NO07G00550.2, NO07G00550.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00550.2
Unique NameNO07G00550.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2969
Alignment locationchr7:203059..206327 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:203059..206327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00550.2 vs.
Match: EWM27310.1 (protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 421.8 bits (1083), Expect = 3.100e-114
Identity = 247/513 (48.15%), Postives = 304/513 (59.26%), Query Frame = 0
Query:    6 FVPPHLERIAWERRLVRGLAGHTFSETLLITEPSASDGADRDDIREGRQPQPRPPWPLLRRD---------ASRAYLLLRLLSHDKLHVATILASEVREDKATGVMIQETGPYYVVKVVRLDCLAIDPIENPFNEAAALQLLLQNEGLLGTLPPSLPRLHAAFKDQHHLYLMTPYAPGGDLFNYLARRPPAR-RHLSERKACAFLLDIVEALTYLKKNGMAHRDVSLENVVLALGEVMTEEEVWREEAEDWIGSAPSALYPVAGGGGGGAAAAAAAAAAVAGGQQRRVHDQCVLLPAPYPEVLLGEQAFLPTMPHFFHSTGYGPAPPPGSHGP----THHQQAGHVPITVGQEMRAAEASALEPSPPPQAHHYRHHYYNVLHPPSSSSSPSYSSNSSSASPPPHPSL----PPPPRRHWRCTLIDLGMASRLPESKDGIKIRRSYHQSRGKPGYVSPEIFYEQPSDGFSSDIWSLGVILYTLLTGHPLYASPWDPAFEALVGGKTRRLIHHYK 501
            F  P + R+ WER L+ G  GH F   +L+ +P +S+       + G      P +    R          A R Y+L R+L HDK HV T+LASE+RE  + G+ I+  GP+Y VK+ RLD L  D  E PFNE AALQLL   E  LG  PPSLPR HAA +D HHLYL TPY PGGDL  Y+++RP  + R L E KAC F LDIV AL YL+   + HRD+SLEN+VL LGE MT  E   E+ E+      + L+     GG G    A   A      +  +HDQ VLLP P+P+VLLGE A LP MPH  H+ GYGPAPPP   G     T+   AGH+  +   +  A      +P P P+AHHYRH YY+ L      + P  S   S   PPP PS     PPPPRRHWRC LID GMA RLPESK G  I  +  + RGK GYVSPE +YEQP +G S+D+WSLGVILY  LTGHPLY  PWDPAF+AL  G+ R+++ HY+
Sbjct:    6 FPSPLIHRVEWERHLICGSEGHKFYGNVLVLKPGSSNP------QRGSVYTAAPDYGGKIRSHALSNISPKAGRIYVLHRVLVHDKPHVVTMLASELRETNSPGITIRTEGPFYAVKITRLDYLHHDSDEKPFNEVAALQLLETLEPSLGPCPPSLPRGHAAARDDHHLYLFTPYGPGGDLLTYISQRPGGKARRLGEDKACRFFLDIVAALEYLEAARVVHRDLSLENLVLTLGEEMTAWEAEEEKEEE------AVLWGEEEEGGEGGRQDADGGAREG---RAHIHDQRVLLPPPHPDVLLGENARLPHMPHLLHALGYGPAPPPVPPGTLGEVTNVHVAGHLRASTVTDREAMLDFLRQPPPGPEAHHYRHLYYHTLQ----DALPPSSFPVSPFPPPPPPSTPAPKPPPPRRHWRCVLIDFGMAVRLPESKSGKTIVLTQQRCRGKLGYVSPESYYEQPINGQSTDVWSLGVILYIFLTGHPLYRYPWDPAFKALAAGEARQVLAHYR 499          
The following BLAST results are available for this feature:
BLAST of NO07G00550.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27310.13.100e-11448.15protein kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00550NO07G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00550.2NO07G00550.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00550.2.cds1NO07G00550.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00550.2.cds2NO07G00550.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00550.2 ID=NO07G00550.2|Name=NO07G00550.2|organism=Nannochloropsis oceanica|type=mRNA|length=2969bp
ACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCTTGAAAGGATT
GCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACATTTAGTGA
AACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCTGATCGAGATG
ACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCCCCTGCTA
CGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGTCCCATGA
CAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAAGACAAGG
CCACTGGCGTCATGATCCAAGAAACGGGGCCATACTATGTGGTCAAGGTC
GTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAACGA
AGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAACCC
TCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACACCAC
CTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCT
CGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTG
CCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGC
ATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGA
GGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTG
GGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCG
AAGGGTGCACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCT
TGCTGGGCGAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCC
ACAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCA
CCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCG
CTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTAC
CGCCACCACTACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCC
CTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCC
TCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGA
ATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATC
CTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCT
ACGAGCAACCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTG
ATACTGTACACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGA
CCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACC
ATTATAAGGTAGGGTATGTGTGTGTGTGGGTGTGAGGGTGTCTGACTCTC
TCTCTCTCTTTCCCTCTCTCTCTCTTGTTCGTTGTCTCGCCTTTTCCGAA
GATCACAAACAAAGATCATACACCAAATAATCAAAATAAGTAATATAAGA
TATAGATGAACAACTAGTATGCAGTATGTATATCAGGACAAGATATACCA
AAAGTCTCACTCACGACTACCAACAAACAACGACAGCTGAAATATGGGTG
TTCCATTCACCTAACCGCTGAAGACCTCATCTGTGCAATGCTGAATCCCT
GCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGGCCTCCGCCTGGGTC
TGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGC
AGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGGTAATGGAGGTGTTGCA
GTAGCAGCAGCAGCAGTGAGGAGTGCTAGGTAAAGGAGGAGTATAAAAAG
GATGAAAAAAAGACGGAAGGAAAGAATTCCTGGTTCTACGACTGGAGAGG
AAATGAGGAGAGGATCGCACGACAAGGTGATGGCGGACAAGGCTTTACGC
ATTGAAAGGAAAACGGGTGACTCAAGTGAGAAAATGACAGGGGAATGTAC
TAGCACCACCGAGAGTAAACAAGCGGATAATGGATGACTGAAAGGAAACT
GTATGAGCACTTACAAGAGAGATTGAAGGGGTAATCGATGATTGAAATGT
ATGAGTTAATCGATGATTGAAATGTATGAGCAGGAAAAAAGTGAAAGGGT
ACTGGGTGATCCAGAGAGAGATTACAACGGATATGATTGGCGACATAAAG
AGAAAGTGGAAGAGTAATGGATGATCAAGAGATGGAAATAGAATATGGAT
AGGATTAGCGCCATAAAGAGAGAGAGTACACGGAACGGATTTGAAAGGAA
AAGAAAGCGAGAGGGGAATGGATTAGTAATAGAAAGAAGGAGAAAGGAAA
TGGAGCACCACAGAGATAAAGAGAAGAGGGAATGATGAGTAAGGGAGAGA
AAGCGAAAGCCGAATTTATTATTTAGATTGATTGAAATGTATGAGCACTA
AGGAGAGAACGCGAAAGGGGAATGGATGGGCAACACCAGAAAGAGCCGGC
AAATATGATATGGAAACCACGAGAAAAGCCAAAAGAAAAAAGAAATATAA
TTTTAATGCGACACCGAAAGGATTGTATAAATGAAGAGGACAGAGGCAGA
AAATGAAAGGGGAAAAGCTGACCGTGGAAAGGAGAAGGAGAAATCTACGC
TCATAAGACACCACGTTGACCACAATCATACTTGAGCCCATATTCACATC
CACACCCTCACCAAAACGACGACGAATGCAAGCACGTGCAAAAGAAAAGA
AAAACGTGCATCACTGCAA
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protein sequence of NO07G00550.2

>NO07G00550.2-protein ID=NO07G00550.2-protein|Name=NO07G00550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MDDNGFVPPHLERIAWERRLVRGLAGHTFSETLLITEPSASDGADRDDIR
EGRQPQPRPPWPLLRRDASRAYLLLRLLSHDKLHVATILASEVREDKATG
VMIQETGPYYVVKVVRLDCLAIDPIENPFNEAAALQLLLQNEGLLGTLPP
SLPRLHAAFKDQHHLYLMTPYAPGGDLFNYLARRPPARRHLSERKACAFL
LDIVEALTYLKKNGMAHRDVSLENVVLALGEVMTEEEVWREEAEDWIGSA
PSALYPVAGGGGGGAAAAAAAAAAVAGGQQRRVHDQCVLLPAPYPEVLLG
EQAFLPTMPHFFHSTGYGPAPPPGSHGPTHHQQAGHVPITVGQEMRAAEA
SALEPSPPPQAHHYRHHYYNVLHPPSSSSSPSYSSNSSSASPPPHPSLPP
PPRRHWRCTLIDLGMASRLPESKDGIKIRRSYHQSRGKPGYVSPEIFYEQ
PSDGFSSDIWSLGVILYTLLTGHPLYASPWDPAFEALVGGKTRRLIHHYK
VGYVCVWV*
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mRNA from alignment at chr7:203059..206327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00550.2 ID=NO07G00550.2|Name=NO07G00550.2|organism=Nannochloropsis oceanica|type=mRNA|length=3269bp|location=Sequence derived from alignment at chr7:203059..206327- (Nannochloropsis oceanica)
ACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCTTGAAAGGATT GCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACATTTAGTGA AACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCTGATCGAGATG ACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCCCCTGCTA CGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGTCCCATGA CAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAAGACAAGG CCACTGGCGTCATGATCCAAGAAACGGGGCCATACTATGTGGTCAAGGTG AGTCAGAGGGAAAGGAAGGGCGGGTGGGGGAAGGGGGGAGCACAGGGTAT CTCATAAGTTCAACCAGCTGGTGGGCAGCATTAAGGAAGAAGCCCCTTGA CAGGGGAGGGAGGAAAGGCCCCCCGAAAGTCGTCGGAGTTTTTCCCCTGA TTCCACCTCTAATACTATCTTACCCCTTTCCTCCCTCTTCATCGATGAAT CACGCTCAACAGCCGTCGAAATCTTACCGCTCTACCCCATCCTATTACAC TTACCCCCTTTGTCCCTGCCTCAATCCCTCCCTCCTTTCCTCCTTAGGTC GTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAACGA AGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAACCC TCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACACCAC CTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCT CGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTG CCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGC ATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGA GGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTG GGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCG AAGGGTGCACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCT TGCTGGGCGAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCC ACAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCA CCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCG CTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTAC CGCCACCACTACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCC CTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCC TCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGA ATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATC CTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCT ACGAGCAACCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTG ATACTGTACACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGA CCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACC ATTATAAGGTAGGGTATGTGTGTGTGTGGGTGTGAGGGTGTCTGACTCTC TCTCTCTCTTTCCCTCTCTCTCTCTTGTTCGTTGTCTCGCCTTTTCCGAA GATCACAAACAAAGATCATACACCAAATAATCAAAATAAGTAATATAAGA TATAGATGAACAACTAGTATGCAGTATGTATATCAGGACAAGATATACCA AAAGTCTCACTCACGACTACCAACAAACAACGACAGCTGAAATATGGGTG TTCCATTCACCTAACCGCTGAAGACCTCATCTGTGCAATGCTGAATCCCT GCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGGCCTCCGCCTGGGTC TGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGC AGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGGTAATGGAGGTGTTGCA GTAGCAGCAGCAGCAGTGAGGAGTGCTAGGTAAAGGAGGAGTATAAAAAG GATGAAAAAAAGACGGAAGGAAAGAATTCCTGGTTCTACGACTGGAGAGG AAATGAGGAGAGGATCGCACGACAAGGTGATGGCGGACAAGGCTTTACGC ATTGAAAGGAAAACGGGTGACTCAAGTGAGAAAATGACAGGGGAATGTAC TAGCACCACCGAGAGTAAACAAGCGGATAATGGATGACTGAAAGGAAACT GTATGAGCACTTACAAGAGAGATTGAAGGGGTAATCGATGATTGAAATGT ATGAGTTAATCGATGATTGAAATGTATGAGCAGGAAAAAAGTGAAAGGGT ACTGGGTGATCCAGAGAGAGATTACAACGGATATGATTGGCGACATAAAG AGAAAGTGGAAGAGTAATGGATGATCAAGAGATGGAAATAGAATATGGAT AGGATTAGCGCCATAAAGAGAGAGAGTACACGGAACGGATTTGAAAGGAA AAGAAAGCGAGAGGGGAATGGATTAGTAATAGAAAGAAGGAGAAAGGAAA TGGAGCACCACAGAGATAAAGAGAAGAGGGAATGATGAGTAAGGGAGAGA AAGCGAAAGCCGAATTTATTATTTAGATTGATTGAAATGTATGAGCACTA AGGAGAGAACGCGAAAGGGGAATGGATGGGCAACACCAGAAAGAGCCGGC AAATATGATATGGAAACCACGAGAAAAGCCAAAAGAAAAAAGAAATATAA TTTTAATGCGACACCGAAAGGATTGTATAAATGAAGAGGACAGAGGCAGA AAATGAAAGGGGAAAAGCTGACCGTGGAAAGGAGAAGGAGAAATCTACGC TCATAAGACACCACGTTGACCACAATCATACTTGAGCCCATATTCACATC CACACCCTCACCAAAACGACGACGAATGCAAGCACGTGCAAAAGAAAAGA AAAACGTGCATCACTGCAA
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Coding sequence (CDS) from alignment at chr7:203059..206327-

>NO07G00550.2 ID=NO07G00550.2|Name=NO07G00550.2|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at chr7:203059..206327- (Nannochloropsis oceanica)
ATGGACGATAATGGCTTCGTTCCCCCACACCTTGAAAGGATTGCGTGGGA
GCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACATTTAGTGAAACACTTT
TGATCACGGAGCCATCGGCTTCTGATGGTGCTGATCGAGATGACATACGA
GAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCCCCTGCTACGACGAGA
TGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGTCCCATGACAAGCTCC
ATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAAGACAAGGCCACTGGC
GTCATGATCCAAGAAACGGGGCCATACTATGTGGTCAAGGTCGTCCGCCT
AGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAACGAAGCAGCCG
CCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAACCCTCCCGCCC
TCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACACCACCTGTACCT
CATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCTCGCTCGTC
GTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTGCCTTTCTT
TTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGCATGGCGCA
CAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGAGGTCATGA
CGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTGGGAGCGCT
CCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCGAAGGGTGC
ACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCTTGCTGGGC
GAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCCACAGGCTA
CGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCACCAGCAGG
CTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCGCTGAAGCC
TCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTACCGCCACCA
CTACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCCCTCCTACT
CCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCCTCCCTCCC
CCACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGAATGGCTTC
CCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATCCTACCATC
AAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCTACGAGCAA
CCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTGATACTGTA
CACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGACCCGGCGT
TTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACCATTATAAG
GTAGGGTATGTGTGTGTGTGGGTGTGA
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Synonyms
Publications