NO07G00580.1, NO07G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00580.1
Unique NameNO07G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr7:212479..213819 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:212479..213819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00580.1 vs.
Match: XP_005854480.1 (hypothetical protein NGA_0238600 [Nannochloropsis gaditana CCMP526]; EKU21877.1 hypothetical protein NGA_0238600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 195.3 bits (495), Expect = 4.100e-46
Identity = 154/371 (41.51%), Postives = 202/371 (54.45%), Query Frame = 0
Query:    5 SLLWEQLQGLE-DASPLPL-LLPLDEAQRAADDGGEAAFASLLRQASAQPFVLGTNDMSSNDKSPILKLADALREGIEELEAAVALAASNGGAAANGAAVMNVQDNSKSSTSIEAFLTGRGYPYALDNSVDILTFLAAELQVARVLATRQA-----------------------PSSSPSSTKTNSEIQFIFRILTKALKSL-DISATSSSVPPSASPSSLPSLLTLVESALDARLAALPLNYITQDERLVAPSPSSTSSTPSPSTTTGVST------------PSVQLTPKQRAVLTDIDMNLRHDFALRRRMLLKRLDVTLQSFLWAQKAKGVEATIVSAVNGKREGLREEAREDIGVDAGLNAGKSVM 338
            SLLW+QLQ L  D + L   LLP+ E QRAA+D GEAAF + L Q  +Q           N++ P+ +LA AL E ++ +E     AA    A          +  S  ++ I  FL+ RGYPY++D++ DIL FLA ELQ A  LA R                         PS + S+TK N EI  I R+LTKAL +L D S+ S+S PP + P  L SLL  +E A+DARLAALP  +++QDE LV+  P                               VQLTP QR VL DID +LR+DF LRR+M+LKRLDV+L+SFLW ++    +  +V  V   R+GLREE R++IGVDA L AGK V+
Sbjct:   15 SLLWDQLQDLAADENVLSSQLLPVSETQRAAEDEGEAAFQAYLHQNGSQIL---------NEECPLHELARALMEKVQGIETTRNSAAR---ATDTDMDHSTTESPSNDTSPILKFLSTRGYPYSVDSAEDILLFLAGELQAASTLAARARSCEGTGGTNATTPVCDTHVQPPLPSLAGSTTK-NEEIHGIQRLLTKALDNLQDTSSLSTSTPPLSLP--LSSLLGALEKAVDARLAALPPKFLSQDELLVSRVPEKGKEEEGGQCPQNAGAMDEGGSGECPRKSEVQLTPSQRQVLEDIDAHLRNDFGLRRQMVLKRLDVSLRSFLWTERVAEGDTVLVKRVEAARQGLREEVRDEIGVDAALRAGKGVI 370          
The following BLAST results are available for this feature:
BLAST of NO07G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854480.14.100e-4641.51hypothetical protein NGA_0238600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00580NO07G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00580.1NO07G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00580.1.cds1NO07G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00580.1 ID=NO07G00580.1|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
AACAGAAACATGGCCTCTTTTTCATTGCTGTGGGAACAGCTTCAGGGCCT
TGAAGACGCGTCGCCGCTCCCTTTGCTCCTTCCCCTCGACGAAGCACAGC
GTGCGGCGGACGATGGGGGGGAGGCCGCATTTGCCTCCTTACTGAGGCAA
GCAAGCGCCCAACCATTCGTCCTTGGCACCAATGACATGAGCAGCAACGA
TAAATCCCCAATTCTAAAGCTGGCGGATGCCTTGAGGGAAGGCATTGAGG
AATTGGAGGCGGCAGTAGCATTAGCAGCAAGCAATGGTGGCGCGGCAGCA
AACGGAGCAGCAGTCATGAACGTCCAGGACAACAGCAAGAGTAGCACCAG
TATTGAAGCATTTTTAACAGGACGTGGATACCCTTATGCCCTTGACAACT
CCGTTGATATCCTCACTTTCCTGGCAGCCGAACTGCAAGTGGCGCGTGTC
CTAGCTACTCGCCAAGCCCCTTCCTCCTCCCCCTCCTCCACAAAGACGAA
TAGCGAAATTCAATTCATCTTCCGGATACTCACCAAGGCCCTCAAAAGCC
TCGATATATCCGCTACCTCCTCCTCCGTCCCTCCTTCCGCGTCCCCCTCT
TCTCTCCCCTCCCTCCTCACCCTCGTTGAATCCGCTCTAGATGCCCGGCT
AGCCGCTCTTCCCCTCAATTACATCACGCAAGACGAACGTCTCGTTGCCC
CTTCCCCTTCCTCTACGTCTTCTACCCCCTCCCCCTCCACTACCACCGGC
GTTTCCACGCCCTCCGTACAACTCACACCAAAGCAGAGAGCCGTCCTCAC
CGACATTGACATGAACCTCCGGCATGACTTCGCACTCCGCAGACGCATGC
TTCTCAAACGTCTTGACGTGACCCTTCAGTCTTTTTTATGGGCCCAGAAA
GCAAAGGGCGTGGAAGCGACCATCGTGTCGGCCGTGAATGGTAAAAGGGA
GGGGCTGAGGGAGGAAGCGAGGGAGGACATTGGGGTGGACGCTGGTTTGA
ACGCGGGGAAAAGTGTCATGTACCTCCAGGCCTGTAAGATCACGCAGGAG
AGGGGGGTAGGGTTAGGGAAGGAGTTAGTGAAGAAATTGGTTATTGGGGC
GGTGCCTGACCGGGGAGGGAGGGCGAATGAGATGAGACCGAGTAAGAGTG
AGGGGTGGGGAGGAGGAGGTGGAGGAGGGAGGGGGGGAGGGGAGGGGGAG
GAGGGAGGGGCGGTGGAGGGTGGCGGGGGAAGAAGAAGAGTGGTGGTGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGAAAGGGAAGGAGG
AGGGAGGGAAGGAGGAAGGGGAAGAGGGAGAGGGGGGGTAG
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protein sequence of NO07G00580.1

>NO07G00580.1-protein ID=NO07G00580.1-protein|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MASFSLLWEQLQGLEDASPLPLLLPLDEAQRAADDGGEAAFASLLRQASA
QPFVLGTNDMSSNDKSPILKLADALREGIEELEAAVALAASNGGAAANGA
AVMNVQDNSKSSTSIEAFLTGRGYPYALDNSVDILTFLAAELQVARVLAT
RQAPSSSPSSTKTNSEIQFIFRILTKALKSLDISATSSSVPPSASPSSLP
SLLTLVESALDARLAALPLNYITQDERLVAPSPSSTSSTPSPSTTTGVST
PSVQLTPKQRAVLTDIDMNLRHDFALRRRMLLKRLDVTLQSFLWAQKAKG
VEATIVSAVNGKREGLREEAREDIGVDAGLNAGKSVMYLQACKITQERGV
GLGKELVKKLVIGAVPDRGGRANEMRPSKSEGWGGGGGGGRGGGEGEEGG
AVEGGGGRRRVVVEEEEEEEEEEEGQKGKEEGGKEEGEEGEGG*
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mRNA from alignment at chr7:212479..213819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00580.1 ID=NO07G00580.1|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr7:212479..213819- (Nannochloropsis oceanica)
AACAGAAACATGGCCTCTTTTTCATTGCTGTGGGAACAGCTTCAGGGCCT TGAAGACGCGTCGCCGCTCCCTTTGCTCCTTCCCCTCGACGAAGCACAGC GTGCGGCGGACGATGGGGGGGAGGCCGCATTTGCCTCCTTACTGAGGCAA GCAAGCGCCCAACCATTCGTCCTTGGCACCAATGACATGAGCAGCAACGA TAAATCCCCAATTCTAAAGCTGGCGGATGCCTTGAGGGAAGGCATTGAGG AATTGGAGGCGGCAGTAGCATTAGCAGCAAGCAATGGTGGCGCGGCAGCA AACGGAGCAGCAGTCATGAACGTCCAGGACAACAGCAAGAGTAGCACCAG TATTGAAGCATTTTTAACAGGACGTGGATACCCTTATGCCCTTGACAACT CCGTTGATATCCTCACTTTCCTGGCAGCCGAACTGCAAGTGGCGCGTGTC CTAGCTACTCGCCAAGCCCCTTCCTCCTCCCCCTCCTCCACAAAGACGAA TAGCGAAATTCAATTCATCTTCCGGATACTCACCAAGGCCCTCAAAAGCC TCGATATATCCGCTACCTCCTCCTCCGTCCCTCCTTCCGCGTCCCCCTCT TCTCTCCCCTCCCTCCTCACCCTCGTTGAATCCGCTCTAGATGCCCGGCT AGCCGCTCTTCCCCTCAATTACATCACGCAAGACGAACGTCTCGTTGCCC CTTCCCCTTCCTCTACGTCTTCTACCCCCTCCCCCTCCACTACCACCGGC GTTTCCACGCCCTCCGTACAACTCACACCAAAGCAGAGAGCCGTCCTCAC CGACATTGACATGAACCTCCGGCATGACTTCGCACTCCGCAGACGCATGC TTCTCAAACGTCTTGACGTGACCCTTCAGTCTTTTTTATGGGCCCAGAAA GCAAAGGGCGTGGAAGCGACCATCGTGTCGGCCGTGAATGGTAAAAGGGA GGGGCTGAGGGAGGAAGCGAGGGAGGACATTGGGGTGGACGCTGGTTTGA ACGCGGGGAAAAGTGTCATGTACCTCCAGGCCTGTAAGATCACGCAGGAG AGGGGGGTAGGGTTAGGGAAGGAGTTAGTGAAGAAATTGGTTATTGGGGC GGTGCCTGACCGGGGAGGGAGGGCGAATGAGATGAGACCGAGTAAGAGTG AGGGGTGGGGAGGAGGAGGTGGAGGAGGGAGGGGGGGAGGGGAGGGGGAG GAGGGAGGGGCGGTGGAGGGTGGCGGGGGAAGAAGAAGAGTGGTGGTGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCAGAAAGGGAAGGAGG AGGGAGGGAAGGAGGAAGGGGAAGAGGGAGAGGGGGGGTAG
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Coding sequence (CDS) from alignment at chr7:212479..213819-

>NO07G00580.1 ID=NO07G00580.1|Name=NO07G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr7:212479..213819- (Nannochloropsis oceanica)
ATGGCCTCTTTTTCATTGCTGTGGGAACAGCTTCAGGGCCTTGAAGACGC
GTCGCCGCTCCCTTTGCTCCTTCCCCTCGACGAAGCACAGCGTGCGGCGG
ACGATGGGGGGGAGGCCGCATTTGCCTCCTTACTGAGGCAAGCAAGCGCC
CAACCATTCGTCCTTGGCACCAATGACATGAGCAGCAACGATAAATCCCC
AATTCTAAAGCTGGCGGATGCCTTGAGGGAAGGCATTGAGGAATTGGAGG
CGGCAGTAGCATTAGCAGCAAGCAATGGTGGCGCGGCAGCAAACGGAGCA
GCAGTCATGAACGTCCAGGACAACAGCAAGAGTAGCACCAGTATTGAAGC
ATTTTTAACAGGACGTGGATACCCTTATGCCCTTGACAACTCCGTTGATA
TCCTCACTTTCCTGGCAGCCGAACTGCAAGTGGCGCGTGTCCTAGCTACT
CGCCAAGCCCCTTCCTCCTCCCCCTCCTCCACAAAGACGAATAGCGAAAT
TCAATTCATCTTCCGGATACTCACCAAGGCCCTCAAAAGCCTCGATATAT
CCGCTACCTCCTCCTCCGTCCCTCCTTCCGCGTCCCCCTCTTCTCTCCCC
TCCCTCCTCACCCTCGTTGAATCCGCTCTAGATGCCCGGCTAGCCGCTCT
TCCCCTCAATTACATCACGCAAGACGAACGTCTCGTTGCCCCTTCCCCTT
CCTCTACGTCTTCTACCCCCTCCCCCTCCACTACCACCGGCGTTTCCACG
CCCTCCGTACAACTCACACCAAAGCAGAGAGCCGTCCTCACCGACATTGA
CATGAACCTCCGGCATGACTTCGCACTCCGCAGACGCATGCTTCTCAAAC
GTCTTGACGTGACCCTTCAGTCTTTTTTATGGGCCCAGAAAGCAAAGGGC
GTGGAAGCGACCATCGTGTCGGCCGTGAATGGTAAAAGGGAGGGGCTGAG
GGAGGAAGCGAGGGAGGACATTGGGGTGGACGCTGGTTTGAACGCGGGGA
AAAGTGTCATGTACCTCCAGGCCTGTAAGATCACGCAGGAGAGGGGGGTA
GGGTTAGGGAAGGAGTTAGTGAAGAAATTGGTTATTGGGGCGGTGCCTGA
CCGGGGAGGGAGGGCGAATGAGATGAGACCGAGTAAGAGTGAGGGGTGGG
GAGGAGGAGGTGGAGGAGGGAGGGGGGGAGGGGAGGGGGAGGAGGGAGGG
GCGGTGGAGGGTGGCGGGGGAAGAAGAAGAGTGGTGGTGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGGCAGAAAGGGAAGGAGGAGGGAGGGA
AGGAGGAAGGGGAAGAGGGAGAGGGGGGGTAG
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Synonyms
Publications