTGAAGCATTTTTAACAGGACGTGGATACCCTTATGCCCTTGACAACT CCGTTGATATCCTCACTTTCCTGGCAGCCGAACTGCAAGTGGCGCGTGTC CTAGCTACTCGCCAAGCCCCTTCCTCCTCCCCCTCCTCCACAAAGACGAA TAGCGAAATTCAATTCATCTTCCGGATACTCACCAAGGCCCTCAAAAGCC TCGATATATCCGCTACCTCCTCCTCCGTCCCTCCTTCCGCGTCCCCCTCT TCTCTCCCCTCCCTCCTCACCCTCGTTGAATCCGCTCTAGATGCCCGGCT AGCCGCTCTTCCCCTCAATTACATCACGCAAGACGAACGTCTCGTTGCCC CTTCCCCTTCCTCTACGTCTTCTACCCCCTCCCCCTCCACTACCACCGGC GTTTCCACGCCCTCCGTACAACTCACACCAAAGCAGAGAGCCGTCCTCAC CGACATTGACATGAACCTCCGGCATGACTTCGCACTCCGCAGACGCATGC TTCTCAAACGTCTTGACGTGACCCTTCAGTCTTTTTTATGGGCCCAGAAA GCAAAGGGCGTGGAAGCGACCATCGTGTCGGCCGTGAATGGTAAAAGGGA GGGGCTGAGGGAGGAAGCGAGGGAGGACATTGGGGTGGACGCTGGTTTGA ACGCGGGGAAAAGTGTCATGTACCTCCAGGCCTGTAAGATCACGCAGGAG AGGGGGGTAGGGTTAGGGAAGGAGTTAGTGAAGAAATTGGTTATTGGGGC GGTGCCTGACCGGGGAGGGAGGGCGAATGAGATGAGACCGAGTAAGAGTG AGGGGTGGGGAGGAGGAGGTGGAGGAGGGAGGGGGGGAGGGGAGGGGGAG GAGGGAGGGGCGGTGGAGGGTGGCGGGGGAAGAAGAAGAGTGGTGGTGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGAAAGGGAAGGAGG AGGGAGGGAAGGAGGAAGGGGAAGAGGGAGAGGGGGGGTAG back to topprotein sequence of NO07G00580.1 >NO07G00580.1-protein ID=NO07G00580.1-protein|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp MASFSLLWEQLQGLEDASPLPLLLPLDEAQRAADDGGEAAFASLLRQASA QPFVLGTNDMSSNDKSPILKLADALREGIEELEAAVALAASNGGAAANGA AVMNVQDNSKSSTSIEAFLTGRGYPYALDNSVDILTFLAAELQVARVLAT RQAPSSSPSSTKTNSEIQFIFRILTKALKSLDISATSSSVPPSASPSSLP SLLTLVESALDARLAALPLNYITQDERLVAPSPSSTSSTPSPSTTTGVST PSVQLTPKQRAVLTDIDMNLRHDFALRRRMLLKRLDVTLQSFLWAQKAKG VEATIVSAVNGKREGLREEAREDIGVDAGLNAGKSVMYLQACKITQERGV GLGKELVKKLVIGAVPDRGGRANEMRPSKSEGWGGGGGGGRGGGEGEEGG AVEGGGGRRRVVVEEEEEEEEEEEGQKGKEEGGKEEGEEGEGG* back to topmRNA from alignment at chr7:212479..213819- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00580.1 ID=NO07G00580.1|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr7:212479..213819- (Nannochloropsis oceanica) AACAGAAACATGGCCTCTTTTTCATTGCTGTGGGAACAGCTTCAGGGCCT
TGAAGACGCGTCGCCGCTCCCTTTGCTCCTTCCCCTCGACGAAGCACAGC
GTGCGGCGGACGATGGGGGGGAGGCCGCATTTGCCTCCTTACTGAGGCAA
GCAAGCGCCCAACCATTCGTCCTTGGCACCAATGACATGAGCAGCAACGA
TAAATCCCCAATTCTAAAGCTGGCGGATGCCTTGAGGGAAGGCATTGAGG
AATTGGAGGCGGCAGTAGCATTAGCAGCAAGCAATGGTGGCGCGGCAGCA
AACGGAGCAGCAGTCATGAACGTCCAGGACAACAGCAAGAGTAGCACCAG
TATTGAAGCATTTTTAACAGGACGTGGATACCCTTATGCCCTTGACAACT
CCGTTGATATCCTCACTTTCCTGGCAGCCGAACTGCAAGTGGCGCGTGTC
CTAGCTACTCGCCAAGCCCCTTCCTCCTCCCCCTCCTCCACAAAGACGAA
TAGCGAAATTCAATTCATCTTCCGGATACTCACCAAGGCCCTCAAAAGCC
TCGATATATCCGCTACCTCCTCCTCCGTCCCTCCTTCCGCGTCCCCCTCT
TCTCTCCCCTCCCTCCTCACCCTCGTTGAATCCGCTCTAGATGCCCGGCT
AGCCGCTCTTCCCCTCAATTACATCACGCAAGACGAACGTCTCGTTGCCC
CTTCCCCTTCCTCTACGTCTTCTACCCCCTCCCCCTCCACTACCACCGGC
GTTTCCACGCCCTCCGTACAACTCACACCAAAGCAGAGAGCCGTCCTCAC
CGACATTGACATGAACCTCCGGCATGACTTCGCACTCCGCAGACGCATGC
TTCTCAAACGTCTTGACGTGACCCTTCAGTCTTTTTTATGGGCCCAGAAA
GCAAAGGGCGTGGAAGCGACCATCGTGTCGGCCGTGAATGGTAAAAGGGA
GGGGCTGAGGGAGGAAGCGAGGGAGGACATTGGGGTGGACGCTGGTTTGA
ACGCGGGGAAAAGTGTCATGTACCTCCAGGCCTGTAAGATCACGCAGGAG
AGGGGGGTAGGGTTAGGGAAGGAGTTAGTGAAGAAATTGGTTATTGGGGC
GGTGCCTGACCGGGGAGGGAGGGCGAATGAGATGAGACCGAGTAAGAGTG
AGGGGTGGGGAGGAGGAGGTGGAGGAGGGAGGGGGGGAGGGGAGGGGGAG
GAGGGAGGGGCGGTGGAGGGTGGCGGGGGAAGAAGAAGAGTGGTGGTGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGAAAGGGAAGGAGG
AGGGAGGGAAGGAGGAAGGGGAAGAGGGAGAGGGGGGGTAG back to topCoding sequence (CDS) from alignment at chr7:212479..213819- >NO07G00580.1 ID=NO07G00580.1|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr7:212479..213819- (Nannochloropsis oceanica) ATGGCCTCTTTTTCATTGCTGTGGGAACAGCTTCAGGGCCTTGAAGACGC GTCGCCGCTCCCTTTGCTCCTTCCCCTCGACGAAGCACAGCGTGCGGCGG ACGATGGGGGGGAGGCCGCATTTGCCTCCTTACTGAGGCAAGCAAGCGCC CAACCATTCGTCCTTGGCACCAATGACATGAGCAGCAACGATAAATCCCC AATTCTAAAGCTGGCGGATGCCTTGAGGGAAGGCATTGAGGAATTGGAGG CGGCAGTAGCATTAGCAGCAAGCAATGGTGGCGCGGCAGCAAACGGAGCA GCAGTCATGAACGTCCAGGACAACAGCAAGAGTAGCACCAGTATTGAAGC ATTTTTAACAGGACGTGGATACCCTTATGCCCTTGACAACTCCGTTGATA TCCTCACTTTCCTGGCAGCCGAACTGCAAGTGGCGCGTGTCCTAGCTACT CGCCAAGCCCCTTCCTCCTCCCCCTCCTCCACAAAGACGAATAGCGAAAT TCAATTCATCTTCCGGATACTCACCAAGGCCCTCAAAAGCCTCGATATAT CCGCTACCTCCTCCTCCGTCCCTCCTTCCGCGTCCCCCTCTTCTCTCCCC TCCCTCCTCACCCTCGTTGAATCCGCTCTAGATGCCCGGCTAGCCGCTCT TCCCCTCAATTACATCACGCAAGACGAACGTCTCGTTGCCCCTTCCCCTT CCTCTACGTCTTCTACCCCCTCCCCCTCCACTACCACCGGCGTTTCCACG CCCTCCGTACAACTCACACCAAAGCAGAGAGCCGTCCTCACCGACATTGA CATGAACCTCCGGCATGACTTCGCACTCCGCAGACGCATGCTTCTCAAAC GTCTTGACGTGACCCTTCAGTCTTTTTTATGGGCCCAGAAAGCAAAGGGC GTGGAAGCGACCATCGTGTCGGCCGTGAATGGTAAAAGGGAGGGGCTGAG GGAGGAAGCGAGGGAGGACATTGGGGTGGACGCTGGTTTGAACGCGGGGA AAAGTGTCATGTACCTCCAGGCCTGTAAGATCACGCAGGAGAGGGGGGTA GGGTTAGGGAAGGAGTTAGTGAAGAAATTGGTTATTGGGGCGGTGCCTGA CCGGGGAGGGAGGGCGAATGAGATGAGACCGAGTAAGAGTGAGGGGTGGG GAGGAGGAGGTGGAGGAGGGAGGGGGGGAGGGGAGGGGGAGGAGGGAGGG GCGGTGGAGGGTGGCGGGGGAAGAAGAAGAGTGGTGGTGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGGGCAGAAAGGGAAGGAGGAGGGAGGGA AGGAGGAAGGGGAAGAGGGAGAGGGGGGGTAG back to top
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